Guide to the Human Genome
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Name: LOC284009 Sequence: fasta or formatted (157aa) NCBI GI: 70887661
Description:

hypothetical protein LOC284009

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         16           3
 C cysteine            3.8          6           1
 D aspartate           3.2          5           1
 E glutamate           3.2          5           1
 F phenylalanine       3.2          5           1
 G glycine             9.6         15           2
 H histidine           2.5          4           1
 I isoleucine          4.5          7           1
 K lysine              1.9          3           1
 L leucine            13.4         21           3
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline             7.6         12           2
 Q glutamine           3.8          6           1
 R arginine            9.6         15           2
 S serine             12.1         19           2
 T threonine           1.9          3           1
 V valine              4.5          7           2
 W tryptophan          3.2          5           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284009 
LOC100293274          0.023   PREDICTED: similar to hCG1994130 
LOC100290882          0.023   PREDICTED: hypothetical protein XP_002347835 
LOC100288781          0.023   PREDICTED: hypothetical protein XP_002343613 
LOC731282             0.017   PREDICTED: hypothetical protein 
LOC339192             0.010   PREDICTED: hypothetical protein 
LOC339192             0.010   PREDICTED: hypothetical protein 
LOC100293906          0.010   PREDICTED: hypothetical protein 
LOC100134253          0.010   PREDICTED: hypothetical protein 
LOC100294369          0.010   PREDICTED: hypothetical protein 
LOC100290887          0.010   PREDICTED: hypothetical protein XP_002348233 
LOC100287255          0.010   PREDICTED: hypothetical protein XP_002343655 
LOC100288550          0.010   PREDICTED: hypothetical protein XP_002342256 
COL11A2               0.010   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.010   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.010   collagen, type XI, alpha 2 isoform 1 preproprotein ...
STX16                 0.010   syntaxin 16 isoform c 
CARM1                 0.007   coactivator-associated arginine methyltransferase 1 ...
XCR1                  0.007   XC chemokine receptor 1 
XCR1                  0.007   XC chemokine receptor 1 
PPP1R15A              0.007   protein phosphatase 1, regulatory subunit 15A [Homo...
KIAA1161              0.007   hypothetical protein LOC57462 
ARAP3                 0.007   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
XRN1                  0.007   5'-3' exoribonuclease 1 isoform b 
XRN1                  0.007   5'-3' exoribonuclease 1 isoform a 
TNXB                  0.007   tenascin XB isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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