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Search of human proteins with 70780361
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|70780361 ankyrin 1 isoform 7 [Homo sapiens]
(109 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|70780361 ankyrin 1 isoform 7 [Homo sapiens] 221 7e-59
gi|70780366 ankyrin 1 isoform 5 [Homo sapiens] 203 3e-53
gi|215598566 ankyrin 1 isoform 10 [Homo sapiens] 203 3e-53
gi|215598574 ankyrin 1 isoform 9 [Homo sapiens] 69 6e-13
gi|70780353 ankyrin 1 isoform 4 [Homo sapiens] 69 6e-13
gi|70780359 ankyrin 1 isoform 1 [Homo sapiens] 64 3e-11
gi|70780357 ankyrin 1 isoform 3 [Homo sapiens] 64 3e-11
gi|70780355 ankyrin 1 isoform 2 [Homo sapiens] 64 3e-11
gi|188595682 ankyrin 2 isoform 3 [Homo sapiens] 39 0.001
gi|52426737 ankyrin 2 isoform 2 [Homo sapiens] 39 0.001
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 39 0.001
gi|146260268 Smith-Magenis syndrome chromosome region, candidate... 28 1.2
gi|194018501 C-type lectin domain family 12, member B isoform 1 ... 28 1.2
gi|194018499 C-type lectin domain family 12, member B isoform 2 ... 28 1.2
gi|19923669 sel-1 suppressor of lin-12-like [Homo sapiens] 28 1.6
gi|119120915 rhophilin 1 [Homo sapiens] 28 2.1
gi|239756382 PREDICTED: similar to KIAA1920 protein [Homo sapiens] 27 2.7
gi|148746195 trichohyalin [Homo sapiens] 27 4.6
gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens] 26 7.9
gi|154240671 HEAT repeat family member 7B2 [Homo sapiens] 26 7.9
gi|30794372 polybromo 1 isoform 1 [Homo sapiens] 26 7.9
gi|93102371 polybromo 1 isoform 2 [Homo sapiens] 26 7.9
gi|41281917 polybromo 1 isoform 4 [Homo sapiens] 26 7.9
>gi|70780361 ankyrin 1 isoform 7 [Homo sapiens]
Length = 109
Score = 221 bits (564), Expect = 7e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MWTFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEET 60
MWTFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEET
Sbjct: 1 MWTFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEET 60
Query: 61 ISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKKDHTSTPNP 109
ISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKKDHTSTPNP
Sbjct: 61 ISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKKDHTSTPNP 109
>gi|70780366 ankyrin 1 isoform 5 [Homo sapiens]
Length = 155
Score = 203 bits (516), Expect = 3e-53
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MWTFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEET 60
MWTFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEET
Sbjct: 1 MWTFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEET 60
Query: 61 ISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
ISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK
Sbjct: 61 ISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
>gi|215598566 ankyrin 1 isoform 10 [Homo sapiens]
Length = 156
Score = 203 bits (516), Expect = 3e-53
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MWTFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEET 60
MWTFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEET
Sbjct: 1 MWTFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEET 60
Query: 61 ISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
ISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK
Sbjct: 61 ISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
>gi|215598574 ankyrin 1 isoform 9 [Homo sapiens]
Length = 1897
Score = 69.3 bits (168), Expect = 6e-13
Identities = 42/86 (48%), Positives = 50/86 (58%), Gaps = 29/86 (33%)
Query: 46 KELGESEGLSDDEETISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK---- 101
++ G+ E + + + T T+VV+ GNEFQNIPGEQVTEEQFTDEQGNIVTKK
Sbjct: 1819 RQQGQEEQVQEAKNTF-TQVVQ------GNEFQNIPGEQVTEEQFTDEQGNIVTKKIIRK 1871
Query: 102 ------------------DHTSTPNP 109
DHTSTPNP
Sbjct: 1872 VVRQIDLSSADAAQEHEEDHTSTPNP 1897
>gi|70780353 ankyrin 1 isoform 4 [Homo sapiens]
Length = 1856
Score = 69.3 bits (168), Expect = 6e-13
Identities = 42/86 (48%), Positives = 50/86 (58%), Gaps = 29/86 (33%)
Query: 46 KELGESEGLSDDEETISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK---- 101
++ G+ E + + + T T+VV+ GNEFQNIPGEQVTEEQFTDEQGNIVTKK
Sbjct: 1778 RQQGQEEQVQEAKNTF-TQVVQ------GNEFQNIPGEQVTEEQFTDEQGNIVTKKIIRK 1830
Query: 102 ------------------DHTSTPNP 109
DHTSTPNP
Sbjct: 1831 VVRQIDLSSADAAQEHEEDHTSTPNP 1856
>gi|70780359 ankyrin 1 isoform 1 [Homo sapiens]
Length = 1881
Score = 63.5 bits (153), Expect = 3e-11
Identities = 34/56 (60%), Positives = 42/56 (75%), Gaps = 7/56 (12%)
Query: 46 KELGESEGLSDDEETISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
++ G+ E + + + T T+VV+ GNEFQNIPGEQVTEEQFTDEQGNIVTKK
Sbjct: 1778 RQQGQEEQVQEAKNTF-TQVVQ------GNEFQNIPGEQVTEEQFTDEQGNIVTKK 1826
>gi|70780357 ankyrin 1 isoform 3 [Homo sapiens]
Length = 1880
Score = 63.5 bits (153), Expect = 3e-11
Identities = 34/56 (60%), Positives = 42/56 (75%), Gaps = 7/56 (12%)
Query: 46 KELGESEGLSDDEETISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
++ G+ E + + + T T+VV+ GNEFQNIPGEQVTEEQFTDEQGNIVTKK
Sbjct: 1778 RQQGQEEQVQEAKNTF-TQVVQ------GNEFQNIPGEQVTEEQFTDEQGNIVTKK 1826
>gi|70780355 ankyrin 1 isoform 2 [Homo sapiens]
Length = 1719
Score = 63.5 bits (153), Expect = 3e-11
Identities = 34/56 (60%), Positives = 42/56 (75%), Gaps = 7/56 (12%)
Query: 46 KELGESEGLSDDEETISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
++ G+ E + + + T T+VV+ GNEFQNIPGEQVTEEQFTDEQGNIVTKK
Sbjct: 1616 RQQGQEEQVQEAKNTF-TQVVQ------GNEFQNIPGEQVTEEQFTDEQGNIVTKK 1664
>gi|188595682 ankyrin 2 isoform 3 [Homo sapiens]
Length = 1863
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 55 SDDEETISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
+D++ R+ F KG++ IP E VTEE++ DE G+ V KK
Sbjct: 1758 ADNQPETCERLDEDAAFEKGDDMPEIPPETVTEEEYIDEHGHTVVKK 1804
>gi|52426737 ankyrin 2 isoform 2 [Homo sapiens]
Length = 1872
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 55 SDDEETISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
+D++ R+ F KG++ IP E VTEE++ DE G+ V KK
Sbjct: 1767 ADNQPETCERLDEDAAFEKGDDMPEIPPETVTEEEYIDEHGHTVVKK 1813
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 55 SDDEETISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTKK 101
+D++ R+ F KG++ IP E VTEE++ DE G+ V KK
Sbjct: 3852 ADNQPETCERLDEDAAFEKGDDMPEIPPETVTEEEYIDEHGHTVVKK 3898
>gi|146260268 Smith-Magenis syndrome chromosome region, candidate 8
[Homo sapiens]
Length = 937
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 19 LVSCQNVMHIVRGSLCFVL-KHIHQELDKELGESEGLSDDEETISTRVVRRRVFLKGNEF 77
L ++ H+ RG LC++L I + L K+ + L +D + R+V ++ +
Sbjct: 335 LAQLSHIEHMFRGDLCYLLTSQIDRALLKQQHITNFLFEDFVEVDDRMVEKQESIPSKPS 394
Query: 78 QNIPGEQVTEE 88
Q+ P EE
Sbjct: 395 QDRPPSSSLEE 405
>gi|194018501 C-type lectin domain family 12, member B isoform 1
[Homo sapiens]
Length = 276
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 3 TFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELD---KELGESEGLSDDEE 59
T LL+ LV L + N ++ L + K I Q+ D ++LG S LS +EE
Sbjct: 48 TLCLMLLIGLVTLGMMFLQISNDINSDSEKLSQLQKTIQQQQDNLSQQLGNSNNLSMEEE 107
Query: 60 TISTRV 65
+ +++
Sbjct: 108 FLKSQI 113
>gi|194018499 C-type lectin domain family 12, member B isoform 2
[Homo sapiens]
Length = 232
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 3 TFVTQLLVTLVLLSFFLVSCQNVMHIVRGSLCFVLKHIHQELD---KELGESEGLSDDEE 59
T LL+ LV L + N ++ L + K I Q+ D ++LG S LS +EE
Sbjct: 48 TLCLMLLIGLVTLGMMFLQISNDINSDSEKLSQLQKTIQQQQDNLSQQLGNSNNLSMEEE 107
Query: 60 TISTRV 65
+ +++
Sbjct: 108 FLKSQI 113
>gi|19923669 sel-1 suppressor of lin-12-like [Homo sapiens]
Length = 794
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 45 DKELGESEGLSDDEE----TISTRVVRRRVFLKGNEFQNIPGEQVTEEQFTDEQGNIVTK 100
D+ L L+ DE T + RVV ++FL E + Q E+ ++G VT+
Sbjct: 30 DESLDSKTTLTSDESVKDHTTAGRVVAGQIFLDSEESELESSIQEEEDSLKSQEGESVTE 89
Query: 101 K-DHTSTPNP 109
+PNP
Sbjct: 90 DISFLESPNP 99
>gi|119120915 rhophilin 1 [Homo sapiens]
Length = 670
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 19 LVSCQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEETISTRVVRRRVFLK 73
L C ++ I G L IHQ++DKEL G + S VR V L+
Sbjct: 19 LQGCDSLTQIQCGQLQSRRAQIHQQIDKELQMRTGAENLYRATSNNRVRETVALE 73
>gi|239756382 PREDICTED: similar to KIAA1920 protein [Homo sapiens]
Length = 483
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 27 HIV--RGSLCFVLKHIHQELDKELGESEGLSDDEETISTRVVRRRVFLKGNEFQNIPGEQ 84
HI+ GSL +L+H H+ L E+ ++ L E ++ +++ L E ++ PGE
Sbjct: 71 HIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSGLP-VEHRDQPGEP 129
Query: 85 VTE 87
VTE
Sbjct: 130 VTE 132
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 42 QELDKELGESEGLSDDEETISTRVVRRR---VFLKGNEFQNIPGEQVTEEQFTDEQGN 96
QE ++EL E E S+ +E + R +RR ++ + E+Q + EEQ +G+
Sbjct: 142 QEQERELAEGEEQSEKQERLEQRDRQRRDEELWRQRQEWQEREERRAEEEQLQSCKGH 199
>gi|5803167 splicing factor 3a, subunit 3 [Homo sapiens]
Length = 501
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 86 TEEQFTDEQGNIVTKKDH 103
TEE++ D GN+V KK +
Sbjct: 475 TEEEYEDSSGNVVNKKTY 492
>gi|154240671 HEAT repeat family member 7B2 [Homo sapiens]
Length = 1585
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 35 FVLKHIHQELDKELGESEGLSDDEETISTRV 65
F +K IH E+++ G EGL D+ + ++
Sbjct: 958 FYIKGIHLEVERLQGLQEGLESDDVQVQIKI 988
>gi|30794372 polybromo 1 isoform 1 [Homo sapiens]
Length = 1602
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 22 CQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEETISTRVVRR 68
C+N ++ +L + KH+H +++KE E +E+ + +R
Sbjct: 848 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKR 894
>gi|93102371 polybromo 1 isoform 2 [Homo sapiens]
Length = 1582
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 22 CQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEETISTRVVRR 68
C+N ++ +L + KH+H +++KE E +E+ + +R
Sbjct: 880 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKR 926
>gi|41281917 polybromo 1 isoform 4 [Homo sapiens]
Length = 1582
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 22 CQNVMHIVRGSLCFVLKHIHQELDKELGESEGLSDDEETISTRVVRR 68
C+N ++ +L + KH+H +++KE E +E+ + +R
Sbjct: 880 CKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEEDKLKREEEKR 926
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,878
Number of Sequences: 37866
Number of extensions: 164820
Number of successful extensions: 538
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 33
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.