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Search of human proteins with 6912574
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912574 pallidin [Homo sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912574 pallidin [Homo sapiens] 340 4e-94
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 42 3e-04
gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa... 42 3e-04
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 42 3e-04
gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo sa... 42 3e-04
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 41 6e-04
gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1 [... 41 6e-04
gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2 [... 41 6e-04
gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3 [... 41 6e-04
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 40 8e-04
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 40 8e-04
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 40 0.001
gi|116812577 LUC7-like 2 [Homo sapiens] 39 0.002
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens] 39 0.002
gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens] 39 0.002
gi|45439327 periplakin [Homo sapiens] 39 0.003
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 38 0.004
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom... 38 0.004
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo... 38 0.004
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo... 38 0.004
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 37 0.006
gi|156104908 myosin heavy chain 6 [Homo sapiens] 37 0.006
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 37 0.008
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 37 0.008
gi|156119615 myosin IXA [Homo sapiens] 37 0.008
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 37 0.008
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 37 0.008
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 37 0.008
gi|33188449 serine/arginine-rich protein-specific kinase 2 isofo... 37 0.011
gi|33188447 serine/arginine-rich protein-specific kinase 2 isofo... 37 0.011
>gi|6912574 pallidin [Homo sapiens]
Length = 172
Score = 340 bits (872), Expect = 4e-94
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHY 60
MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHY
Sbjct: 1 MSVPGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHY 60
Query: 61 LPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRK 120
LPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRK
Sbjct: 61 LPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRK 120
Query: 121 EMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM 172
EMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM
Sbjct: 121 EMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPAKRM 172
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 42.0 bits (97), Expect = 3e-04
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 45 EDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINAL 104
E AVEQ AE + + R+++ L EL+ N+ L QE+ K
Sbjct: 486 EASAVEQTAESCEVQEMLKVARAEKDLLELSCNE------LRQELLKAN----------- 528
Query: 105 FAEAKHYHAKLVNIRKEMLMLHE----KTSKLKKRALKLQQKRQKEELEREQQREKEFER 160
E KH + L + K+ L E + +L + +LKLQ+K + + E + +E FE
Sbjct: 529 -GEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFEL 587
Query: 161 EKQLTARPAKRM 172
E Q+ A ++
Sbjct: 588 EDQVEQHRAVKL 599
>gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo
sapiens]
Length = 709
Score = 42.0 bits (97), Expect = 3e-04
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 45 EDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINAL 104
E AVEQ AE + + R+++ L EL+ N+ L QE+ K
Sbjct: 486 EASAVEQTAESCEVQEMLKVARAEKDLLELSCNE------LRQELLKAN----------- 528
Query: 105 FAEAKHYHAKLVNIRKEMLMLHE----KTSKLKKRALKLQQKRQKEELEREQQREKEFER 160
E KH + L + K+ L E + +L + +LKLQ+K + + E + +E FE
Sbjct: 529 -GEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFEL 587
Query: 161 EKQLTARPAKRM 172
E Q+ A ++
Sbjct: 588 EDQVEQHRAVKL 599
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 42.0 bits (97), Expect = 3e-04
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 45 EDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINAL 104
E AVEQ AE + + R+++ L EL+ N+ L QE+ K
Sbjct: 567 EASAVEQTAESCEVQEMLKVARAEKDLLELSCNE------LRQELLKAN----------- 609
Query: 105 FAEAKHYHAKLVNIRKEMLMLHE----KTSKLKKRALKLQQKRQKEELEREQQREKEFER 160
E KH + L + K+ L E + +L + +LKLQ+K + + E + +E FE
Sbjct: 610 -GEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFEL 668
Query: 161 EKQLTARPAKRM 172
E Q+ A ++
Sbjct: 669 EDQVEQHRAVKL 680
>gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo
sapiens]
Length = 790
Score = 42.0 bits (97), Expect = 3e-04
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 45 EDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINAL 104
E AVEQ AE + + R+++ L EL+ N+ L QE+ K
Sbjct: 567 EASAVEQTAESCEVQEMLKVARAEKDLLELSCNE------LRQELLKAN----------- 609
Query: 105 FAEAKHYHAKLVNIRKEMLMLHE----KTSKLKKRALKLQQKRQKEELEREQQREKEFER 160
E KH + L + K+ L E + +L + +LKLQ+K + + E + +E FE
Sbjct: 610 -GEIKHVSSLLAKVEKDYSYLKEICDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFEL 668
Query: 161 EKQLTARPAKRM 172
E Q+ A ++
Sbjct: 669 EDQVEQHRAVKL 680
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 40.8 bits (94), Expect = 6e-04
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 13/81 (16%)
Query: 83 DTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQK 142
D + +EISKF++ H L+ E K K R+E+ EK + ++R + +++
Sbjct: 275 DLISREISKFRDTHKKLE------EEK---GKKEKERQEI----EKERRERERERERERE 321
Query: 143 RQKEELEREQQREKEFEREKQ 163
R++ E ERE++RE+E E+E++
Sbjct: 322 RREREREREREREREKEKERE 342
Score = 31.6 bits (70), Expect = 0.35
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 127 EKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQ 163
E++S K + ++K + E ERE++RE+E ERE++
Sbjct: 372 ERSSDRNKDRSRSREKSRDRERERERERERERERERE 408
Score = 30.4 bits (67), Expect = 0.79
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 120 KEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQ 163
K+ EK+ ++ + +++ ++ E ERE++RE+E ERE++
Sbjct: 379 KDRSRSREKSRDRERERERERERERERERERERERERERERERE 422
Score = 29.6 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 133 KKRALKLQQKRQKE-ELEREQQREKEFEREK 162
++R + +++R++E E ERE++RE+E EREK
Sbjct: 397 REREREREREREREREREREREREREREREK 427
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/32 (40%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
Query: 133 KKRALKLQQKRQKE-ELEREQQREKEFEREKQ 163
++R + +++R++E E ERE++RE+E ERE++
Sbjct: 393 RERERERERERERERERERERERERERERERE 424
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/32 (40%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
Query: 133 KKRALKLQQKRQKE-ELEREQQREKEFEREKQ 163
++R + +++R++E E ERE++RE+E ERE++
Sbjct: 395 RERERERERERERERERERERERERERERERE 426
Score = 28.1 bits (61), Expect = 3.9
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 119 RKEMLMLHEKTSKLKKRAL--KLQQKRQKEELEREQQREKEFEREKQLTARPAKRM 172
RK L EK + ++R +++++++ E E+E +RE+E RE A+ AKR+
Sbjct: 444 RKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRRE---MAKEAKRL 496
Score = 27.7 bits (60), Expect = 5.1
Identities = 12/32 (37%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
Query: 133 KKRALKLQQKRQKE-ELEREQQREKEFEREKQ 163
++R + +++R++E E ERE++RE+E E++K+
Sbjct: 399 REREREREREREREREREREREREREREKDKK 430
>gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1
[Homo sapiens]
Length = 871
Score = 40.8 bits (94), Expect = 6e-04
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 72 QELTQNQVVLLDTLEQEISKFKEC--HSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKT 129
QELTQ Q + L++++++ + + D EA+ HAK V +++ +
Sbjct: 677 QELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQE 736
Query: 130 SKLKKRALKLQQKRQKEELEREQQREKEFEREKQL 164
+ + +LQ++ +KEE +R +R +E ER+K L
Sbjct: 737 KERSQELRRLQEEARKEEGQRLARRLQELERDKNL 771
>gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2
[Homo sapiens]
Length = 835
Score = 40.8 bits (94), Expect = 6e-04
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 72 QELTQNQVVLLDTLEQEISKFKEC--HSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKT 129
QELTQ Q + L++++++ + + D EA+ HAK V +++ +
Sbjct: 641 QELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQE 700
Query: 130 SKLKKRALKLQQKRQKEELEREQQREKEFEREKQL 164
+ + +LQ++ +KEE +R +R +E ER+K L
Sbjct: 701 KERSQELRRLQEEARKEEGQRLARRLQELERDKNL 735
>gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3
[Homo sapiens]
Length = 782
Score = 40.8 bits (94), Expect = 6e-04
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 72 QELTQNQVVLLDTLEQEISKFKEC--HSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKT 129
QELTQ Q + L++++++ + + D EA+ HAK V +++ +
Sbjct: 588 QELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQE 647
Query: 130 SKLKKRALKLQQKRQKEELEREQQREKEFEREKQL 164
+ + +LQ++ +KEE +R +R +E ER+K L
Sbjct: 648 KERSQELRRLQEEARKEEGQRLARRLQELERDKNL 682
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 40.4 bits (93), Expect = 8e-04
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 21 EAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELT--QNQ 78
E E T L D + +E + IE K ++Q LLS D + ++ EL + +
Sbjct: 266 ELEEKTEQLLDCKQE---LEQMEIELKRLQQENMNLLS----DARSARMYRDELDALREK 318
Query: 79 VVLLDTLEQEISKFKE-CHSMLDINALFAEAKHYHAKLVNIRKEML--------MLHEKT 129
V +D LE E+S++KE H + A E K + L+ K ML +K
Sbjct: 319 AVRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLET-KTMLEDQLEGTRARSDKL 377
Query: 130 SKLKKRALKLQQKRQKEELEREQQREK-EFEREKQLTARPAKR 171
+L+K L+L+ K E+ER+ R+K E E+ +T A++
Sbjct: 378 HELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQK 420
Score = 38.5 bits (88), Expect = 0.003
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 38 LIEDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHS 97
++E+ +++K Q + L + + + ++ ++ L +N + LEQE + S
Sbjct: 509 ILENEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEHLNQTVS 568
Query: 98 MLDINALFAEAKHYHAKLVNIRKEMLMLHE-------KTSKL--KKRALKLQQKRQKEEL 148
L + + A++ +I KE +LHE K SK+ +KR +K + + KE+
Sbjct: 569 SLRQRSQISA----EARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKG 624
Query: 149 EREQQREKE---FEREKQL 164
ER ++ E E E+E +L
Sbjct: 625 ERAEELENELHHLEKENEL 643
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 40.4 bits (93), Expect = 8e-04
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 21 EAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELT--QNQ 78
E E T L D + +E + IE K ++Q LLS D + ++ EL + +
Sbjct: 266 ELEEKTEQLLDCKQE---LEQMEIELKRLQQENMNLLS----DARSARMYRDELDALREK 318
Query: 79 VVLLDTLEQEISKFKE-CHSMLDINALFAEAKHYHAKLVNIRKEML--------MLHEKT 129
V +D LE E+S++KE H + A E K + L+ K ML +K
Sbjct: 319 AVRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLET-KTMLEDQLEGTRARSDKL 377
Query: 130 SKLKKRALKLQQKRQKEELEREQQREK-EFEREKQLTARPAKR 171
+L+K L+L+ K E+ER+ R+K E E+ +T A++
Sbjct: 378 HELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQK 420
Score = 38.5 bits (88), Expect = 0.003
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 38 LIEDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHS 97
++E+ +++K Q + L + + + ++ ++ L +N + LEQE + S
Sbjct: 509 ILENEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEHLNQTVS 568
Query: 98 MLDINALFAEAKHYHAKLVNIRKEMLMLHE-------KTSKL--KKRALKLQQKRQKEEL 148
L + + A++ +I KE +LHE K SK+ +KR +K + + KE+
Sbjct: 569 SLRQRSQISA----EARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKG 624
Query: 149 EREQQREKE---FEREKQL 164
ER ++ E E E+E +L
Sbjct: 625 ERAEELENELHHLEKENEL 643
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 40.0 bits (92), Expect = 0.001
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 60 YLPDLQRSKQALQELTQNQVVLLDTL---EQEISKFKECHSM----------------LD 100
Y+ +LQ+ K ++ ELTQ L + L EQ+ +K +E H+ LD
Sbjct: 286 YVQELQKLKSSVNELTQKNQTLTENLLKKEQDYTKLEEKHNEESVSKKNIQATLHQKDLD 345
Query: 101 INALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFER 160
L + L I E+ E T KLK+ +++ K Q + E +Q +++ E+
Sbjct: 346 CQQLQSRLSASETSLHRIHVELSEKGEATQKLKEELSEVETKYQHLKAEFKQLQQQREEK 405
Query: 161 EK 162
E+
Sbjct: 406 EQ 407
Score = 32.0 bits (71), Expect = 0.27
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 15/139 (10%)
Query: 40 EDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHS-- 97
E L+ E K + + + +LQ+ K + L + D L + K S
Sbjct: 817 ETLSQETKIQHEELNNRIQTTVTELQKVKMEKEALMTELSTVKDKLSKVSDSLKNSKSEF 876
Query: 98 ----------MLDINALFAEAKHY-HAKLVNIRKEMLMLHEKTSKLKKRA--LKLQQKRQ 144
+LD+ E KH ++ N KE L + K K+ + LKL+
Sbjct: 877 EKENQKGKAAILDLEKTCKELKHQLQVQMENTLKEQKELKKSLEKEKEASHQLKLELNSM 936
Query: 145 KEELEREQQREKEFEREKQ 163
+E+L + Q K+ E+E+Q
Sbjct: 937 QEQLIQAQNTLKQNEKEEQ 955
Score = 29.6 bits (65), Expect = 1.3
Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 14/147 (9%)
Query: 31 DTSPDEGLIEDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEI- 89
+ PD GL+ D + E +++EQ E + Q +++L + + L T +I
Sbjct: 123 EAKPD-GLVTDSSAELQSLEQQLEEAQTENFNIKQ-----MKDLFEQKAAQLATEIADIK 176
Query: 90 SKFKECHSMLD-----INALFAEAKHYHAKLVNIRKEMLMLH--EKTSKLKKRALKLQQK 142
SK+ E S+ + + L E + +++ E+L E + LKK +++Q
Sbjct: 177 SKYDEERSLREAAEQKVTRLTEELNKEATVIQDLKTELLQRPGIEDVAVLKKELVQVQTL 236
Query: 143 RQKEELEREQQREKEFEREKQLTARPA 169
LERE++ EK + K+L ++ A
Sbjct: 237 MDNMTLERERESEKLKDECKKLQSQYA 263
Score = 29.3 bits (64), Expect = 1.8
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 39 IEDLTIEDKAVEQL---AEGLLSHYLPDLQR----SKQALQELTQNQVVLLDTLEQEISK 91
+ L I+ KA +L AE + DLQ ++ ALQ+ Q + L+Q +K
Sbjct: 637 VSQLDIQIKAKTELLLSAEAAKTAQRADLQNHLDTAQNALQDKQQELNKITTQLDQVTAK 696
Query: 92 FKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSKL-----KKRALKLQQKRQKE 146
++ + L +++ L L +KT +L K A L+ K KE
Sbjct: 697 LQDKQE---------HCSQLESHLKEYKEKYLSLEQKTEELEGQIKKLEADSLEVKASKE 747
Query: 147 ELEREQQREKEFEREKQLTA 166
+ ++ Q++++ + +L A
Sbjct: 748 QALQDLQQQRQLNTDLELRA 767
>gi|116812577 LUC7-like 2 [Homo sapiens]
Length = 392
Score = 39.3 bits (90), Expect = 0.002
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 68 KQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAE-AKHYHAKLVNIRKEMLMLH 126
K+ +E+ +N + +Q++ + C + L ++ A H+ KL + +
Sbjct: 166 KREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKL---HLGFIEIR 222
Query: 127 EKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTAR 167
EK +LK+ + Q+KR +E L+R ++RE+E EREK +R
Sbjct: 223 EKLEELKRVVAEKQEKRNQERLKRREERERE-EREKLRRSR 262
>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
Length = 1220
Score = 38.9 bits (89), Expect = 0.002
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 33/141 (23%)
Query: 34 PDEGLIED----------LTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLD 83
P+E ++ED +T EDK E G L +L++ +QAL E + + L
Sbjct: 330 PEEPVLEDEQQQLEKKLPVTFEDKKRENFERGNL-----ELEKRRQALLEQQRKEQERLA 384
Query: 84 TLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQKR 143
LE+ + KE + RK L L ++ K ++ + +++R
Sbjct: 385 QLERAEQERKE-----------------RERQEQERKRQLELEKQLEKQRELERQREEER 427
Query: 144 QKEELEREQQREKEFEREKQL 164
+KE +ER + ++E ER++QL
Sbjct: 428 RKE-IERREAAKRELERQRQL 447
Score = 33.1 bits (74), Expect = 0.12
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 51 QLAEGLLSHYLPDLQRSKQALQELTQNQ------VVLLDTLEQEISKFKECHSMLDINAL 104
Q ++ +L +P+ Q L+++ QN V L LE + + LD
Sbjct: 532 QESQQMLGRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEK 591
Query: 105 FAEAKHYHAKLVNIR-KEMLMLHEKTSKLKKRALKLQQKRQKE--------ELEREQQRE 155
+K + N + KE+ +H K K+++++ ++ +QKE E ++E+ +
Sbjct: 592 ETRSKLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQKEEAQR 651
Query: 156 KEFEREKQ 163
+ ER+KQ
Sbjct: 652 RAQERDKQ 659
>gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]
Length = 1721
Score = 38.9 bits (89), Expect = 0.002
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 33/141 (23%)
Query: 34 PDEGLIED----------LTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLD 83
P+E ++ED +T EDK E G L +L++ +QAL E + + L
Sbjct: 330 PEEPVLEDEQQQLEKKLPVTFEDKKRENFERGNL-----ELEKRRQALLEQQRKEQERLA 384
Query: 84 TLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQKR 143
LE+ + KE + RK L L ++ K ++ + +++R
Sbjct: 385 QLERAEQERKE-----------------RERQEQERKRQLELEKQLEKQRELERQREEER 427
Query: 144 QKEELEREQQREKEFEREKQL 164
+KE +ER + ++E ER++QL
Sbjct: 428 RKE-IERREAAKRELERQRQL 447
Score = 33.1 bits (74), Expect = 0.12
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 51 QLAEGLLSHYLPDLQRSKQALQELTQNQ------VVLLDTLEQEISKFKECHSMLDINAL 104
Q ++ +L +P+ Q L+++ QN V L LE + + LD
Sbjct: 532 QESQQMLGRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEK 591
Query: 105 FAEAKHYHAKLVNIR-KEMLMLHEKTSKLKKRALKLQQKRQKE--------ELEREQQRE 155
+K + N + KE+ +H K K+++++ ++ +QKE E ++E+ +
Sbjct: 592 ETRSKLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQKEEAQR 651
Query: 156 KEFEREKQ 163
+ ER+KQ
Sbjct: 652 RAQERDKQ 659
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 38.5 bits (88), Expect = 0.003
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 29 LSDTSPD----EGLIEDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDT 84
L DT P E + E L ++ + L L + Q+ + L+ +Q +
Sbjct: 1279 LKDTKPQVQTKEVVQEILQFQEDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIAR 1338
Query: 85 LEQEISKFKECHSMLDI------NALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALK 138
E+E+S+ KE ++ L AEA + + +++ L + +L++R +
Sbjct: 1339 KEEELSRVKERVVQQEVVRYEEEPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRRTE 1398
Query: 139 LQQKRQKEELEREQQREKEFEREKQ 163
L+ RQ EELERE+Q +E ERE Q
Sbjct: 1399 LE--RQLEELERERQARREAEREVQ 1421
Score = 30.4 bits (67), Expect = 0.79
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 62 PDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKE 121
P L+ Q LQE Q Q L + E+E+S ++ L+ AE K +++ + K+
Sbjct: 1064 PQLEAEYQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITVKEVLKVEKD 1123
Query: 122 MLM---LHEKTSKLKKRALKLQ-QKRQKEELER-----EQQREKEFEREK 162
+ + T + + A K + +R+K EL R E++ K +EK
Sbjct: 1124 AATEREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEK 1173
Score = 28.9 bits (63), Expect = 2.3
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 29 LSDTSPDEGLIEDLTIEDKAVEQLAEGL--LSHYLPDLQRSKQALQELTQNQVVLLDTLE 86
L + P E ++ ++ L E L L + Q Q LQE + + L LE
Sbjct: 923 LRNQGPQESVVRKEVLKKVPDPVLEESFQQLQRTLAEEQHKNQLLQEELEALQLQLRALE 982
Query: 87 QEISKFKECHSMLDINALFAEAKHYHA-KLVNIRKEMLMLHEKTSKLKKRALKLQQKRQK 145
QE + + + ++ L E A +++ +R+E+ L + + L LQQ+
Sbjct: 983 QETRDGGQEYVVKEV--LRIEPDRAQADEVLQLREELEALRRQKGAREAEVLLLQQRVAA 1040
Query: 146 EELEREQQREKEFERE 161
E+ + +EK E+E
Sbjct: 1041 LAEEKSRAQEKVTEKE 1056
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 38.1 bits (87), Expect = 0.004
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 30 SDTSPDEGLI--EDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQ 87
S PDEG E +T + +G L+ + L++ K L+E+T+ + +E+
Sbjct: 111 SPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKK--LEEMTRTEQEDSSCMEK 168
Query: 88 EISK-FKECHSMLDINALFAEAKHYH--------------AKLVNIRKEMLMLHEKTSKL 132
+SK +KE L+ + L E K +L+++R+++L H++ KL
Sbjct: 169 LLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKL 228
Query: 133 KKRALKLQQKRQKEELEREQQREKEFEREKQL 164
A +++++RQ+ +L R+QQ + ++++ L
Sbjct: 229 A--ASQIEKQRQQMDLARQQQEQIARQQQQLL 258
>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
sapiens]
Length = 801
Score = 38.1 bits (87), Expect = 0.004
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 30 SDTSPDEGLI--EDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQ 87
S PDEG E +T + +G L+ + L++ K L+E+T+ + +E+
Sbjct: 98 SPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKK--LEEMTRTEQEDSSCMEK 155
Query: 88 EISK-FKECHSMLDINALFAEAKHYH--------------AKLVNIRKEMLMLHEKTSKL 132
+SK +KE L+ + L E K +L+++R+++L H++ KL
Sbjct: 156 LLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKL 215
Query: 133 KKRALKLQQKRQKEELEREQQREKEFEREKQL 164
A +++++RQ+ +L R+QQ + ++++ L
Sbjct: 216 A--ASQIEKQRQQMDLARQQQEQIARQQQQLL 245
>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
sapiens]
Length = 804
Score = 38.1 bits (87), Expect = 0.004
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 30 SDTSPDEGLI--EDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQ 87
S PDEG E +T + +G L+ + L++ K L+E+T+ + +E+
Sbjct: 101 SPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKK--LEEMTRTEQEDSSCMEK 158
Query: 88 EISK-FKECHSMLDINALFAEAKHYH--------------AKLVNIRKEMLMLHEKTSKL 132
+SK +KE L+ + L E K +L+++R+++L H++ KL
Sbjct: 159 LLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKL 218
Query: 133 KKRALKLQQKRQKEELEREQQREKEFEREKQL 164
A +++++RQ+ +L R+QQ + ++++ L
Sbjct: 219 A--ASQIEKQRQQMDLARQQQEQIARQQQQLL 248
>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
sapiens]
Length = 808
Score = 38.1 bits (87), Expect = 0.004
Identities = 37/152 (24%), Positives = 76/152 (50%), Gaps = 21/152 (13%)
Query: 30 SDTSPDEGLI--EDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQ 87
S PDEG E +T + +G L+ + L++ K L+E+T+ + +E+
Sbjct: 98 SPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKK--LEEMTRTEQEDSSCMEK 155
Query: 88 EISK-FKECHSMLDINALFAEAKHYH--------------AKLVNIRKEMLMLHEKTSKL 132
+SK +KE L+ + L E K +L+++R+++L H++ KL
Sbjct: 156 LLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKL 215
Query: 133 KKRALKLQQKRQKEELEREQQREKEFEREKQL 164
A +++++RQ+ +L R+QQ + ++++ L
Sbjct: 216 A--ASQIEKQRQQMDLARQQQEQIARQQQQLL 245
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 37.4 bits (85), Expect = 0.006
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 45 EDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINAL 104
+DK +E A+ H Q ++QE+ + L +TL Q +K K S ++
Sbjct: 1452 QDKVMETSAQSSGDH-----QEQHVSVQEMQE----LKETLNQAETKSKSLESQVENLQK 1502
Query: 105 FAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQL 164
K A+ N++++ + L + S+L++ LQ + +EE R+Q EKE + K +
Sbjct: 1503 TLSEKETEAR--NLQEQTVQLQSELSRLRQ---DLQDRTTQEEQLRQQITEKEEKTRKAI 1557
Query: 165 TARPAK 170
A +K
Sbjct: 1558 VAAKSK 1563
Score = 32.3 bits (72), Expect = 0.21
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 44 IEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINA 103
IE KA + + + +Y + ++A E QN+ L+ L+++++ + ++ +
Sbjct: 666 IEAKAALKQLQEIFENY-----KKEKAENEKIQNEQ--LEKLQEQVTDLRSQNTKISTQL 718
Query: 104 LFAEAKHYHAKLVNI---RKEMLMLHEKTSKLKKRALKLQQ---------KRQKEELERE 151
FA +K Y N+ R+E+ LHE+ KL K +Q + E+L
Sbjct: 719 DFA-SKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVA 777
Query: 152 QQREKEFEREKQL 164
+ R + ++EK++
Sbjct: 778 EVRAENLKKEKEM 790
Score = 32.3 bits (72), Expect = 0.21
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 65 QRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLD--------INALFAEAKHYHAKLV 116
+R K +EL Q +++T Q +E H + +N ++K +++
Sbjct: 1439 RRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKETLNQAETKSKSLESQVE 1498
Query: 117 NIRK-------EMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQ 163
N++K E L E+T +L+ +L+Q Q + EQ R++ E+E++
Sbjct: 1499 NLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEK 1552
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 37.4 bits (85), Expect = 0.006
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 22/151 (14%)
Query: 38 LIEDLTIEDKAVEQLAEGLLSHYLPDLQRSKQALQELTQNQVVL---LDTLEQEISKFKE 94
+I LT E KA+++ + L DLQ + + L++++V L +D LE + + K+
Sbjct: 990 IIAKLTKEKKALQEAHQQALD----DLQVEEDKVNSLSKSKVKLEQQVDDLEGSLEQEKK 1045
Query: 95 CHSMLDI--NALFAEAKHYHAKLVNIRKEMLMLHEKTSKLK------------KRALKLQ 140
L+ L + K ++++ + L L EK K + ++ L LQ
Sbjct: 1046 VRMDLERAKRKLEGDLKLTQESIMDLENDKLQLEEKLKKKEFDINQQNSKIEDEQVLALQ 1105
Query: 141 -QKRQKEELEREQQREKEFEREKQLTARPAK 170
QK+ KE R ++ E+E E E+ A+ K
Sbjct: 1106 LQKKLKENQARIEELEEELEAERTARAKVEK 1136
Score = 30.8 bits (68), Expect = 0.60
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 85 LEQEISKFKECHSMLDINALFAEAKHYHA---KLVNIRKEMLMLHEKTSKLKKRALKLQQ 141
LE E S+ K+ L++ E K HA K+ N+ +EM L E +KL K LQ+
Sbjct: 945 LEDECSELKKDIDDLELTLAKVE-KEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQE 1003
Query: 142 KRQK--EELEREQQREKEFEREK 162
Q+ ++L+ E+ + + K
Sbjct: 1004 AHQQALDDLQVEEDKVNSLSKSK 1026
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 37.0 bits (84), Expect = 0.008
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 85 LEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSK----LKKRALKLQ 140
L+QE+ K+ L LFAE + H L + L H K + K++ L
Sbjct: 77 LQQELLALKQ-QQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEMLA 135
Query: 141 QKRQKE---ELEREQQREKEFEREK 162
KRQ+E + +REQQR++E E+++
Sbjct: 136 AKRQQELEQQRQREQQRQEELEKQR 160
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 37.0 bits (84), Expect = 0.008
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 85 LEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSK----LKKRALKLQ 140
L+QE+ K+ L LFAE + H L + L H K + K++ L
Sbjct: 76 LQQELLALKQ-QQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKQQQEMLA 134
Query: 141 QKRQKE---ELEREQQREKEFEREK 162
KRQ+E + +REQQR++E E+++
Sbjct: 135 AKRQQELEQQRQREQQRQEELEKQR 159
>gi|156119615 myosin IXA [Homo sapiens]
Length = 2548
Score = 37.0 bits (84), Expect = 0.008
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Query: 4 PGPSSPDGALTRPPYCLEAGEPTPGLSDTSPDEGLIEDLTIEDKAVEQLAEGLLSHYLPD 63
PGPSSP + R P + E T + + + D+T + +A Q E +L+ + +
Sbjct: 2290 PGPSSP--VVVRLPSVSDVSEET-----LTSEAAMETDITEQQQAAMQQEERVLTEQIEN 2342
Query: 64 LQRSKQALQELTQNQVVLL------DTLEQEIS-KFKECHSMLDINALFAEAKHYHAKLV 116
LQ+ K +ELT +VL +TLE E S + L++ + +A ++ L
Sbjct: 2343 LQKEK---EELTFEMLVLEPRASDDETLESEASIGTADSSENLNMESEYAISEKSERSLA 2399
Query: 117 NIRKEMLMLHEKTSKLKKRALKLQQKRQKEELE 149
+ E +SKL+K Q K+Q++ L+
Sbjct: 2400 LSSLKTAGKSEPSSKLRK-----QLKKQQDSLD 2427
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 37.0 bits (84), Expect = 0.008
Identities = 32/141 (22%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 38 LIEDLTIEDKA-VEQLAEGLLSHYLP-------DLQRSKQALQELTQNQVVLLDTLEQEI 89
L EDL IE + +E+L + L HY ++ + + +Q N + + L EI
Sbjct: 640 LKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEI 699
Query: 90 SKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQKRQKEELE 149
SK K+ L + ++++ ++ ++KE+ +L ++ + ++Q+ + K EL
Sbjct: 700 SKLKDLQQSL----VNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELL 755
Query: 150 REQQREKEFEREKQLTARPAK 170
+Q +EKE + +++ A+
Sbjct: 756 EKQMKEKENDLQEKFAQLEAE 776
Score = 32.0 bits (71), Expect = 0.27
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 53 AEGLLSHYLPDLQRSKQALQEL-TQNQVVLLDTLE--QEISKFKECHSML-----DINAL 104
+E LL L+ + EL + + LD+L+ Q++ K ++ H + N
Sbjct: 3341 SEDLLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTE 3400
Query: 105 FAEAKH-YHAKLVNIRKEMLMLHEKTSKLKKRALKLQ---QKRQKEELEREQQRE 155
+ H +K+ ++++++ ++ KL +LQ Q+ QK+ELERE++RE
Sbjct: 3401 GQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQELEREEKRE 3455
Score = 27.7 bits (60), Expect = 5.1
Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 114 KLVNIRKEMLML---HEKTSKLKKRALKLQQKRQKEELEREQQREKEFERE 161
+L ++R+E++ H++ ++L ++A Q +RQ+E+ E+ Q+ K R+
Sbjct: 1586 QLEDMRQELVRQYQEHQQATELLRQAHMRQMERQREDQEQLQEEIKRLNRQ 1636
Score = 26.9 bits (58), Expect = 8.7
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 83 DTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEM---LMLHEKTSKLKKRALKL 139
D L++ + +E HS I L E + Y + R++M +H KT + ++ A
Sbjct: 3343 DLLKELQKQLEEKHSR--IVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTE 3400
Query: 140 QQKRQKEELEREQQREKEFEREKQ 163
QK+ E + + +++ E ++Q
Sbjct: 3401 GQKKMHELQSKVEDLQRQLEEKRQ 3424
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 37.0 bits (84), Expect = 0.008
Identities = 32/141 (22%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 38 LIEDLTIEDKA-VEQLAEGLLSHYLP-------DLQRSKQALQELTQNQVVLLDTLEQEI 89
L EDL IE + +E+L + L HY ++ + + +Q N + + L EI
Sbjct: 640 LKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEI 699
Query: 90 SKFKECHSMLDINALFAEAKHYHAKLVNIRKEMLMLHEKTSKLKKRALKLQQKRQKEELE 149
SK K+ L + ++++ ++ ++KE+ +L ++ + ++Q+ + K EL
Sbjct: 700 SKLKDLQQSL----VNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELL 755
Query: 150 REQQREKEFEREKQLTARPAK 170
+Q +EKE + +++ A+
Sbjct: 756 EKQMKEKENDLQEKFAQLEAE 776
Score = 32.0 bits (71), Expect = 0.27
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 53 AEGLLSHYLPDLQRSKQALQEL-TQNQVVLLDTLE--QEISKFKECHSML-----DINAL 104
+E LL L+ + EL + + LD+L+ Q++ K ++ H + N
Sbjct: 3333 SEDLLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTE 3392
Query: 105 FAEAKH-YHAKLVNIRKEMLMLHEKTSKLKKRALKLQ---QKRQKEELEREQQRE 155
+ H +K+ ++++++ ++ KL +LQ Q+ QK+ELERE++RE
Sbjct: 3393 GQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQELEREEKRE 3447
Score = 27.7 bits (60), Expect = 5.1
Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 114 KLVNIRKEMLML---HEKTSKLKKRALKLQQKRQKEELEREQQREKEFERE 161
+L ++R+E++ H++ ++L ++A Q +RQ+E+ E+ Q+ K R+
Sbjct: 1586 QLEDMRQELVRQYQEHQQATELLRQAHMRQMERQREDQEQLQEEIKRLNRQ 1636
Score = 26.9 bits (58), Expect = 8.7
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 83 DTLEQEISKFKECHSMLDINALFAEAKHYHAKLVNIRKEM---LMLHEKTSKLKKRALKL 139
D L++ + +E HS I L E + Y + R++M +H KT + ++ A
Sbjct: 3335 DLLKELQKQLEEKHSR--IVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTE 3392
Query: 140 QQKRQKEELEREQQREKEFEREKQ 163
QK+ E + + +++ E ++Q
Sbjct: 3393 GQKKMHELQSKVEDLQRQLEEKRQ 3416
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 37.0 bits (84), Expect = 0.008
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 127 EKTSKLKKRALKLQQKRQKEELEREQQREK-EFEREKQ 163
++T K +K K +++RQK+E ERE++R+K E EREKQ
Sbjct: 719 KETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQ 756
Score = 32.7 bits (73), Expect = 0.16
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 120 KEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREK-EFEREKQ 163
KE ++ K +K K +++R+KE ++E++REK E EREKQ
Sbjct: 719 KETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQ 763
Score = 31.6 bits (70), Expect = 0.35
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 120 KEMLMLHEKTSKLKKRALKLQQKRQKEELEREQQREK-EFEREKQ 163
KE ++ K +K K +QK++KE ++E++REK E ER+KQ
Sbjct: 726 KERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQKQ 770
Score = 28.9 bits (63), Expect = 2.3
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 133 KKRALKLQQKRQKEELEREQQREKEFEREKQLTAR 167
+K K +++R+K+E ERE+Q ++ ++EK+ R
Sbjct: 743 EKERQKQEKEREKQEKEREKQEKERQKQEKKAQGR 777
>gi|33188449 serine/arginine-rich protein-specific kinase 2 isoform
a [Homo sapiens]
Length = 699
Score = 36.6 bits (83), Expect = 0.011
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 128 KTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQ 163
K SK KK+ LK +QKRQ E LE+ Q +E ERE +
Sbjct: 274 KISKNKKKKLKKKQKRQAELLEKRLQEIEELEREAE 309
Score = 26.9 bits (58), Expect = 8.7
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 127 EKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPA 169
+K K +KR +L +KR +E E E++ E++ E +A P+
Sbjct: 281 KKLKKKQKRQAELLEKRLQEIEELEREAERKIIEENITSAAPS 323
>gi|33188447 serine/arginine-rich protein-specific kinase 2 isoform
b [Homo sapiens]
Length = 688
Score = 36.6 bits (83), Expect = 0.011
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 128 KTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQ 163
K SK KK+ LK +QKRQ E LE+ Q +E ERE +
Sbjct: 263 KISKNKKKKLKKKQKRQAELLEKRLQEIEELEREAE 298
Score = 26.9 bits (58), Expect = 8.7
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 127 EKTSKLKKRALKLQQKRQKEELEREQQREKEFEREKQLTARPA 169
+K K +KR +L +KR +E E E++ E++ E +A P+
Sbjct: 270 KKLKKKQKRQAELLEKRLQEIEELEREAERKIIEENITSAAPS 312
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,142,127
Number of Sequences: 37866
Number of extensions: 349965
Number of successful extensions: 7683
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 435
Number of HSP's that attempted gapping in prelim test: 3917
Number of HSP's gapped (non-prelim): 3238
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.