Guide to the Human Genome
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Name: SIL1 Sequence: fasta or formatted (461aa) NCBI GI: 11968009
Description:

SIL1 protein precursor

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [461aa] SIL1 protein precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         38           2
 C cysteine            1.1          5           1
 D aspartate           3.7         17           1
 E glutamate          10.8         50           3
 F phenylalanine       3.9         18           1
 G glycine             5.0         23           2
 H histidine           2.0          9           1
 I isoleucine          2.2         10           1
 K lysine              6.7         31           3
 L leucine            15.8         73           2
 M methionine          2.2         10           1
 N asparagine          3.3         15           2
 P proline             3.5         16           1
 Q glutamine           6.9         32           2
 R arginine            4.6         21           1
 S serine              5.6         26           5
 T threonine           5.2         24           2
 V valine              6.3         29           2
 W tryptophan          0.7          3           1
 Y tyrosine            2.4         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SIL1 protein precursor 
SIL1                  1.000   SIL1 protein precursor 
HSPBP1                0.033   hsp70-interacting protein 
HSPBP1                0.033   hsp70-interacting protein 
RAD50                 0.019   RAD50 homolog isoform 2 
RAD50                 0.019   RAD50 homolog isoform 1 
RASAL2                0.017   RAS protein activator like 2 isoform 2 
RASAL2                0.017   RAS protein activator like 2 isoform 1 
SPAG6                 0.017   sperm associated antigen 6 isoform 1 
SPAG6                 0.017   sperm associated antigen 6 isoform 2 
CROCC                 0.014   ciliary rootlet coiled-coil 
KIF5B                 0.014   kinesin family member 5B 
LCA5                  0.014   Leber congenital amaurosis 5 
LCA5                  0.014   Leber congenital amaurosis 5 
MYH3                  0.013   myosin, heavy chain 3, skeletal muscle, embryonic [H...
HOOK1                 0.013   hook homolog 1 
ARMCX3                0.011   armadillo repeat containing, X-linked 3 
ARMCX3                0.011   armadillo repeat containing, X-linked 3 
ARMCX3                0.011   armadillo repeat containing, X-linked 3 
MYH13                 0.011   myosin, heavy polypeptide 13, skeletal muscle [Homo...
RBMX2                 0.011   RNA binding motif protein, X-linked 2 
CHD1                  0.011   chromodomain helicase DNA binding protein 1 
PPFIBP1               0.010   PTPRF interacting protein binding protein 1 isoform ...
KIF5C                 0.010   kinesin family member 5C 
DAB2IP                0.010   disabled homolog 2 interacting protein isoform 2 [Ho...
CCDC79                0.010   coiled-coil domain containing 79 
NEXN                  0.010   nexilin (F actin binding protein) 
RNF123                0.009   ring finger protein 123 
ZNF292                0.009   zinc finger protein 292 
ARMCX2                0.009   ALEX2 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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