Guide to the Human Genome
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Name: ANK1 Sequence: fasta or formatted (155aa) NCBI GI: 70780366
Description:

ankyrin 1 isoform 5

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [156aa] ankyrin 1 isoform 10
alt prot [1897aa] ankyrin 1 isoform 9
alt prot [1856aa] ankyrin 1 isoform 4
alt prot [1719aa] ankyrin 1 isoform 2
alt prot [1880aa] ankyrin 1 isoform 3
alt prot [1881aa] ankyrin 1 isoform 1
alt prot [109aa] ankyrin 1 isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2          5           2
 C cysteine            1.3          2           1
 D aspartate           4.5          7           2
 E glutamate          10.3         16           2
 F phenylalanine       4.5          7           2
 G glycine             7.1         11           1
 H histidine           2.6          4           1
 I isoleucine          6.5         10           2
 K lysine              6.5         10           2
 L leucine            11.0         17           2
 M methionine          1.3          2           1
 N asparagine          2.6          4           1
 P proline             1.3          2           1
 Q glutamine           7.7         12           1
 R arginine            7.1         11           3
 S serine              6.5         10           2
 T threonine           5.2          8           1
 V valine             10.3         16           2
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin 1 isoform 5 
ANK1                  0.802   ankyrin 1 isoform 10 
ANK1                  0.640   ankyrin 1 isoform 7 
ANK1                  0.496   ankyrin 1 isoform 3 
ANK1                  0.299   ankyrin 1 isoform 1 
ANK1                  0.299   ankyrin 1 isoform 2 
ANK1                  0.281   ankyrin 1 isoform 9 
ANK1                  0.281   ankyrin 1 isoform 4 
ANK2                  0.119   ankyrin 2 isoform 3 
ANK2                  0.119   ankyrin 2 isoform 2 
ANK2                  0.119   ankyrin 2 isoform 1 
RALBP1                0.025   ralA binding protein 1 
CIT                   0.011   citron 
HIRIP3                0.011   HIRA interacting protein 3 
SMCR8                 0.011   Smith-Magenis syndrome chromosome region, candidate...
CLEC12B               0.011   C-type lectin domain family 12, member B isoform 1 ...
CLEC12B               0.011   C-type lectin domain family 12, member B isoform 2 ...
SF3A3                 0.011   splicing factor 3a, subunit 3 
MYH13                 0.011   myosin, heavy polypeptide 13, skeletal muscle [Homo...
ARHGAP19              0.011   Rho GTPase activating protein 19 
RHPN1                 0.011   rhophilin 1 
C17orf57              0.011   hypothetical protein LOC124989 
KTN1                  0.007   kinectin 1 isoform a 
KTN1                  0.007   kinectin 1 isoform c 
KTN1                  0.007   kinectin 1 isoform a 
LOC100291610          0.007   PREDICTED: similar to KIAA1920 protein 
STX4                  0.007   syntaxin 4 
SEL1L                 0.007   sel-1 suppressor of lin-12-like 
NUCB2                 0.007   nucleobindin 2 
TCHH                  0.007   trichohyalin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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