Guide to the Human Genome
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Name: LOC100288471 Sequence: fasta or formatted (152aa) NCBI GI: 239749816
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {152aa} PREDICTED: hypothetical protein XP_002343034
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         20           2
 C cysteine            2.0          3           1
 D aspartate           5.9          9           4
 E glutamate           3.3          5           1
 F phenylalanine       2.0          3           1
 G glycine            16.4         25           3
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              2.0          3           1
 L leucine             7.2         11           2
 M methionine          2.0          3           1
 N asparagine          0.7          1           1
 P proline            12.5         19           6
 Q glutamine           1.3          2           1
 R arginine           11.8         18           5
 S serine             10.5         16           2
 T threonine           0.7          1           1
 V valine              5.3          8           2
 W tryptophan          3.3          5           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291632          1.000   PREDICTED: hypothetical protein XP_002344527 
LOC100288471          1.000   PREDICTED: hypothetical protein XP_002343034 
ZIC5                  0.088   zinc finger protein of the cerebellum 5 
WIPF3                 0.071   WAS/WASL interacting protein family, member 3 [Homo...
FNBP4                 0.071   formin binding protein 4 
PCLO                  0.071   piccolo isoform 2 
PCLO                  0.071   piccolo isoform 1 
FOXK1                 0.068   forkhead box K1 
KDM6B                 0.068   lysine (K)-specific demethylase 6B 
RANBP9                0.064   RAN binding protein 9 
MMP21                 0.064   matrix metalloproteinase 21 preproprotein 
PDE4D                 0.061   phosphodiesterase 4D isoform 1 
LOC100131102          0.061   PREDICTED: hypothetical protein 
RAPH1                 0.061   Ras association and pleckstrin homology domains 1 is...
LOC100131102          0.061   PREDICTED: hypothetical protein 
FMNL2                 0.061   formin-like 2 
WHAMM                 0.061   WAS protein homolog associated with actin, golgi me...
ZFHX4                 0.061   zinc finger homeodomain 4 
ACR                   0.061   acrosin precursor 
WIPF1                 0.057   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.057   WAS/WASL interacting protein family, member 1 
TRRAP                 0.057   transformation/transcription domain-associated protei...
FMN1                  0.057   formin 1 
FUSSEL18              0.057   PREDICTED: functional smad suppressing element 18 [...
FLJ20021              0.057   PREDICTED: hypothetical protein 
LOC645321             0.057   PREDICTED: hypothetical protein 
FUSSEL18              0.057   PREDICTED: functional smad suppressing element 18 [...
FLJ20021              0.057   PREDICTED: hypothetical protein 
LOC645321             0.057   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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