Guide to the Human Genome
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Name: LOC100288781 Sequence: fasta or formatted (388aa) NCBI GI: 239745900
Description:

PREDICTED: hypothetical protein XP_002343613

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         35           2
 C cysteine            1.3          5           1
 D aspartate           5.2         20           2
 E glutamate           5.4         21           2
 F phenylalanine       3.4         13           2
 G glycine             7.0         27           2
 H histidine           3.6         14           1
 I isoleucine          3.6         14           2
 K lysine              5.4         21           2
 L leucine             9.0         35           2
 M methionine          1.3          5           2
 N asparagine          2.1          8           2
 P proline            11.3         44           3
 Q glutamine           2.6         10           1
 R arginine            7.2         28           2
 S serine             10.1         39           2
 T threonine           4.1         16           2
 V valine              6.4         25           3
 W tryptophan          1.3          5           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343613 
LOC100293274          1.000   PREDICTED: similar to hCG1994130 
LOC100290882          1.000   PREDICTED: hypothetical protein XP_002347835 
RPS15A                0.235   ribosomal protein S15a 
RPS15A                0.235   ribosomal protein S15a 
LOC100291884          0.066   PREDICTED: similar to hCG1644591 
LOC100291442          0.066   PREDICTED: hypothetical protein XP_002347582 
LOC100286942          0.065   PREDICTED: hypothetical protein XP_002343414 
PRB2                  0.033   proline-rich protein BstNI subfamily 2 
APBB1IP               0.029   amyloid beta (A4) precursor protein-binding, family ...
OGFR                  0.026   opioid growth factor receptor 
WIPF1                 0.026   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.026   WAS/WASL interacting protein family, member 1 
PRB1                  0.026   proline-rich protein BstNI subfamily 1 isoform 1 pre...
LOC728503             0.026   PREDICTED: hypothetical protein 
LOC728503             0.026   PREDICTED: hypothetical protein 
LOC728503             0.026   PREDICTED: hypothetical protein 
C17orf96              0.025   hypothetical protein LOC100170841 
RTN4                  0.025   reticulon 4 isoform B 
DIAPH1                0.023   diaphanous 1 isoform 2 
DIAPH1                0.023   diaphanous 1 isoform 1 
DYRK1B                0.022   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.022   dual-specificity tyrosine-(Y)-phosphorylation regulat...
DYRK1B                0.022   dual-specificity tyrosine-(Y)-phosphorylation regulat...
C6orf132              0.022   PREDICTED: chromosome 6 open reading frame 132 [Hom...
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
C6orf132              0.022   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.022   PREDICTED: hypothetical protein LOC647024 
FMNL1                 0.022   formin-like 1 
LOC100291634          0.021   PREDICTED: hypothetical protein XP_002346062 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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