Guide to the Human Genome
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Name: LOC100288550 Sequence: fasta or formatted (113aa) NCBI GI: 239741578
Description:

PREDICTED: hypothetical protein XP_002342256

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         12           3
 C cysteine            0.9          1           1
 D aspartate           3.5          4           2
 E glutamate           3.5          4           1
 F phenylalanine       7.1          8           1
 G glycine             8.0          9           2
 H histidine           3.5          4           1
 I isoleucine          4.4          5           1
 K lysine              5.3          6           2
 L leucine             6.2          7           2
 M methionine          3.5          4           1
 N asparagine          1.8          2           1
 P proline             6.2          7           1
 Q glutamine           4.4          5           2
 R arginine            4.4          5           1
 S serine              8.8         10           2
 T threonine           4.4          5           1
 V valine             10.6         12           2
 W tryptophan          1.8          2           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342256 
LOC100134253          0.990   PREDICTED: hypothetical protein 
LOC100290887          0.990   PREDICTED: hypothetical protein XP_002348233 
NONO                  0.024   non-POU domain containing, octamer-binding isoform ...
NONO                  0.024   non-POU domain containing, octamer-binding isoform ...
NONO                  0.024   non-POU domain containing, octamer-binding isoform ...
NONO                  0.024   non-POU domain containing, octamer-binding isoform 1...
NSDHL                 0.024   NAD(P) dependent steroid dehydrogenase-like 
NSDHL                 0.024   NAD(P) dependent steroid dehydrogenase-like 
ING5                  0.015   inhibitor of growth family, member 5 
LOC284009             0.015   hypothetical protein LOC284009 
RNF219                0.010   ring finger protein 219 
MUC16                 0.005   mucin 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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