Search of human proteins with 6857800

Search of human proteins with 6857800

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6857800 interferon stimulated exonuclease [Homo sapiens]
         (181 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6857800 interferon stimulated exonuclease [Homo sapiens]           360   e-100
gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1...   158   2e-39
gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2 ...   152   2e-37
gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo s...   114   3e-26
gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ...    74   7e-14
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ...    74   7e-14
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ...    74   7e-14
gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo ...    74   7e-14
gi|239743594 PREDICTED: hypothetical protein XP_002342913, parti...    74   7e-14
gi|126273519 exonuclease GOR [Homo sapiens]                            74   9e-14
gi|145199237 transcription elongation factor B polypeptide 3 bin...    72   3e-13
gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]               68   4e-12
gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]               68   4e-12
gi|188536114 PAN2 polyA specific ribonuclease subunit homolog is...    44   1e-04
gi|188536112 PAN2 polyA specific ribonuclease subunit homolog is...    44   1e-04
gi|4507877 vinculin isoform VCL [Homo sapiens]                         28   3.3  
gi|7669550 vinculin isoform meta-VCL [Homo sapiens]                    28   3.3  
gi|17986001 major histocompatibility complex, class I, B precurs...    27   7.3  
gi|4503825 frizzled 1 [Homo sapiens]                                   27   7.3  
gi|239755627 PREDICTED: similar to cag [Homo sapiens]                  27   7.3  
gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo ...    27   7.3  
gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo ...    27   7.3  
gi|169205008 PREDICTED: hypothetical protein [Homo sapiens]            27   9.6  
gi|169205607 PREDICTED: hypothetical protein [Homo sapiens]            27   9.6  
gi|169204476 PREDICTED: hypothetical protein [Homo sapiens]            27   9.6  
gi|4503827 frizzled 2 [Homo sapiens]                                   27   9.6  
gi|194272142 myosin IXB isoform 2 [Homo sapiens]                       27   9.6  
gi|33356170 myosin IXB isoform 1 [Homo sapiens]                        27   9.6  
gi|209862855 vaccinia related kinase 2 isoform 6 [Homo sapiens]        27   9.6  
gi|194440713 vaccinia related kinase 2 isoform 3 [Homo sapiens]        27   9.6  

>gi|6857800 interferon stimulated exonuclease [Homo sapiens]
          Length = 181

 Score =  360 bits (923), Expect = e-100
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVT 60
           MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVT
Sbjct: 1   MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVT 60

Query: 61  PQHMVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREA 120
           PQHMVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREA
Sbjct: 61  PQHMVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREA 120

Query: 121 KLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRLAVS 180
           KLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRLAVS
Sbjct: 121 KLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRLAVS 180

Query: 181 D 181
           D
Sbjct: 181 D 181


>gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1
           [Homo sapiens]
          Length = 325

 Score =  158 bits (400), Expect = 2e-39
 Identities = 92/158 (58%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 8   VAMDCEMVGLGPH-RESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66
           VA+DCEMVG GP  R S LARCS+V+ HG VLYDK+IRPE  I DYRTR SG+T QHM  
Sbjct: 111 VAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWSGITRQHMRK 170

Query: 67  ATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCR 126
           A PF VA+ EIL+LLKGK+VVGH L +DFQALK         DT+       E  L    
Sbjct: 171 AVPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFLSEPGLHTRA 230

Query: 127 RVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQI 164
           RVSL+ L+ +LLHK IQ    GHSSVEDA   MELY++
Sbjct: 231 RVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRL 268


>gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2
           [Homo sapiens]
          Length = 353

 Score =  152 bits (383), Expect = 2e-37
 Identities = 84/161 (52%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 5   REVVAMDCEMVGLGPHRE-SGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQH 63
           R++VA+DCEMVG GP    S LARCS+VN +G VLYD++I P   I DYRTR SG+  QH
Sbjct: 177 RKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQH 236

Query: 64  MVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
           MV ATPF +AR +IL++L GK+VVGH + +DF+AL+         DTS    L R+A   
Sbjct: 237 MVNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADCP 296

Query: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQI 164
               +SL+ L+++LL++ IQ    GHSSVEDA+ATMELY++
Sbjct: 297 ENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKL 337


>gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo
           sapiens]
          Length = 422

 Score =  114 bits (286), Expect = 3e-26
 Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 6/161 (3%)

Query: 3   GSREVVAMDCEMVGLGPHRESGLA-RCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTP 61
           G    +A+DCEMVG+GP  E  +A R S+VN +G  +YDK+++P   +TDYRT VSG+ P
Sbjct: 239 GLTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRP 298

Query: 62  QHMVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAK 121
           +++       V + E+ ++LKG+++VGH L +D + L  D     I DT   +    + K
Sbjct: 299 ENLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVK 358

Query: 122 LDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELY 162
                R SLR+LSE++L   +Q +   H S++DA+A M LY
Sbjct: 359 ---SGRPSLRLLSEKILGLQVQQA--EHCSIQDAQAAMRLY 394


>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
           sapiens]
          Length = 675

 Score = 73.9 bits (180), Expect = 7e-14
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 7   VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66
           + A+DCEM       E  L R ++V+    V+YD F++P+ EI DY TR SGVT +  V 
Sbjct: 501 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVT-EADVA 557

Query: 67  ATPFAVARLEILQL---LKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
            T   + +++ + L       +++GH L+ D  ALK       I+ T  D  +     L 
Sbjct: 558 KTSITLPQVQAILLSFFSAQTILIGHSLESDLLALK------LIHSTVVDTAVLFPHYLG 611

Query: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171
              + SLR L+   L + IQ+S  GH+S EDA A ++L     R RA+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQ 659


>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
           sapiens]
          Length = 675

 Score = 73.9 bits (180), Expect = 7e-14
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 7   VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66
           + A+DCEM       E  L R ++V+    V+YD F++P+ EI DY TR SGVT +  V 
Sbjct: 501 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVT-EADVA 557

Query: 67  ATPFAVARLEILQL---LKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
            T   + +++ + L       +++GH L+ D  ALK       I+ T  D  +     L 
Sbjct: 558 KTSITLPQVQAILLSFFSAQTILIGHSLESDLLALK------LIHSTVVDTAVLFPHYLG 611

Query: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171
              + SLR L+   L + IQ+S  GH+S EDA A ++L     R RA+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQ 659


>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
           sapiens]
          Length = 675

 Score = 73.9 bits (180), Expect = 7e-14
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 7   VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66
           + A+DCEM       E  L R ++V+    V+YD F++P+ EI DY TR SGVT +  V 
Sbjct: 501 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVT-EADVA 557

Query: 67  ATPFAVARLEILQL---LKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
            T   + +++ + L       +++GH L+ D  ALK       I+ T  D  +     L 
Sbjct: 558 KTSITLPQVQAILLSFFSAQTILIGHSLESDLLALK------LIHSTVVDTAVLFPHYLG 611

Query: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171
              + SLR L+   L + IQ+S  GH+S EDA A ++L     R RA+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQ 659


>gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo
           sapiens]
          Length = 675

 Score = 73.9 bits (180), Expect = 7e-14
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 7   VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66
           + A+DCEM       E  L R ++V+    V+YD F++P+ EI DY TR SGVT +  V 
Sbjct: 501 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVT-EADVA 557

Query: 67  ATPFAVARLEILQL---LKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
            T   + +++ + L       +++GH L+ D  ALK       I+ T  D  +     L 
Sbjct: 558 KTSITLPQVQAILLSFFSAQTILIGHSLESDLLALK------LIHSTVVDTAVLFPHYLG 611

Query: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171
              + SLR L+   L + IQ+S  GH+S EDA A ++L     R RA+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQ 659


>gi|239743594 PREDICTED: hypothetical protein XP_002342913, partial
           [Homo sapiens]
          Length = 552

 Score = 73.9 bits (180), Expect = 7e-14
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 7   VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66
           + A+DCEM       E  L R ++V+    V+YD F++P+ EI DY TR SGVT +  V 
Sbjct: 378 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVT-EADVA 434

Query: 67  ATPFAVARLEILQL---LKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
            T   + +++ + L       +++GH L+ D  ALK       I+ T  D  +     L 
Sbjct: 435 KTSITLPQVQAILLSFFSAQTILIGHSLESDLLALK------LIHSTVVDTAVLFPHYLG 488

Query: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171
              + SLR L+   L + IQ+S  GH+S EDA A ++L     R RA+
Sbjct: 489 FPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQRAQ 536


>gi|126273519 exonuclease GOR [Homo sapiens]
          Length = 675

 Score = 73.6 bits (179), Expect = 9e-14
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 12/168 (7%)

Query: 7   VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 66
           + A+DCEM       E  L R ++V+    V+YD F++P+ EI DY TR SGVT +  V 
Sbjct: 501 IYALDCEMCYTTHGLE--LTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVT-EADVA 557

Query: 67  ATPFAVARLEILQL---LKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
            T   + +++ + L       +++GH L+ D  ALK       I+ T  D  +     L 
Sbjct: 558 KTSITLPQVQAILLSFFSAQTILIGHSLESDLLALK------LIHSTVVDTAVLFPHYLG 611

Query: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171
              + SLR L+   L + IQ+S  GH+S EDA A ++L     R RA+
Sbjct: 612 FPYKRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQRAQ 659


>gi|145199237 transcription elongation factor B polypeptide 3 binding
            protein 1 [Homo sapiens]
          Length = 1221

 Score = 71.6 bits (174), Expect = 3e-13
 Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 10/157 (6%)

Query: 7    VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM-- 64
            + A+DCEM       E  L R ++V+    V+YD F++P+ EI DY TR SGVT   +  
Sbjct: 1060 IYALDCEMSYTTYGLE--LTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEADLAD 1117

Query: 65   VGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDH 124
               T   V  + +       +++GH L+ D  ALK       I+ T  D  +    +L  
Sbjct: 1118 TSVTLRDVQAVLLSMFSADTILIGHSLESDLLALK------VIHSTVVDTSVLFPHRLGL 1171

Query: 125  CRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMEL 161
              + SLR L    L + IQ+++ GHSS EDA A M L
Sbjct: 1172 PYKRSLRNLMADYLRQIIQDNVDGHSSSEDAGACMHL 1208


>gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]
          Length = 743

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 19/167 (11%)

Query: 1   MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVT 60
           +A +  +  +DCEM      RE  L R SLV   G  + D+ ++PE +I DY T  SG+T
Sbjct: 222 IADNSPLFGLDCEMCLTSKGRE--LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGIT 279

Query: 61  PQHMVGATPFAVARLEILQLLKGKL-----VVGHDLKHDFQALKEDMSGYTIYDTSTDRL 115
            + +    P      ++ + LK  L     +VGH L  D +ALK  M    + DTS   L
Sbjct: 280 KKIL---NPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALK--MIHPYVIDTS---L 331

Query: 116 LWREAKLDHCRRVSLRVLSERLLHKSIQ-NSLLGHSSVEDARATMEL 161
           L+     +  RR  L+ L++ +L K IQ    LGH + EDAR  +EL
Sbjct: 332 LYVR---EQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILEL 375


>gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]
          Length = 774

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 19/167 (11%)

Query: 1   MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVT 60
           +A +  +  +DCEM      RE  L R SLV   G  + D+ ++PE +I DY T  SG+T
Sbjct: 222 IADNSPLFGLDCEMCLTSKGRE--LTRISLVAEGGCCVMDELVKPENKILDYLTSFSGIT 279

Query: 61  PQHMVGATPFAVARLEILQLLKGKL-----VVGHDLKHDFQALKEDMSGYTIYDTSTDRL 115
            + +    P      ++ + LK  L     +VGH L  D +ALK  M    + DTS   L
Sbjct: 280 KKIL---NPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALK--MIHPYVIDTS---L 331

Query: 116 LWREAKLDHCRRVSLRVLSERLLHKSIQ-NSLLGHSSVEDARATMEL 161
           L+     +  RR  L+ L++ +L K IQ    LGH + EDAR  +EL
Sbjct: 332 LYVR---EQGRRFKLKFLAKVILGKDIQCPDRLGHDATEDARTILEL 375


>gi|188536114 PAN2 polyA specific ribonuclease subunit homolog isoform
            2 [Homo sapiens]
          Length = 1202

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 15/136 (11%)

Query: 35   GAVLYDKFIRPEGEITDYRTRVSGVTPQHM---VGATPFAVARLEILQLL----KGKLVV 87
            G    D +I  + ++ DY T+ SG+ P  +   + +      +   L+L      G   V
Sbjct: 1021 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1080

Query: 88   GHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLL 147
            GH L+ DF+ +   +    + DT     + R+      R +SLR L+   L   IQ    
Sbjct: 1081 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRK------RMISLRFLAWYFLDLKIQGET- 1133

Query: 148  GHSSVEDARATMELYQ 163
             H S+EDAR  ++LY+
Sbjct: 1134 -HDSIEDARTALQLYR 1148


>gi|188536112 PAN2 polyA specific ribonuclease subunit homolog isoform
            1 [Homo sapiens]
          Length = 1198

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 15/136 (11%)

Query: 35   GAVLYDKFIRPEGEITDYRTRVSGVTPQHM---VGATPFAVARLEILQLL----KGKLVV 87
            G    D +I  + ++ DY T+ SG+ P  +   + +      +   L+L      G   V
Sbjct: 1017 GIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFV 1076

Query: 88   GHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLL 147
            GH L+ DF+ +   +    + DT     + R+      R +SLR L+   L   IQ    
Sbjct: 1077 GHGLQKDFRVINLMVPKDQVLDTVYLFHMPRK------RMISLRFLAWYFLDLKIQGET- 1129

Query: 148  GHSSVEDARATMELYQ 163
             H S+EDAR  ++LY+
Sbjct: 1130 -HDSIEDARTALQLYR 1144


>gi|4507877 vinculin isoform VCL [Homo sapiens]
          Length = 1066

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 15  VGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVS 57
           V +GP+R+  LA+C  V+   A L D   R EGE    R   S
Sbjct: 532 VMMGPYRQDLLAKCDRVDQLTAQLADLAARGEGESPQARALAS 574


>gi|7669550 vinculin isoform meta-VCL [Homo sapiens]
          Length = 1134

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 15  VGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVS 57
           V +GP+R+  LA+C  V+   A L D   R EGE    R   S
Sbjct: 532 VMMGPYRQDLLAKCDRVDQLTAQLADLAARGEGESPQARALAS 574


>gi|17986001 major histocompatibility complex, class I, B precursor
           [Homo sapiens]
          Length = 362

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 83  GKLVVGHDLK----HDFQALKEDMSGYTIYDTSTD--RLLWREAKLDHCRRVSLRVLSER 136
           G+L+ GHD       D+ AL ED+  +T  DT+    +  W  A+    RR  L      
Sbjct: 131 GRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVE 190

Query: 137 LLHKSIQN 144
            L + ++N
Sbjct: 191 WLRRYLEN 198


>gi|4503825 frizzled 1 [Homo sapiens]
          Length = 647

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171
           +C+ +S+ + ++   +++I  +LLGH++ ED  A +E++Q    ++ +
Sbjct: 115 YCQPISIPLCTDIAYNQTIMPNLLGHTNQED--AGLEVHQFYPLVKVQ 160


>gi|239755627 PREDICTED: similar to cag [Homo sapiens]
          Length = 392

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 10/74 (13%)

Query: 92  KHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHK----SIQNSLL 147
           +H F   +E MS Y I     +RLL ++A L   R+++L+   ++ + +    S+Q+ LL
Sbjct: 324 QHAFITEQEIMSVYKI----KERLLRQKASL--MRQMTLKETFKKAIQRNASSSLQDPLL 377

Query: 148 GHSSVEDARATMEL 161
           G S+  DA + +++
Sbjct: 378 GPSTASDASSHLKI 391


>gi|239750125 PREDICTED: hypothetical protein XP_002347296 [Homo
           sapiens]
          Length = 392

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 10/74 (13%)

Query: 92  KHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHK----SIQNSLL 147
           +H F   +E MS Y I     +RLL ++A L   R+++L+   ++ + +    S+Q+ LL
Sbjct: 324 QHAFITEQEIMSVYKI----KERLLRQKASL--MRQMTLKETFKKAIQRNASSSLQDPLL 377

Query: 148 GHSSVEDARATMEL 161
           G S+  DA + +++
Sbjct: 378 GPSTASDASSHLKI 391


>gi|239744433 PREDICTED: hypothetical protein XP_002343159 [Homo
           sapiens]
          Length = 392

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 10/74 (13%)

Query: 92  KHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHK----SIQNSLL 147
           +H F   +E MS Y I     +RLL ++A L   R+++L+   ++ + +    S+Q+ LL
Sbjct: 324 QHAFITEQEIMSVYKI----KERLLRQKASL--MRQMTLKETFKKAIQRNASSSLQDPLL 377

Query: 148 GHSSVEDARATMEL 161
           G S+  DA + +++
Sbjct: 378 GPSTASDASSHLKI 391


>gi|169205008 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 234

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 83  GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAK-LDHCRRVSLRVLSE 135
           G    G     + + L   +SG ++ DT+TD   W EA  L   RRV+ + L E
Sbjct: 170 GAEAAGEGEAREGRGLAVSVSGTSVSDTATDTRPWAEADLLREWRRVAKQHLKE 223


>gi|169205607 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 234

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 83  GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAK-LDHCRRVSLRVLSE 135
           G    G     + + L   +SG ++ DT+TD   W EA  L   RRV+ + L E
Sbjct: 170 GAEAAGEGEAREGRGLAVSVSGTSVSDTATDTRPWAEADLLREWRRVAKQHLKE 223


>gi|169204476 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 234

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 83  GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAK-LDHCRRVSLRVLSE 135
           G    G     + + L   +SG ++ DT+TD   W EA  L   RRV+ + L E
Sbjct: 170 GAEAAGEGEAREGRGLAVSVSGTSVSDTATDTRPWAEADLLREWRRVAKQHLKE 223


>gi|4503827 frizzled 2 [Homo sapiens]
          Length = 565

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 123 DH--CRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRAR 171
           DH  C+ +S+ + ++   +++I  +LLGH++ ED  A +E++Q    ++ +
Sbjct: 35  DHGFCQPISIPLCTDIAYNQTIMPNLLGHTNQED--AGLEVHQFYPLVKVQ 83


>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
          Length = 2022

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 84  KLVVGHDLKHDFQALKEDM 102
           K+  G DLKHDF+ LK+ M
Sbjct: 370 KIEDGEDLKHDFERLKQAM 388


>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
          Length = 2157

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 84  KLVVGHDLKHDFQALKEDM 102
           K+  G DLKHDF+ LK+ M
Sbjct: 370 KIEDGEDLKHDFERLKQAM 388


>gi|209862855 vaccinia related kinase 2 isoform 6 [Homo sapiens]
          Length = 390

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 13  EMVGLGPHRESGLARCSLVNVHGAVL---------YDKFIRPEGEITDYRTRVSGVTPQH 63
           E   L  H+   L+R S V + G  +         +++ ++    +   +T +    PQ 
Sbjct: 97  EFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQS 156

Query: 64  MVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTI 107
           ++   P   +  EI Q L     + +D K ++QALK+ ++ + I
Sbjct: 157 VLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 200


>gi|194440713 vaccinia related kinase 2 isoform 3 [Homo sapiens]
          Length = 396

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 13  EMVGLGPHRESGLARCSLVNVHGAVL---------YDKFIRPEGEITDYRTRVSGVTPQH 63
           E   L  H+   L+R S V + G  +         +++ ++    +   +T +    PQ 
Sbjct: 215 EFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQS 274

Query: 64  MVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTI 107
           ++   P   +  EI Q L     + +D K ++QALK+ ++ + I
Sbjct: 275 VLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 318


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,117,894
Number of Sequences: 37866
Number of extensions: 229777
Number of successful extensions: 572
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 35
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.