Guide to the Human Genome
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Name: RAP1GDS1 Sequence: fasta or formatted (607aa) NCBI GI: 155030196
Description:

RAP1, GTP-GDP dissociation stimulator 1 isoform 3

Referenced in:

Additional Interaction Domain Families
Ras

Other entries for this name:
alt prot [608aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 1
alt prot [607aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 2
alt prot [559aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 4
alt prot [558aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 5
alt prot [516aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         60           2
 C cysteine            2.3         14           1
 D aspartate           5.3         32           2
 E glutamate           8.1         49           2
 F phenylalanine       2.1         13           1
 G glycine             4.9         30           2
 H histidine           2.5         15           1
 I isoleucine          5.9         36           2
 K lysine              6.8         41           2
 L leucine            15.0         91           4
 M methionine          3.1         19           1
 N asparagine          4.9         30           2
 P proline             1.8         11           2
 Q glutamine           5.4         33           2
 R arginine            2.8         17           1
 S serine              6.9         42           2
 T threonine           3.8         23           1
 V valine              7.6         46           2
 W tryptophan          0.3          2           1
 Y tyrosine            0.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAP1, GTP-GDP dissociation stimulator 1 isoform 3 [... 
RAP1GDS1              0.998   RAP1, GTP-GDP dissociation stimulator 1 isoform 1 [...
RAP1GDS1              0.993   RAP1, GTP-GDP dissociation stimulator 1 isoform 2 [...
RAP1GDS1              0.888   RAP1, GTP-GDP dissociation stimulator 1 isoform 5 [...
RAP1GDS1              0.887   RAP1, GTP-GDP dissociation stimulator 1 isoform 4 [...
RAP1GDS1              0.646   RAP1, GTP-GDP dissociation stimulator 1 isoform 6 [...
ARMC3                 0.026   armadillo repeat containing 3 
KPNA7                 0.020   karyopherin 7 
ARMC4                 0.019   armadillo repeat containing 4 
KPNA5                 0.018   karyopherin alpha 5 
KPNA2                 0.017   karyopherin alpha 2 
CTNND2                0.013   catenin (cadherin-associated protein), delta 2 (neur...
TMCO6                 0.012   transmembrane and coiled-coil domains 6 
ANKAR                 0.011   ankyrin and armadillo repeat containing 
JUP                   0.011   junction plakoglobin 
JUP                   0.011   junction plakoglobin 
SPAG6                 0.011   sperm associated antigen 6 isoform 1 
SPAG6                 0.011   sperm associated antigen 6 isoform 2 
CTNNB1                0.011   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.011   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.011   catenin (cadherin-associated protein), beta 1, 88kDa ...
ARMC6                 0.011   armadillo repeat containing 6 
ATXN10                0.010   ataxin 10 
KPNA4                 0.009   karyopherin alpha 4 
KPNA1                 0.008   karyopherin alpha 1 
CTNND1                0.008   catenin, delta 1 isoform 3A 
CTNND1                0.008   catenin, delta 1 isoform 3A 
CTNND1                0.008   catenin, delta 1 isoform 3A 
CTNND1                0.008   catenin, delta 1 isoform 3AC 
CTNND1                0.008   catenin, delta 1 isoform 3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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