Guide to the Human Genome
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Name: LOC100291610 Sequence: fasta or formatted (483aa) NCBI GI: 239756382
Description:

PREDICTED: similar to KIAA1920 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         30           2
 C cysteine            2.3         11           1
 D aspartate           5.4         26           2
 E glutamate           6.2         30           2
 F phenylalanine       3.7         18           1
 G glycine             7.2         35           2
 H histidine           4.1         20           1
 I isoleucine          2.9         14           2
 K lysine              1.7          8           1
 L leucine            10.8         52           2
 M methionine          2.9         14           2
 N asparagine          2.3         11           1
 P proline             7.2         35           2
 Q glutamine           7.5         36           2
 R arginine            3.1         15           1
 S serine              5.8         28           1
 T threonine           7.5         36           2
 V valine              9.7         47           2
 W tryptophan          1.9          9           2
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to KIAA1920 protein 
CSPG4                 0.777   chondroitin sulfate proteoglycan 4 
FREM1                 0.020   FRAS1 related extracellular matrix 1 
FRAS1                 0.019   Fraser syndrome 1 
FREM2                 0.016   FRAS1-related extracellular matrix protein 2 precurs...
FREM3                 0.013   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.013   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.013   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
BRIP1                 0.007   BRCA1 interacting protein C-terminal helicase 1 [Hom...
ZNF652                0.006   zinc finger protein 652 
ZNF652                0.006   zinc finger protein 652 
MUC16                 0.005   mucin 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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