Guide to the Human Genome
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Name: RAP1GDS1 Sequence: fasta or formatted (559aa) NCBI GI: 155030198
Description:

RAP1, GTP-GDP dissociation stimulator 1 isoform 4

Referenced in:

Additional Interaction Domain Families
Ras

Other entries for this name:
alt prot [608aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 1
alt prot [607aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 2
alt prot [607aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 3
alt prot [558aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 5
alt prot [516aa] RAP1, GTP-GDP dissociation stimulator 1 isoform 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         57           2
 C cysteine            2.1         12           1
 D aspartate           5.0         28           2
 E glutamate           8.2         46           2
 F phenylalanine       2.1         12           1
 G glycine             4.7         26           2
 H histidine           2.5         14           1
 I isoleucine          5.9         33           2
 K lysine              7.2         40           2
 L leucine            15.4         86           4
 M methionine          3.0         17           1
 N asparagine          4.7         26           2
 P proline             1.8         10           2
 Q glutamine           5.5         31           2
 R arginine            2.7         15           1
 S serine              6.8         38           2
 T threonine           3.8         21           1
 V valine              7.7         43           2
 W tryptophan          0.4          2           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAP1, GTP-GDP dissociation stimulator 1 isoform 4 [... 
RAP1GDS1              0.996   RAP1, GTP-GDP dissociation stimulator 1 isoform 5 [...
RAP1GDS1              0.978   RAP1, GTP-GDP dissociation stimulator 1 isoform 1 [...
RAP1GDS1              0.974   RAP1, GTP-GDP dissociation stimulator 1 isoform 3 [...
RAP1GDS1              0.971   RAP1, GTP-GDP dissociation stimulator 1 isoform 2 [...
RAP1GDS1              0.866   RAP1, GTP-GDP dissociation stimulator 1 isoform 6 [...
KPNA5                 0.033   karyopherin alpha 5 
KPNA1                 0.031   karyopherin alpha 1 
ARMC3                 0.029   armadillo repeat containing 3 
KPNA2                 0.028   karyopherin alpha 2 
KPNA7                 0.026   karyopherin 7 
KPNA6                 0.023   karyopherin alpha 6 
TMCO6                 0.016   transmembrane and coiled-coil domains 6 
ANKAR                 0.015   ankyrin and armadillo repeat containing 
CTNND2                0.014   catenin (cadherin-associated protein), delta 2 (neur...
PKP4                  0.014   plakophilin 4 isoform b 
PKP4                  0.014   plakophilin 4 isoform a 
ARMC4                 0.012   armadillo repeat containing 4 
SPAG6                 0.012   sperm associated antigen 6 isoform 1 
SPAG6                 0.012   sperm associated antigen 6 isoform 2 
KPNA4                 0.012   karyopherin alpha 4 
CTNND1                0.012   catenin, delta 1 isoform 3A 
CTNND1                0.012   catenin, delta 1 isoform 3A 
CTNND1                0.012   catenin, delta 1 isoform 3A 
CTNND1                0.012   catenin, delta 1 isoform 3AC 
CTNND1                0.012   catenin, delta 1 isoform 3B 
CTNND1                0.012   catenin, delta 1 isoform 3AB 
CTNND1                0.012   catenin, delta 1 isoform 3ABC 
CTNND1                0.012   catenin, delta 1 isoform 1A 
CTNND1                0.012   catenin, delta 1 isoform 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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