BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|73747829 ligase III, DNA, ATP-dependent isoform alpha precursor [Homo sapiens] (1009 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|73747829 ligase III, DNA, ATP-dependent isoform alpha precurs... 2043 0.0 gi|73747844 ligase III, DNA, ATP-dependent isoform beta precurso... 1885 0.0 gi|4557719 DNA ligase I [Homo sapiens] 175 2e-43 gi|46255052 DNA ligase IV [Homo sapiens] 152 1e-36 gi|23199993 DNA ligase IV [Homo sapiens] 152 1e-36 gi|148539894 DNA ligase IV [Homo sapiens] 152 1e-36 gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo... 54 7e-07 gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 38 0.042 gi|93102361 palladin [Homo sapiens] 37 0.12 gi|87298937 centrosomal protein 110kDa [Homo sapiens] 37 0.12 gi|4885375 histone cluster 1, H1c [Homo sapiens] 34 0.79 gi|190684675 X-ray repair cross complementing protein 1 [Homo sa... 33 1.0 gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 33 1.0 gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 33 1.0 gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 33 1.0 gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 33 1.0 gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 33 1.0 gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 33 1.0 gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F... 33 1.0 gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 33 1.0 gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 33 1.0 gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 33 1.0 gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 33 1.8 gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 33 1.8 gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 33 1.8 gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 33 1.8 gi|28559039 mediator complex subunit 1 [Homo sapiens] 33 1.8 gi|27436974 potassium voltage-gated channel, Shab-related subfam... 33 1.8 gi|20070262 TNF receptor-associated factor 3 interacting protein... 32 2.3 gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 32 2.3 >gi|73747829 ligase III, DNA, ATP-dependent isoform alpha precursor [Homo sapiens] Length = 1009 Score = 2043 bits (5293), Expect = 0.0 Identities = 1009/1009 (100%), Positives = 1009/1009 (100%) Query: 1 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ 60 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ Sbjct: 1 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ 60 Query: 61 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG 120 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG Sbjct: 61 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG 120 Query: 121 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH 180 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH Sbjct: 121 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH 180 Query: 181 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP 240 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP Sbjct: 181 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP 240 Query: 241 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH 300 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH Sbjct: 241 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH 300 Query: 301 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ 360 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ Sbjct: 301 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ 360 Query: 361 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL 420 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL Sbjct: 361 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL 420 Query: 421 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP 480 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP Sbjct: 421 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP 480 Query: 481 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH 540 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH Sbjct: 481 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH 540 Query: 541 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF 600 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF Sbjct: 541 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF 600 Query: 601 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK 660 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK Sbjct: 601 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK 660 Query: 661 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS 720 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS Sbjct: 661 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS 720 Query: 721 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA 780 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA Sbjct: 721 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA 780 Query: 781 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV 840 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV Sbjct: 781 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV 840 Query: 841 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS 900 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS Sbjct: 841 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS 900 Query: 901 AMKVGEKLATKSSPVKVGEKRKAADETLCQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFV 960 AMKVGEKLATKSSPVKVGEKRKAADETLCQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFV Sbjct: 901 AMKVGEKLATKSSPVKVGEKRKAADETLCQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFV 960 Query: 961 AFDGDLVQEFDMTSATHVLGSRDKNPAAQQVSPEWIWACIRKRRLVAPC 1009 AFDGDLVQEFDMTSATHVLGSRDKNPAAQQVSPEWIWACIRKRRLVAPC Sbjct: 961 AFDGDLVQEFDMTSATHVLGSRDKNPAAQQVSPEWIWACIRKRRLVAPC 1009 >gi|73747844 ligase III, DNA, ATP-dependent isoform beta precursor [Homo sapiens] Length = 949 Score = 1885 bits (4883), Expect = 0.0 Identities = 932/932 (100%), Positives = 932/932 (100%) Query: 1 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ 60 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ Sbjct: 1 MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLLHGHPLFLRRKPVLSFQ 60 Query: 61 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG 120 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG Sbjct: 61 GSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG 120 Query: 121 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH 180 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH Sbjct: 121 KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH 180 Query: 181 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP 240 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP Sbjct: 181 IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP 240 Query: 241 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH 300 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH Sbjct: 241 SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH 300 Query: 301 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ 360 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ Sbjct: 301 GDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ 360 Query: 361 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL 420 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL Sbjct: 361 SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL 420 Query: 421 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP 480 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP Sbjct: 421 KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLMTP 480 Query: 481 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH 540 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH Sbjct: 481 VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH 540 Query: 541 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF 600 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF Sbjct: 541 FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF 600 Query: 601 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK 660 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK Sbjct: 601 NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLK 660 Query: 661 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS 720 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS Sbjct: 661 DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS 720 Query: 721 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA 780 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA Sbjct: 721 QKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA 780 Query: 781 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV 840 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV Sbjct: 781 VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV 840 Query: 841 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS 900 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS Sbjct: 841 VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPS 900 Query: 901 AMKVGEKLATKSSPVKVGEKRKAADETLCQTK 932 AMKVGEKLATKSSPVKVGEKRKAADETLCQTK Sbjct: 901 AMKVGEKLATKSSPVKVGEKRKAADETLCQTK 932 >gi|4557719 DNA ligase I [Homo sapiens] Length = 919 Score = 175 bits (443), Expect = 2e-43 Identities = 124/373 (33%), Positives = 188/373 (50%), Gaps = 35/373 (9%) Query: 480 PVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHK-NGDHFSYFSRSLKPVLPHK 537 P++PMLA + + +K+ F+ E KYDG+R Q+H G FSR+ + Sbjct: 539 PLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQED----N 594 Query: 538 VAHFKDYIPQA----FPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKK----AAFQDAN 589 + D I + P S ILD+E + D + + PF L K+ A+ Sbjct: 595 TGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQ 654 Query: 590 VCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRV 649 VCL+ FD IY N SL+ PL RR+ L +N VE +F+ +A+ + + Sbjct: 655 VCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQS 714 Query: 650 IQEGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKG 705 +++ EGL++K DV TYE KR +WLK+KKDYL+ + DT DLVV+GA+ G+G + Sbjct: 715 VKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLD--GVGDTLDLVVIGAYLGRGKRA 772 Query: 706 GMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNK 765 G FL+ YD S++ + K G D L L + + PS P +++++ Sbjct: 773 GRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVL---PSPRP-YVRIDG 828 Query: 766 IYYPDFIVPDPKKAAVWEITGAEFSKSEAHTA--------DGISIRFPRCTRIRDDKDWK 817 PD + DP +AVWE+ A+ S S + A GIS+RFPR R+R+DK + Sbjct: 829 AVIPDHWL-DP--SAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPE 885 Query: 818 SATNLPQLKELYQ 830 AT Q+ LY+ Sbjct: 886 QATTSAQVACLYR 898 >gi|46255052 DNA ligase IV [Homo sapiens] Length = 911 Score = 152 bits (385), Expect = 1e-36 Identities = 149/569 (26%), Positives = 260/569 (45%), Gaps = 63/569 (11%) Query: 300 HGDV----YLTVKLLLPGVIKT--VYNLNDKQIVKLFSRIFNCNPD--DMARDLE----- 346 H DV Y ++L+LP + + Y + + + KL+ + N D D + L Sbjct: 57 HKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPT 116 Query: 347 --QGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSK---LTKEDEQQQALQDIA 401 GD + + + K K LTIQ+V++ L ++ ++D +++L + Sbjct: 117 GTHGDAGDFAMIAYFVLKP-RCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLI 175 Query: 402 SRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEV 461 ++ +A + K +IR+I DLK+ + + +A E + +L+ V R LH+ Sbjct: 176 TQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVC-RQLHDPSVG 234 Query: 462 EKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHKNG 520 + + +L + +PMLA A +E+ K + F E K DGER+Q+HK+G Sbjct: 235 LSD--------ISITLFSAFKPMLA-AIADIEHIEKDMKHQSFYIETKLDGERMQMHKDG 285 Query: 521 DHFSYFSRSLKPVLPHKVAH-----FKDYIPQAFPGGHSM-ILDSEVLLIDNKTGKPLPF 574 D + YFSR+ A +I AF + ILD E++ + T + Sbjct: 286 DVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQK 345 Query: 575 GT-LGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEM 633 GT + + D C VFD + N+ L L +R + L IP RI + Sbjct: 346 GTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQK 405 Query: 634 KRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTAD 691 + ++ D + I + EG+++K Y+P KR WLK+K +Y++ + D D Sbjct: 406 TQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVS--GLMDELD 463 Query: 692 LVVLGAFYGQGSKGGMMSIFLMGCYD---PGSQK--WCTVTKCAGGHDDATLARLQN-EL 745 ++++G ++G+GS+GGMMS FL + PG + + T+++ G T+ L + L Sbjct: 464 ILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSG---CTMKELYDLGL 520 Query: 746 DMVKISK------DPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADG 799 + K K PS I + ++Y +P + + +I AE S+ + G Sbjct: 521 KLAKYWKPFHRKAPPSSILCGTEKPEVYI------EPCNSVIVQIKAAEIVPSDMYKT-G 573 Query: 800 ISIRFPRCTRIRDDKDWKSATNLPQLKEL 828 ++RFPR +IRDDK+W L L++L Sbjct: 574 CTLRFPRIEKIRDDKEWHECMTLDDLEQL 602 >gi|23199993 DNA ligase IV [Homo sapiens] Length = 911 Score = 152 bits (385), Expect = 1e-36 Identities = 149/569 (26%), Positives = 260/569 (45%), Gaps = 63/569 (11%) Query: 300 HGDV----YLTVKLLLPGVIKT--VYNLNDKQIVKLFSRIFNCNPD--DMARDLE----- 346 H DV Y ++L+LP + + Y + + + KL+ + N D D + L Sbjct: 57 HKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPT 116 Query: 347 --QGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSK---LTKEDEQQQALQDIA 401 GD + + + K K LTIQ+V++ L ++ ++D +++L + Sbjct: 117 GTHGDAGDFAMIAYFVLKP-RCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLI 175 Query: 402 SRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEV 461 ++ +A + K +IR+I DLK+ + + +A E + +L+ V R LH+ Sbjct: 176 TQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVC-RQLHDPSVG 234 Query: 462 EKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHKNG 520 + + +L + +PMLA A +E+ K + F E K DGER+Q+HK+G Sbjct: 235 LSD--------ISITLFSAFKPMLA-AIADIEHIEKDMKHQSFYIETKLDGERMQMHKDG 285 Query: 521 DHFSYFSRSLKPVLPHKVAH-----FKDYIPQAFPGGHSM-ILDSEVLLIDNKTGKPLPF 574 D + YFSR+ A +I AF + ILD E++ + T + Sbjct: 286 DVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQK 345 Query: 575 GT-LGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEM 633 GT + + D C VFD + N+ L L +R + L IP RI + Sbjct: 346 GTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQK 405 Query: 634 KRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTAD 691 + ++ D + I + EG+++K Y+P KR WLK+K +Y++ + D D Sbjct: 406 TQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVS--GLMDELD 463 Query: 692 LVVLGAFYGQGSKGGMMSIFLMGCYD---PGSQK--WCTVTKCAGGHDDATLARLQN-EL 745 ++++G ++G+GS+GGMMS FL + PG + + T+++ G T+ L + L Sbjct: 464 ILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSG---CTMKELYDLGL 520 Query: 746 DMVKISK------DPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADG 799 + K K PS I + ++Y +P + + +I AE S+ + G Sbjct: 521 KLAKYWKPFHRKAPPSSILCGTEKPEVYI------EPCNSVIVQIKAAEIVPSDMYKT-G 573 Query: 800 ISIRFPRCTRIRDDKDWKSATNLPQLKEL 828 ++RFPR +IRDDK+W L L++L Sbjct: 574 CTLRFPRIEKIRDDKEWHECMTLDDLEQL 602 >gi|148539894 DNA ligase IV [Homo sapiens] Length = 911 Score = 152 bits (385), Expect = 1e-36 Identities = 149/569 (26%), Positives = 260/569 (45%), Gaps = 63/569 (11%) Query: 300 HGDV----YLTVKLLLPGVIKT--VYNLNDKQIVKLFSRIFNCNPD--DMARDLE----- 346 H DV Y ++L+LP + + Y + + + KL+ + N D D + L Sbjct: 57 HKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPT 116 Query: 347 --QGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSK---LTKEDEQQQALQDIA 401 GD + + + K K LTIQ+V++ L ++ ++D +++L + Sbjct: 117 GTHGDAGDFAMIAYFVLKP-RCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLI 175 Query: 402 SRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEV 461 ++ +A + K +IR+I DLK+ + + +A E + +L+ V R LH+ Sbjct: 176 TQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVC-RQLHDPSVG 234 Query: 462 EKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFS-EIKYDGERVQVHKNG 520 + + +L + +PMLA A +E+ K + F E K DGER+Q+HK+G Sbjct: 235 LSD--------ISITLFSAFKPMLA-AIADIEHIEKDMKHQSFYIETKLDGERMQMHKDG 285 Query: 521 DHFSYFSRSLKPVLPHKVAH-----FKDYIPQAFPGGHSM-ILDSEVLLIDNKTGKPLPF 574 D + YFSR+ A +I AF + ILD E++ + T + Sbjct: 286 DVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQK 345 Query: 575 GT-LGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEM 633 GT + + D C VFD + N+ L L +R + L IP RI + Sbjct: 346 GTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQK 405 Query: 634 KRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTAD 691 + ++ D + I + EG+++K Y+P KR WLK+K +Y++ + D D Sbjct: 406 TQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVS--GLMDELD 463 Query: 692 LVVLGAFYGQGSKGGMMSIFLMGCYD---PGSQK--WCTVTKCAGGHDDATLARLQN-EL 745 ++++G ++G+GS+GGMMS FL + PG + + T+++ G T+ L + L Sbjct: 464 ILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSG---CTMKELYDLGL 520 Query: 746 DMVKISK------DPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADG 799 + K K PS I + ++Y +P + + +I AE S+ + G Sbjct: 521 KLAKYWKPFHRKAPPSSILCGTEKPEVYI------EPCNSVIVQIKAAEIVPSDMYKT-G 573 Query: 800 ISIRFPRCTRIRDDKDWKSATNLPQLKEL 828 ++RFPR +IRDDK+W L L++L Sbjct: 574 CTLRFPRIEKIRDDKEWHECMTLDDLEQL 602 >gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo sapiens] Length = 1014 Score = 53.9 bits (128), Expect = 7e-07 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 87 EMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEK 146 E +++ + V+YAK G A CKKC E I K R+ +V +P + G + WYH C ++ Sbjct: 3 ESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFD--GKVPHWYHFSCFWKV 60 Query: 147 LERARATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAV 197 R +++ +EL W++ + +K + G+ +K + Sbjct: 61 GHSIRHPDVEVDGFSELR-WDDQQKVKKTAEAGGVTGKGQDGIGSKAEKTL 110 Score = 49.7 bits (117), Expect = 1e-05 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 93 FCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARA 152 F +YAK + CK C EKI KG R+ K + +P G + WYH C + R Sbjct: 113 FAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVK--NREEL 170 Query: 153 TTKKIEDLTELEGWEELEDNEKEQITQHIADLSSK 187 + ++L+G+ L +KE + + + + S+ Sbjct: 171 GFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSE 205 >gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sapiens] Length = 699 Score = 38.1 bits (87), Expect = 0.042 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 33/133 (24%) Query: 790 SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTVVAGDEGSST 849 S E T ++ P+ T K+A +LP K+ Q S++ + S Sbjct: 432 SSEEEKTKKMVATTKPKATA-------KAALSLPA-KQAPQGSRDSSS---------DSD 474 Query: 850 TGGSSEENKGPSGSAVSRK--------APSKPSASTKKAEGKLSNSNSKDGNMQTAKPSA 901 + S EE + S SAV +K APSKP AS KK + + SNS+S D + + + Sbjct: 475 SSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKP-ASAKKGKAESSNSSSSDDSSEEEE--- 530 Query: 902 MKVGEKLATKSSP 914 EKL K SP Sbjct: 531 ----EKLKGKGSP 539 Score = 37.7 bits (86), Expect = 0.055 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 6/83 (7%) Query: 840 VVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGK--LSNSNSKDGNMQTA 897 V + ++ S + SSEE K P AV KA +KP + K AE S+S+S + + + Sbjct: 319 VESSEDSSDESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPS 378 Query: 898 KPSAMKVGEK----LATKSSPVK 916 KP+ + TKS VK Sbjct: 379 KPAGTTKNSSNKPAVTTKSPAVK 401 >gi|93102361 palladin [Homo sapiens] Length = 1106 Score = 36.6 bits (83), Expect = 0.12 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 7/97 (7%) Query: 452 ERVLHNAQE--VEKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFSEIKY 509 E +L+N Q +E RR L ++ + +Q E EY + C + SEI+Y Sbjct: 692 EDLLNNGQPRLTYEERMARRLLGADSATVFNIQEPEEETANQ-EYKVSSCEQRLISEIEY 750 Query: 510 DGERVQVHKNGDHFSY----FSRSLKPVLPHKVAHFK 542 ER V ++GD Y + P K+ H+K Sbjct: 751 RLERSPVDESGDEVQYGDVPVENGMAPFFEMKLKHYK 787 >gi|87298937 centrosomal protein 110kDa [Homo sapiens] Length = 2325 Score = 36.6 bits (83), Expect = 0.12 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 14/106 (13%) Query: 377 VDEFLLRLSKLTKE----DEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDA 432 +DE L R++K T+E +EQ Q A+ DL+ +I SG + L Sbjct: 578 LDEILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVI----------SGLQEYLGT 627 Query: 433 LDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASLM 478 + A +A R L+D E +L EVE+E Q +++ A M Sbjct: 628 IKGQATQAQNECRKLRDEKETLLQRLTEVEQERDQLEIVAMDAENM 673 >gi|4885375 histone cluster 1, H1c [Homo sapiens] Length = 213 Score = 33.9 bits (76), Expect = 0.79 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 10/90 (11%) Query: 845 EGSSTTGGSSEENKGPSGSAVSR------KAPSKPSASTKK----AEGKLSNSNSKDGNM 894 +G+ +G K SG A + P KP + KK A G ++K Sbjct: 97 KGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPK 156 Query: 895 QTAKPSAMKVGEKLATKSSPVKVGEKRKAA 924 + KP+A V +K+A KV + +KAA Sbjct: 157 KAKKPAAATVTKKVAKSPKKAKVAKPKKAA 186 >gi|190684675 X-ray repair cross complementing protein 1 [Homo sapiens] Length = 633 Score = 33.5 bits (75), Expect = 1.0 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 13/85 (15%) Query: 934 LLDIFTGVRLYLPPSTPDFSR--LRRYFVAFDGDLVQEFDMTSATHVLGSRDKNPAAQQ- 990 L D F G +L P R L RY AF+G+L +++ V+ +++ +P+ ++ Sbjct: 539 LPDFFQGKHFFLYGEFPGDERRKLIRYVTAFNGEL-EDYMSDRVQFVITAQEWDPSFEEA 597 Query: 991 ---------VSPEWIWACIRKRRLV 1006 V P WI++C K++L+ Sbjct: 598 LMDNPSLAFVRPRWIYSCNEKQKLL 622 >gi|169166609 PREDICTED: similar to ribonucleic acid binding protein S1 isoform 6 [Homo sapiens] Length = 305 Score = 33.5 bits (75), Expect = 1.0 Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853 S R P T+ +D D KS K + S EK D T + GSS+T S Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80 Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911 S + G S S S S SAS++ S S+S + + PS + + +K Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140 Query: 912 SSPVKVGEK-RKAADETLCQTKV 933 S P K EK RK + TKV Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKV 163 >gi|113415994 PREDICTED: similar to ribonucleic acid binding protein S1 isoform 2 [Homo sapiens] Length = 305 Score = 33.5 bits (75), Expect = 1.0 Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853 S R P T+ +D D KS K + S EK D T + GSS+T S Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80 Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911 S + G S S S S SAS++ S S+S + + PS + + +K Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140 Query: 912 SSPVKVGEK-RKAADETLCQTKV 933 S P K EK RK + TKV Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKV 163 >gi|113415504 PREDICTED: similar to ribonucleic acid binding protein S1 [Homo sapiens] Length = 305 Score = 33.5 bits (75), Expect = 1.0 Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853 S R P T+ +D D KS K + S EK D T + GSS+T S Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80 Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911 S + G S S S S SAS++ S S+S + + PS + + +K Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140 Query: 912 SSPVKVGEK-RKAADETLCQTKV 933 S P K EK RK + TKV Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKV 163 >gi|169166499 PREDICTED: similar to ribonucleic acid binding protein S1 [Homo sapiens] Length = 305 Score = 33.5 bits (75), Expect = 1.0 Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853 S R P T+ +D D KS K + S EK D T + GSS+T S Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80 Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911 S + G S S S S SAS++ S S+S + + PS + + +K Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140 Query: 912 SSPVKVGEK-RKAADETLCQTKV 933 S P K EK RK + TKV Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKV 163 >gi|113415498 PREDICTED: similar to ribonucleic acid binding protein S1 [Homo sapiens] Length = 305 Score = 33.5 bits (75), Expect = 1.0 Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853 S R P T+ +D D KS K + S EK D T + GSS+T S Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80 Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911 S + G S S S S SAS++ S S+S + + PS + + +K Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140 Query: 912 SSPVKVGEK-RKAADETLCQTKV 933 S P K EK RK + TKV Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKV 163 >gi|88973230 PREDICTED: similar to ribonucleic acid binding protein S1 isoform 3 [Homo sapiens] Length = 305 Score = 33.5 bits (75), Expect = 1.0 Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853 S R P T+ +D D KS K + S EK D T + GSS+T S Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80 Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911 S + G S S S S SAS++ S S+S + + PS + + +K Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140 Query: 912 SSPVKVGEK-RKAADETLCQTKV 933 S P K EK RK + TKV Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKV 163 >gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F subunit [Homo sapiens] Length = 1977 Score = 33.5 bits (75), Expect = 1.0 Identities = 19/63 (30%), Positives = 29/63 (46%) Query: 521 DHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVH 580 D+F Y +R + PH + FK + PG I +V+ + + PL FG L H Sbjct: 1442 DNFDYLTRDWSILGPHHLDEFKRIWSEYDPGAKGRIKHLDVVALLRRIQPPLGFGKLCPH 1501 Query: 581 KKA 583 + A Sbjct: 1502 RVA 1504 >gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapiens] Length = 305 Score = 33.5 bits (75), Expect = 1.0 Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853 S R P T+ +D D KS K + S EK D T + GSS+T S Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80 Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911 S + G S S S S SAS++ S S+S + + PS + + +K Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140 Query: 912 SSPVKVGEK-RKAADETLCQTKV 933 S P K EK RK + TKV Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKV 163 >gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sapiens] Length = 1710 Score = 33.5 bits (75), Expect = 1.0 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 11/132 (8%) Query: 812 DDKDWKSATNLPQLKELYQ---LSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRK 868 DD D K Q + Y LS++ A ++G S +++NK V + Sbjct: 1291 DDPDKKPQAKQLQTRADYLIKLLSRDLAKKEALSGAGSSKRRKARAKKNKAMKSIKVKEE 1350 Query: 869 APSK----PSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAA 924 S PS + + + KLS S S DG ++ K S + PV + E+ + Sbjct: 1351 IKSDSSPLPSEKSDEDDDKLSESKS-DGRERSKKSSVSDAPVHITASGEPVPISEESEEL 1409 Query: 925 DE---TLCQTKV 933 D+ ++C+ ++ Sbjct: 1410 DQKTFSICKERM 1421 >gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sapiens] Length = 305 Score = 33.5 bits (75), Expect = 1.0 Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 11/143 (7%) Query: 801 SIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEK---ADFTVV--AGDEGSSTTGG--S 853 S R P T+ +D D KS K + S EK D T + GSS+T S Sbjct: 22 STRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSS 80 Query: 854 SEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVG--EKLATK 911 S + G S S S S SAS++ S S+S + + PS + + +K Sbjct: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140 Query: 912 SSPVKVGEK-RKAADETLCQTKV 933 S P K EK RK + TKV Sbjct: 141 SKPPKRDEKERKRRSPSPKPTKV 163 >gi|59806361 hypothetical protein LOC387104 [Homo sapiens] Length = 947 Score = 32.7 bits (73), Expect = 1.8 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 816 WKSATNLPQLKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRK----APS 871 WK +L + + L KE+A A + GGSS + SG + A + Sbjct: 250 WKEGCLQSELIQ-FHLKKERAAAAAAAAQMHAKNGGGSSSRSSPVSGPPAVCETLAVASA 308 Query: 872 KPSASTKKAEGKLSNSNSKDGNMQ-TAKPSAMKVGEKLATKSSPVKVGEKRKAADETL 928 P A+ + + + ++ G MQ A PS+ ++L + + EK + +ETL Sbjct: 309 SPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQLQEQEEMQEEMEKLREENETL 366 >gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo sapiens] Length = 1751 Score = 32.7 bits (73), Expect = 1.8 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 823 PQLKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEG 882 PQ+ ++ L +E D +GD GS G + E + +G+A+ + P+ P +T G Sbjct: 644 PQVSPMHCLDEEGDDSDGASGDSGSG-LGDARELLREETGAALKPRLPAPPPVTTPPLAG 702 Query: 883 KLSNSNSKDGNMQ 895 S +S+ ++ Sbjct: 703 GSSTEDSRSEEVE 715 >gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo sapiens] Length = 1336 Score = 32.7 bits (73), Expect = 1.8 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 823 PQLKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEG 882 PQ+ ++ L +E D +GD GS G + E + +G+A+ + P+ P +T G Sbjct: 229 PQVSPMHCLDEEGDDSDGASGDSGSG-LGDARELLREETGAALKPRLPAPPPVTTPPLAG 287 Query: 883 KLSNSNSKDGNMQ 895 S +S+ ++ Sbjct: 288 GSSTEDSRSEEVE 300 >gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo sapiens] Length = 1516 Score = 32.7 bits (73), Expect = 1.8 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 823 PQLKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEG 882 PQ+ ++ L +E D +GD GS G + E + +G+A+ + P+ P +T G Sbjct: 409 PQVSPMHCLDEEGDDSDGASGDSGSG-LGDARELLREETGAALKPRLPAPPPVTTPPLAG 467 Query: 883 KLSNSNSKDGNMQ 895 S +S+ ++ Sbjct: 468 GSSTEDSRSEEVE 480 >gi|28559039 mediator complex subunit 1 [Homo sapiens] Length = 1581 Score = 32.7 bits (73), Expect = 1.8 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 843 GDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTK-KAEGK---LSNSNSKDGNMQTAK 898 G GSS + SS+ P S +++ S S+STK K +GK L N + N+ + Sbjct: 1136 GSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPNISPSH 1195 Query: 899 PSAMKVGEKLATKSSPV 915 +KLA+ PV Sbjct: 1196 SRPPGGSDKLASPMKPV 1212 >gi|27436974 potassium voltage-gated channel, Shab-related subfamily, member 2 [Homo sapiens] Length = 911 Score = 32.7 bits (73), Expect = 1.8 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 825 LKELYQLSKEKADFTVVAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKL 884 LK+ + S E D V E ++T + + + PS +RKA S+ S S K E K Sbjct: 454 LKDAFARSMELIDVAVEKAGESANTKDSADDNHLSPSRWKWARKALSETS-SNKSFENKY 512 Query: 885 SNSNSKDGNMQTAKPSA 901 + KD + Q S+ Sbjct: 513 QEVSQKDSHEQLNNTSS 529 >gi|20070262 TNF receptor-associated factor 3 interacting protein 1 isoform 1 [Homo sapiens] Length = 691 Score = 32.3 bits (72), Expect = 2.3 Identities = 20/72 (27%), Positives = 32/72 (44%) Query: 870 PSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETLC 929 P K SAS+ + KLS+ KD +T + + + L TK+S + + E Sbjct: 302 PEKKSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGRKEDNI 361 Query: 930 QTKVLLDIFTGV 941 K L I +G+ Sbjct: 362 SAKSLDSIVSGI 373 >gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f [Homo sapiens] Length = 1412 Score = 32.3 bits (72), Expect = 2.3 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 6/103 (5%) Query: 832 SKEKADFTVVAGD------EGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLS 885 SK KA +GD +GS + G+ +E + + S K E K S Sbjct: 1310 SKGKAKRDKASGDVKEKKGKGSLGSQGAKDEPEEELQKGMGTVEGGDQSNPKSKKEKKKS 1369 Query: 886 NSNSKDGNMQTAKPSAMKVGEKLATKSSPVKVGEKRKAADETL 928 + KD + K A K K + S K +K+K A++T+ Sbjct: 1370 DKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKKKTAEQTV 1412 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,571,158 Number of Sequences: 37866 Number of extensions: 1830230 Number of successful extensions: 7252 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 70 Number of HSP's that attempted gapping in prelim test: 6979 Number of HSP's gapped (non-prelim): 316 length of query: 1009 length of database: 18,247,518 effective HSP length: 112 effective length of query: 897 effective length of database: 14,006,526 effective search space: 12563853822 effective search space used: 12563853822 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.