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Search of human proteins with 71067336
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo
sapiens]
(262 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo sapi... 540 e-154
gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens] 412 e-115
gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens] 322 2e-88
gi|4505183 CD99 antigen isoform a precursor [Homo sapiens] 80 2e-15
gi|171543879 CD99 antigen isoform b precursor [Homo sapiens] 71 8e-13
gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens] 46 4e-05
gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens] 44 1e-04
gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens] 44 1e-04
gi|42519916 forkhead box O3A [Homo sapiens] 34 0.11
gi|4503739 forkhead box O3A [Homo sapiens] 34 0.11
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 34 0.15
gi|23510377 KN motif and ankyrin repeat domains 1 isoform b [Hom... 32 0.43
gi|64464726 KN motif and ankyrin repeat domains 1 isoform a [Hom... 32 0.43
gi|203098098 shroom family member 3 protein [Homo sapiens] 32 0.43
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 32 0.56
gi|157743252 pecanex-like 3 [Homo sapiens] 32 0.56
gi|7662010 zinc finger protein 516 [Homo sapiens] 32 0.73
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 31 1.3
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 31 1.3
gi|4504971 LIM domain binding 2 isoform a [Homo sapiens] 30 2.8
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 30 2.8
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 30 2.8
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 30 2.8
gi|89257348 homeo box HB9 [Homo sapiens] 30 2.8
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 29 3.6
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 29 3.6
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 29 3.6
gi|20070331 oxysterol binding protein-like 9 isoform e [Homo sap... 29 3.6
gi|22547176 oxysterol binding protein-like 9 isoform f [Homo sap... 29 3.6
gi|22547173 oxysterol binding protein-like 9 isoform d [Homo sap... 29 3.6
>gi|71067336 CD99 antigen-like 2 isoform E3'-E4'-E3-E4 [Homo
sapiens]
Length = 262
Score = 540 bits (1391), Expect = e-154
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGTT 60
MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGTT
Sbjct: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGTT 60
Query: 61 RAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFD 120
RAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFD
Sbjct: 61 RAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFD 120
Query: 121 LADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM 180
LADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM
Sbjct: 121 LADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM 180
Query: 181 VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQ 240
VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQ
Sbjct: 181 VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQ 240
Query: 241 VKYSTLHTQSAEPPPPPEPARI 262
VKYSTLHTQSAEPPPPPEPARI
Sbjct: 241 VKYSTLHTQSAEPPPPPEPARI 262
>gi|41281670 CD99 antigen-like 2 isoform E3-E4 [Homo sapiens]
Length = 213
Score = 412 bits (1059), Expect = e-115
Identities = 213/262 (81%), Positives = 213/262 (81%), Gaps = 49/262 (18%)
Query: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGTT 60
MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQ
Sbjct: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQ---------------- 44
Query: 61 RAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFD 120
RWNHVTTTTKRPVTTRAPANTLGNDFD
Sbjct: 45 ---------------------------------RWNHVTTTTKRPVTTRAPANTLGNDFD 71
Query: 121 LADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM 180
LADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM
Sbjct: 72 LADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM 131
Query: 181 VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQ 240
VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQ
Sbjct: 132 VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQ 191
Query: 241 VKYSTLHTQSAEPPPPPEPARI 262
VKYSTLHTQSAEPPPPPEPARI
Sbjct: 192 VKYSTLHTQSAEPPPPPEPARI 213
>gi|41281656 CD99 antigen-like 2 isoform E4 [Homo sapiens]
Length = 190
Score = 322 bits (826), Expect = 2e-88
Identities = 180/265 (67%), Positives = 183/265 (69%), Gaps = 78/265 (29%)
Query: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGTT 60
MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVK+
Sbjct: 1 MVAWRSAFLVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKR---------------- 44
Query: 61 RAPAKPPGSGLDLADALD---DQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGN 117
+ DLADALD D+DDGRRKP GG
Sbjct: 45 --------NDFDLADALDDRNDRDDGRRKPIAGG-------------------------- 70
Query: 118 DFDLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPG 177
GGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPG
Sbjct: 71 -------------------------GGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPG 105
Query: 178 SGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCE 237
SGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCE
Sbjct: 106 SGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCE 165
Query: 238 EPQVKYSTLHTQSAEPPPPPEPARI 262
EPQVKYSTLHTQSAEPPPPPEPARI
Sbjct: 166 EPQVKYSTLHTQSAEPPPPPEPARI 190
>gi|4505183 CD99 antigen isoform a precursor [Homo sapiens]
Length = 185
Score = 79.7 bits (195), Expect = 2e-15
Identities = 71/194 (36%), Positives = 95/194 (48%), Gaps = 46/194 (23%)
Query: 67 PGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFDLADALD 126
P G DL+DAL D ++ +KP T K+P + G+DFDL DA+
Sbjct: 22 PDGGFDLSDALPDNEN--KKP-----------TAIPKKP--------SAGDDFDLGDAVV 60
Query: 127 DRNDRDDGRR----KPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSND 174
D + DD R KP+ + G FSD DL D V GGE KG DG GS+
Sbjct: 61 D-GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE---GKGGSDGG-GSHR 115
Query: 175 DPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQQGLNADYVKGENLE 232
G A PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +QG D N
Sbjct: 116 KEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQG-EVDMESHRNAN 173
Query: 233 AVVCEEPQVKYSTL 246
A EP V+ + L
Sbjct: 174 A----EPAVQRTLL 183
>gi|171543879 CD99 antigen isoform b precursor [Homo sapiens]
Length = 169
Score = 71.2 bits (173), Expect = 8e-13
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 25/145 (17%)
Query: 116 GNDFDLADALDDRNDRDDGRR----KPI--------AGGGGFSDKDLEDIVGGGEYKPDK 163
G+DFDL DA+ D + DD R KP+ + G FSD DL D V GGE K
Sbjct: 34 GDDFDLGDAVVD-GENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE---GK 89
Query: 164 GKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--SIQQGL 221
G DG GS+ G A PG I G+ A+ +A+ GA+SS+I+YQ+KK CF + +QG
Sbjct: 90 GGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQG- 146
Query: 222 NADYVKGENLEAVVCEEPQVKYSTL 246
D N A EP V+ + L
Sbjct: 147 EVDMESHRNANA----EPAVQRTLL 167
>gi|213688348 XG glycoprotein isoform 3 precursor [Homo sapiens]
Length = 181
Score = 45.8 bits (107), Expect = 4e-05
Identities = 54/222 (24%), Positives = 79/222 (35%), Gaps = 56/222 (25%)
Query: 9 LVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGTTRAPAKPPG 68
L CLAF + RG DFD L DA+ + K+P ++ +P P P
Sbjct: 7 LPCLAFLCFLMHARGQRDFD---LADALDDPEPTKKP--NSDIYPKPKPPYYPQPENPDS 61
Query: 69 SGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFDLADALDDR 128
G R KP P GN + + +
Sbjct: 62 GGNIYP---------RPKP----------------------RPQPQPGNSGNSGGSYFND 90
Query: 129 NDRDDGRRKPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGM 180
DRDDGR P GGGG+S D GG++ G +G M
Sbjct: 91 VDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYGNPEGN----------M 140
Query: 181 VAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLN 222
VA+ ++ + S + + L+GA +SY ++ CF + N
Sbjct: 141 VAK--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 180
>gi|213688346 XG glycoprotein isoform 2 precursor [Homo sapiens]
Length = 195
Score = 44.3 bits (103), Expect = 1e-04
Identities = 52/220 (23%), Positives = 80/220 (36%), Gaps = 38/220 (17%)
Query: 9 LVCLAFSLATLVQRGSGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGTTRAPAKPPG 68
L CLAF + RG DFD L DA+ + K+P ++ +P P P
Sbjct: 7 LPCLAFLCFLMHARGQRDFD---LADALDDPEPTKKP--NSDIYPKPKPPYYPQPENPDS 61
Query: 69 SGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFDLADALDDR 128
G N RP + G F+ D D R
Sbjct: 62 GG-------------------------NIYPRPKPRPQPQPGNSGNSGGYFNDVDRDDGR 96
Query: 129 NDRDDGRRKPIAGGGG--FSDKDLEDIVGGGEYKPDKGKGDGRYGSND----DPGSGMVA 182
R P GGGG S + ++ G G Y+ + G+ G + +P MVA
Sbjct: 97 YPPRPRPRPPAGGGGGGYSSYGNSDNTHGRGGYRLNSRYGNTYGGDHHSTYGNPEGNMVA 156
Query: 183 EPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLN 222
+ ++ + S + + L+GA +SY ++ CF + N
Sbjct: 157 K--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 194
>gi|28212220 XG glycoprotein isoform 1 precursor [Homo sapiens]
Length = 180
Score = 43.9 bits (102), Expect = 1e-04
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 31/168 (18%)
Query: 72 DLADALDDQDDGRR---------KPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFDLA 122
DLADALDD + ++ KP + N + P P GN +
Sbjct: 26 DLADALDDPEPTKKPNSDIYPKPKPPYYPQPE-NPDSGGNIYPRPKPRPQPQPGNSGNSG 84
Query: 123 DALDDRNDRDDGRRKPI--------AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSND 174
+D DRDDGR P GGGG+S D GG++ G
Sbjct: 85 GYFND-VDRDDGRYPPRPRPRPPAGGGGGGYSSYGNSDNTHGGDHHSTYG---------- 133
Query: 175 DPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSIQQGLN 222
+P MVA+ ++ + S + + L+GA +SY ++ CF + N
Sbjct: 134 NPEGNMVAK--IVSPIVSVVVVTLLGAAASYFKLNNRRNCFRTHEPEN 179
>gi|42519916 forkhead box O3A [Homo sapiens]
Length = 673
Score = 34.3 bits (77), Expect = 0.11
Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 62 APAKP-PGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGN--- 117
APA P P S L++ LD + + + +P T +RP +PA G
Sbjct: 4 APASPAPLSPLEVE--LDPEFEPQSRP--------RSCTWPLQRPELQASPAKPSGETAA 53
Query: 118 DFDLADALDDRNDRDDGRRKPIA---GGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSND 174
D + + DD +D D G R A GGGG S +G G D + G
Sbjct: 54 DSMIPEEEDDEDDEDGGGRAGSAMAIGGGGGSGT-----LGSGLLLEDSARVLAPGGQ-- 106
Query: 175 DPGSGMVAEPGTIAGVASAL 194
DPGSG G ++G AL
Sbjct: 107 DPGSGPATAAGGLSGGTQAL 126
>gi|4503739 forkhead box O3A [Homo sapiens]
Length = 673
Score = 34.3 bits (77), Expect = 0.11
Identities = 42/140 (30%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 62 APAKP-PGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGN--- 117
APA P P S L++ LD + + + +P T +RP +PA G
Sbjct: 4 APASPAPLSPLEVE--LDPEFEPQSRP--------RSCTWPLQRPELQASPAKPSGETAA 53
Query: 118 DFDLADALDDRNDRDDGRRKPIA---GGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSND 174
D + + DD +D D G R A GGGG S +G G D + G
Sbjct: 54 DSMIPEEEDDEDDEDGGGRAGSAMAIGGGGGSGT-----LGSGLLLEDSARVLAPGGQ-- 106
Query: 175 DPGSGMVAEPGTIAGVASAL 194
DPGSG G ++G AL
Sbjct: 107 DPGSGPATAAGGLSGGTQAL 126
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 33.9 bits (76), Expect = 0.15
Identities = 64/260 (24%), Positives = 88/260 (33%), Gaps = 43/260 (16%)
Query: 39 TSSVKQPWDHTTTTTTNRPGTTRAPAKPPGS-----------GLDLADALDDQDDGRRKP 87
TSS H + TT RP T+ P PPG+ G D A P
Sbjct: 494 TSSGGGTGPHPPSGTTLRPPTSSTPGGPPGAENSTSHQPATPGGDTAQTPKPGTSQPMPP 553
Query: 88 GIGGRERWNHVTTT-----TKRPVTTRAPANTLGNDFDLADAL---DDRNDRDDGRRKPI 139
G+G T + T P T++ ++G A + G +P+
Sbjct: 554 GVGTSTSHQPATPSGGTAQTPEPGTSQPMPPSMGTSTSHQPATPGGGTAQTPEAGTSQPM 613
Query: 140 AGGGGFSDKDLEDIVGGGEYK-PDKGKGDGRYGSNDDPGSG---------MVAEPGTIAG 189
G G S GGG + P+ G S P SG V + + G
Sbjct: 614 PPGMGTSTSHQPTTPGGGTAQTPEPGTSQPMPLSKSTPSSGGGPSEDKRFSVVDMAALGG 673
Query: 190 VASA-LAMALIG-AVSSYISYQQKKFCFSIQ------QGL-NADYVKGENLEAVVCEEPQ 240
V A L +AL+G AV + Y + C S + QG N ++ P
Sbjct: 674 VLGALLLLALLGLAVLVHKHYGPRLKCCSGKAPEPQPQGFDNQAFLPDHKANWAPVPSP- 732
Query: 241 VKYSTLHTQSAEPPPPPEPA 260
T + AE P P EPA
Sbjct: 733 ----THDPKPAEAPMPAEPA 748
>gi|23510377 KN motif and ankyrin repeat domains 1 isoform b [Homo
sapiens]
Length = 1194
Score = 32.3 bits (72), Expect = 0.43
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 135 RRKPIAGGGGF-SDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASA 193
RR +A GG + L VG G + P K + Y N D GS A P T + +S
Sbjct: 22 RRPRLASFGGMGTTSSLPSFVGSGNHNPAKHQLQNGYQGNGDYGSYAPAAPTTSSMGSSI 81
Query: 194 LAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEP--QVKYSTLHTQSA 251
L +S+ ++ I++ + + + LE V P QVK S L +
Sbjct: 82 RHSPLSSGISTPVTNVSPMHLQHIREQMAIALKRLKELEEQVRTIPVLQVKISVLQEEKR 141
Query: 252 E 252
+
Sbjct: 142 Q 142
>gi|64464726 KN motif and ankyrin repeat domains 1 isoform a [Homo
sapiens]
Length = 1352
Score = 32.3 bits (72), Expect = 0.43
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 135 RRKPIAGGGGF-SDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASA 193
RR +A GG + L VG G + P K + Y N D GS A P T + +S
Sbjct: 180 RRPRLASFGGMGTTSSLPSFVGSGNHNPAKHQLQNGYQGNGDYGSYAPAAPTTSSMGSSI 239
Query: 194 LAMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEP--QVKYSTLHTQSA 251
L +S+ ++ I++ + + + LE V P QVK S L +
Sbjct: 240 RHSPLSSGISTPVTNVSPMHLQHIREQMAIALKRLKELEEQVRTIPVLQVKISVLQEEKR 299
Query: 252 E 252
+
Sbjct: 300 Q 300
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 32.3 bits (72), Expect = 0.43
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 48 HTTTTTTNRPGTTRAPA-------KPPGSGLDLADALDDQDDGRRKPGIGGRERWNHVTT 100
HT++ PG A A KP S L+ + ++ G ++P +GG + H
Sbjct: 752 HTSSLGRRGPGPGSASALQGFQYGKPHCSVLEKVSKFEQREQGSQRPSVGG-SGFGH--- 807
Query: 101 TTKRPVTTRAPANTLGNDFD 120
RP T + ++T GNDF+
Sbjct: 808 -NYRPHRTVSTSSTSGNDFE 826
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 32.0 bits (71), Expect = 0.56
Identities = 49/248 (19%), Positives = 83/248 (33%), Gaps = 18/248 (7%)
Query: 24 SGDFDDFNLEDAVKETSSVKQPWDHTTTTTTNRPGT--TRAPAKPPGSGLDLADALDDQD 81
S D D ++A + + + + TT P AP +P G G L D
Sbjct: 365 SSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSS 424
Query: 82 DGRRKPGIGGRERWNHVTTTTKRPVTTRA----PA---------NTLGNDFDLADALDDR 128
+ E+ + TTK T +A PA ++ +D ++ +++
Sbjct: 425 SSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEK 484
Query: 129 NDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDD--PGSGMVAEPGT 186
+ ++KP GG + G + D ++ G G
Sbjct: 485 TSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAP 544
Query: 187 IAGVASAL-AMALIGAVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYST 245
A SAL A A +S ++KK + + + +N A E PQ K
Sbjct: 545 KANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIK 604
Query: 246 LHTQSAEP 253
L T + P
Sbjct: 605 LQTPNTFP 612
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 32.0 bits (71), Expect = 0.56
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 63 PAKPPGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAPANTLGNDFDLA 122
P PPG+ D + A D + G G + + T P+ + + L F
Sbjct: 197 PQTPPGAVPDPSLASTDSSEPSPLAGDGAPWSGSSMADTPMSPLLKGSLSQELSKSFLTL 256
Query: 123 DALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGGEYKPDK-GKGDGRYGSND 174
D R RR+ G GG+ D G GE P K G D + D
Sbjct: 257 TQPDRALVRTSSRREQRRGAGGYQPLDRR---GSGEPTPQKAGSSDSCFSGTD 306
>gi|7662010 zinc finger protein 516 [Homo sapiens]
Length = 1163
Score = 31.6 bits (70), Expect = 0.73
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 35 AVKETSSVKQPWDHTTTTTTNRPGTTRAPAKPPGSGLDLADALDDQDDGRRKPGIGGRER 94
++ E S QP + PG+ A A PGSGL A D ++G +P GG+ R
Sbjct: 558 SLSEGDSASQP---------SSPGSACAAADSPGSGLADEAAEDSGEEGAPEPAPGGQPR 608
Query: 95 ---WNHVTTTTKRPVTTRAPANTLGNDFDLADALDDRNDRDDGRRK 137
++ T+T+ +++ ++ +G D+ ++RD G K
Sbjct: 609 RCCFSEEVTSTE--LSSGDQSHKMG---------DNASERDTGESK 643
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 30.8 bits (68), Expect = 1.3
Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 39 TSSVKQPWDHTTTTTTNRPGTTRAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERW-NH 97
TS +K P +HT + P+ L L A+ + G G E++ +
Sbjct: 532 TSLLKSPLNHTQDA--------KLPSPLGNPALPLVSAVSNSSQGTTAAA-GPEEKFESR 582
Query: 98 VTTTTKRPVTTRAPANTLGNDFDLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGG 157
+ + + TR+ + G+DF+ D N G G D D++
Sbjct: 583 LEDSCVEKLKTRSSDMSDGSDFE------DVNTTTGTDLDTTTGTGSDLDSDVDS----- 631
Query: 158 EYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVA 191
PDK KG G+ G +A PG VA
Sbjct: 632 --DPDKDKGKGKSAEGQPKFGGGLAPPGAPNSVA 663
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 30.8 bits (68), Expect = 1.3
Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 39 TSSVKQPWDHTTTTTTNRPGTTRAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERW-NH 97
TS +K P +HT + P+ L L A+ + G G E++ +
Sbjct: 532 TSLLKSPLNHTQDA--------KLPSPLGNPALPLVSAVSNSSQGTTAAA-GPEEKFESR 582
Query: 98 VTTTTKRPVTTRAPANTLGNDFDLADALDDRNDRDDGRRKPIAGGGGFSDKDLEDIVGGG 157
+ + + TR+ + G+DF+ D N G G D D++
Sbjct: 583 LEDSCVEKLKTRSSDMSDGSDFE------DVNTTTGTDLDTTTGTGSDLDSDVDS----- 631
Query: 158 EYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVA 191
PDK KG G+ G +A PG VA
Sbjct: 632 --DPDKDKGKGKSAEGQPKFGGGLAPPGAPNSVA 663
>gi|4504971 LIM domain binding 2 isoform a [Homo sapiens]
Length = 373
Score = 29.6 bits (65), Expect = 2.8
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 72 DLADALDDQDDGRRKPGIGGRERWNHVTTTTKRPVTTRAP 111
D A+ +DD++D P +G WN T+ + P
Sbjct: 329 DAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPP 368
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 29.6 bits (65), Expect = 2.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 222 NADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPAR 261
++D + E E E P T T S+EP PPPEP R
Sbjct: 523 DSDGEEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPR 562
Score = 28.5 bits (62), Expect = 6.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 201 AVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPA 260
AV S+I QK IQ G + V E + PQ+ S T + EP P EPA
Sbjct: 445 AVKSFIE-TQKALLAEIQNGCKRNLVLAREREEKE-QPPQLSASMPETTATEPQPDDEPA 502
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 29.6 bits (65), Expect = 2.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 222 NADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPAR 261
++D + E E E P T T S+EP PPPEP R
Sbjct: 523 DSDGEEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPR 562
Score = 28.5 bits (62), Expect = 6.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 201 AVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPA 260
AV S+I QK IQ G + V E + PQ+ S T + EP P EPA
Sbjct: 445 AVKSFIE-TQKALLAEIQNGCKRNLVLAREREEKE-QPPQLSASMPETTATEPQPDDEPA 502
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 29.6 bits (65), Expect = 2.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 222 NADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPAR 261
++D + E E E P T T S+EP PPPEP R
Sbjct: 523 DSDGEEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPR 562
Score = 28.5 bits (62), Expect = 6.2
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 201 AVSSYISYQQKKFCFSIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPA 260
AV S+I QK IQ G + V E + PQ+ S T + EP P EPA
Sbjct: 445 AVKSFIE-TQKALLAEIQNGCKRNLVLAREREEKE-QPPQLSASMPETTATEPQPDDEPA 502
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 29.6 bits (65), Expect = 2.8
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 164 GKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIG--AVSSYISYQQKKFCFSIQQGL 221
G G G G + P A PG A A+A A A G A+ + Q Q L
Sbjct: 101 GGGGGTGGGHGGPHHH--AHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAAL 158
Query: 222 NADYVKGENLEAVVC----EEPQVKYSTLHTQSAEPPPPPEPARI 262
V G + A + P + YS Q A P P +P ++
Sbjct: 159 YGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKL 203
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 29.3 bits (64), Expect = 3.6
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 45 PWDHTTTTTTNRPGTTRAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERWNHVTTTTKR 104
P T T+ G P PP S + + Q DG++ GI ++ +T
Sbjct: 1262 PLMQVATPTSVSQGLPPPPPPPPPS--QQVNYIASQPDGKQLQGIPSSSHVSNNMSTPVL 1319
Query: 105 PVTTRAPANT 114
P T AP NT
Sbjct: 1320 PAPTAAPGNT 1329
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 29.3 bits (64), Expect = 3.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 36 VKETSSVKQPWDHTTTTTTNRPGTTRAPAK 65
++E S+ Q W ++ TT + PGTT AP +
Sbjct: 1576 LQEESTTFQSWPSSSDTTPSPPGTTAAPVE 1605
Score = 29.3 bits (64), Expect = 3.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 36 VKETSSVKQPWDHTTTTTTNRPGTTRAPAK 65
++E S+ Q W ++ TT + PGTT AP +
Sbjct: 3133 LQEESTTFQSWPSSSDTTPSPPGTTAAPVE 3162
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 29.3 bits (64), Expect = 3.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 36 VKETSSVKQPWDHTTTTTTNRPGTTRAPAK 65
++E S+ Q W ++ TT + PGTT AP +
Sbjct: 1063 LQEESTTFQSWPSSSDTTPSPPGTTAAPVE 1092
>gi|20070331 oxysterol binding protein-like 9 isoform e [Homo
sapiens]
Length = 736
Score = 29.3 bits (64), Expect = 3.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 103 KRPVTTRAPANTLGNDFDLADALDDRNDRDD 133
KRP TT + ++L N AD D +DRDD
Sbjct: 331 KRPDTTESLNSSLSNGTSDADLFDSHDDRDD 361
>gi|22547176 oxysterol binding protein-like 9 isoform f [Homo
sapiens]
Length = 746
Score = 29.3 bits (64), Expect = 3.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 103 KRPVTTRAPANTLGNDFDLADALDDRNDRDD 133
KRP TT + ++L N AD D +DRDD
Sbjct: 341 KRPDTTESLNSSLSNGTSDADLFDSHDDRDD 371
>gi|22547173 oxysterol binding protein-like 9 isoform d [Homo
sapiens]
Length = 723
Score = 29.3 bits (64), Expect = 3.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 103 KRPVTTRAPANTLGNDFDLADALDDRNDRDD 133
KRP TT + ++L N AD D +DRDD
Sbjct: 318 KRPDTTESLNSSLSNGTSDADLFDSHDDRDD 348
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,632,648
Number of Sequences: 37866
Number of extensions: 656279
Number of successful extensions: 3099
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2968
Number of HSP's gapped (non-prelim): 150
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.