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Search of human proteins with 68226422
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68226422 Yip1 domain family, member 5 [Homo sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68226422 Yip1 domain family, member 5 [Homo sapiens] 527 e-150
gi|32401427 Yip1 domain family, member 5 [Homo sapiens] 527 e-150
gi|148664222 Yip1 domain family, member 7 [Homo sapiens] 315 2e-86
gi|14150076 Yip1 domain family, member 4 [Homo sapiens] 64 1e-10
gi|28603852 Yip1 domain family, member 6 [Homo sapiens] 42 4e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 35 0.064
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 35 0.064
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 33 0.32
gi|239746699 PREDICTED: hypothetical protein XP_002343813 [Homo ... 32 0.54
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 31 0.93
gi|239757686 PREDICTED: hypothetical protein [Homo sapiens] 31 0.93
gi|239752176 PREDICTED: hypothetical protein [Homo sapiens] 31 0.93
gi|21361320 TRK-fused [Homo sapiens] 31 0.93
gi|56090139 TRK-fused [Homo sapiens] 31 0.93
gi|189491628 enamelin [Homo sapiens] 30 1.6
gi|238908505 DNA-directed RNA polymerase III B isoform 2 [Homo s... 30 2.1
gi|238908503 DNA-directed RNA polymerase III B isoform 1 [Homo s... 30 2.1
gi|39777614 SS18-like protein 1 [Homo sapiens] 30 2.1
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 30 2.7
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 30 2.7
gi|156415988 zinc finger and BTB domain containing 7B [Homo sapi... 29 3.5
gi|239752951 PREDICTED: similar to kruppel-related zinc finger p... 29 3.5
gi|239752949 PREDICTED: similar to kruppel-related zinc finger p... 29 3.5
gi|239752947 PREDICTED: similar to kruppel-related zinc finger p... 29 3.5
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 29 3.5
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 29 3.5
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s... 29 3.5
gi|153792230 hypothetical protein LOC57670 [Homo sapiens] 29 4.6
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 29 4.6
gi|116805330 small conductance calcium-activated potassium chann... 28 6.0
>gi|68226422 Yip1 domain family, member 5 [Homo sapiens]
Length = 257
Score = 527 bits (1357), Expect = e-150
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQ 60
MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQ
Sbjct: 1 MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQ 60
Query: 61 PYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 120
PYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS
Sbjct: 61 PYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 120
Query: 121 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV
Sbjct: 121 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
Query: 181 ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV 240
ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV
Sbjct: 181 ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV 240
Query: 241 AYPCALLYGVFALISVF 257
AYPCALLYGVFALISVF
Sbjct: 241 AYPCALLYGVFALISVF 257
>gi|32401427 Yip1 domain family, member 5 [Homo sapiens]
Length = 257
Score = 527 bits (1357), Expect = e-150
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQ 60
MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQ
Sbjct: 1 MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQ 60
Query: 61 PYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 120
PYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS
Sbjct: 61 PYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS 120
Query: 121 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV
Sbjct: 121 IMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCV 180
Query: 181 ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV 240
ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV
Sbjct: 181 ASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLV 240
Query: 241 AYPCALLYGVFALISVF 257
AYPCALLYGVFALISVF
Sbjct: 241 AYPCALLYGVFALISVF 257
>gi|148664222 Yip1 domain family, member 7 [Homo sapiens]
Length = 280
Score = 315 bits (807), Expect = 2e-86
Identities = 160/259 (61%), Positives = 198/259 (76%), Gaps = 5/259 (1%)
Query: 1 MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYS--KQYAGYDYSQQGRFVPPDMMQP 58
MS ++DFYQ++++ID+Q Q D G Y KQ AG + Q FVP +M+
Sbjct: 25 MSNLAQFDSDFYQSNFTIDNQEQSGNDSNAYGNLYGSRKQQAG-EQPQPASFVPSEMLM- 82
Query: 59 QQPYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVAD 118
Y GQ +QP S P Y ++F++EPPLLEELGI+FDHIWQKTLTVL+P+K D
Sbjct: 83 SSGYAGQFFQPASNSDYYSQSP-YIDSFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVD 141
Query: 119 GSIMNETDLAGPMVFCLAFGATLLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFG 178
GSIMNETDL GP++FC+A GATLLLAGK+QFGYVYG+SAIGCL + LLNLMS +GVS+G
Sbjct: 142 GSIMNETDLTGPILFCVALGATLLLAGKVQFGYVYGMSAIGCLVIHALLNLMSSSGVSYG 201
Query: 179 CVASVLGYCLLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQL 238
CVASVLGYCLLPM++LS A+ FSLQG+ GI+ + IIGWCS SASKIFI+AL MEGQQL
Sbjct: 202 CVASVLGYCLLPMVILSGCAMFFSLQGIFGIMSSLVIIGWCSLSASKIFIAALHMEGQQL 261
Query: 239 LVAYPCALLYGVFALISVF 257
LVAYPCA+LYG+FAL+++F
Sbjct: 262 LVAYPCAILYGLFALLTIF 280
>gi|14150076 Yip1 domain family, member 4 [Homo sapiens]
Length = 244
Score = 64.3 bits (155), Expect = 1e-10
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 9/170 (5%)
Query: 87 EDEPPLLEELGINFDHIWQKTLTVLHPLKVADGS---IMNETDLAGPMVFCLAFGATLLL 143
ED PLLEEL I+ I+ K VL P+ + + + D GP+ L F L
Sbjct: 72 EDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLY 131
Query: 144 AGKIQFGYVYGISAIGCLGMFCLLNLMSMTG--VSFGCVASVLGYCLLPMILLSSFAVIF 201
QF V I I G + L + G V++G V V+GY LLP+I+++ ++
Sbjct: 132 G---QFRVVSWIITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPVLLVV 188
Query: 202 SLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVF 251
+V ++ + W ++SA+ + + + LL+ YP LLY F
Sbjct: 189 GSFEVVSTLIKLFGVFWAAYSAASLLVGEEFKTKKPLLI-YPIFLLYIYF 237
>gi|28603852 Yip1 domain family, member 6 [Homo sapiens]
Length = 236
Score = 42.4 bits (98), Expect = 4e-04
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 103 IWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLLLA-------GKIQFGYVYGI 155
+ +K + VL+P K +++ + DL GP++ C+ L G QF V+ I
Sbjct: 69 VGKKFMHVLYPRK--SNTLLRDWDLWGPLILCVTLALMLQRDSADSEKDGGPQFAEVFVI 126
Query: 156 SAIGCLGMFCLLNLMSMTG-VSFGCVASVLGYCLLPM--ILLSSFAVIFSLQG----MVG 208
G + + LN + G +SF VLGYC+LP+ +L V+ + G MV
Sbjct: 127 VWFGAVTI--TLNSKLLGGNISFFQSLCVLGYCILPLTVAMLICRLVLLADPGPVNFMVR 184
Query: 209 IILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFA 252
+ + + W S AS ++ ++ L YP L Y V +
Sbjct: 185 LFVVIVMFAW-SIVASTALLADSQPPNRRALAVYPVFLFYFVIS 227
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 35.0 bits (79), Expect = 0.064
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Query: 2 SGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQ------YAGYDYSQQGRFVPPDM 55
SG+ Y S Q QQ PYS+Q +A Y QQ + PP +
Sbjct: 460 SGYGQQGQTPYYNQQSPHPQQQQP--------PYSQQPPSQTPHAQPSYQQQPQSQPPQL 511
Query: 56 MQPQQPYTGQIYQPTQAYTPASPQPFYGNNFEDEP 90
Q PY+ Q QP +PA P P + + P
Sbjct: 512 QSSQPPYSQQPSQPPHQQSPA-PYPSQQSTTQQHP 545
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 35.0 bits (79), Expect = 0.064
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Query: 2 SGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQ------YAGYDYSQQGRFVPPDM 55
SG+ Y S Q QQ PYS+Q +A Y QQ + PP +
Sbjct: 460 SGYGQQGQTPYYNQQSPHPQQQQP--------PYSQQPPSQTPHAQPSYQQQPQSQPPQL 511
Query: 56 MQPQQPYTGQIYQPTQAYTPASPQPFYGNNFEDEP 90
Q PY+ Q QP +PA P P + + P
Sbjct: 512 QSSQPPYSQQPSQPPHQQSPA-PYPSQQSTTQQHP 545
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 32.7 bits (73), Expect = 0.32
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 13 QTSYSIDDQSQQSYD-YGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQPYTGQIYQPTQ 71
QT+ S Q+ Y YG S YS+ Y GY+ +Q + QQPY Q Q
Sbjct: 40 QTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQSSY-------SQQPYNNQGQQQNM 92
Query: 72 -------AYTPASPQPFYG 83
P+ QP YG
Sbjct: 93 ESSGSQGGRAPSYDQPDYG 111
>gi|239746699 PREDICTED: hypothetical protein XP_002343813 [Homo
sapiens]
Length = 140
Score = 32.0 bits (71), Expect = 0.54
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 26 YDYGGSGGPYSKQYAGYD--YSQQGRFVPPDMM--QPQQPYTGQIYQPTQAYTPASPQPF 81
+D GG+G P+ + AGY + GR V + P P + + A PQPF
Sbjct: 70 HDPGGAGRPWPRPRAGYSFRFGWGGRAVGACRVPSPPPPPLRRREREAAAGPPQAPPQPF 129
Query: 82 YGNNFEDEPP 91
+N E PP
Sbjct: 130 QVSNLEAPPP 139
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 31.2 bits (69), Expect = 0.93
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 3 GFENLNTDFYQTSYSIDDQSQQSYD-YGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQP 61
G+ + + + D Q+Y Y G YS+ Y GY+ +Q + QQP
Sbjct: 27 GYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYGGYENQKQSSY-------SQQP 79
Query: 62 YTGQIYQPTQ-------AYTPASPQPFYG 83
Y Q Q P+ QP YG
Sbjct: 80 YNNQGQQQNMESSGSQGGRAPSYDQPDYG 108
>gi|239757686 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 31.2 bits (69), Expect = 0.93
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 26 YDYGGSGGPYSKQYAGYD--YSQQGRFVPP-DMMQPQQPYTGQIYQPTQAYTP-ASPQPF 81
+D GG+G P+ + AGY + GR V + P P + + A P A PQPF
Sbjct: 70 HDPGGAGRPWPRPRAGYSFRFGWGGRAVGACRVPSPPPPPLRRGEREAAAGPPQAPPQPF 129
Query: 82 YGNNFEDEPP 91
+N E PP
Sbjct: 130 QVSNLEAPPP 139
>gi|239752176 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 31.2 bits (69), Expect = 0.93
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 26 YDYGGSGGPYSKQYAGYD--YSQQGRFVPP-DMMQPQQPYTGQIYQPTQAYTP-ASPQPF 81
+D GG+G P+ + AGY + GR V + P P + + A P A PQPF
Sbjct: 70 HDPGGAGRPWPRPRAGYSFRFGWGGRAVGACRVPSPPPPPLRRGEREAAAGPPQAPPQPF 129
Query: 82 YGNNFEDEPP 91
+N E PP
Sbjct: 130 QVSNLEAPPP 139
>gi|21361320 TRK-fused [Homo sapiens]
Length = 400
Score = 31.2 bits (69), Expect = 0.93
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 12 YQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQ-------PQQPYTG 64
Y SYS QQ + G G + Q +S Q + +P Q P Q YT
Sbjct: 272 YSASYSQQTGPQQPQQFQGYGQQPTSQAPAPAFSGQPQQLPAQPPQQYQASNYPAQTYTA 331
Query: 65 QIYQPTQAYTPASPQP 80
Q QPT + QP
Sbjct: 332 QTSQPTNYTVAPASQP 347
>gi|56090139 TRK-fused [Homo sapiens]
Length = 400
Score = 31.2 bits (69), Expect = 0.93
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 12 YQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQ-------PQQPYTG 64
Y SYS QQ + G G + Q +S Q + +P Q P Q YT
Sbjct: 272 YSASYSQQTGPQQPQQFQGYGQQPTSQAPAPAFSGQPQQLPAQPPQQYQASNYPAQTYTA 331
Query: 65 QIYQPTQAYTPASPQP 80
Q QPT + QP
Sbjct: 332 QTSQPTNYTVAPASQP 347
>gi|189491628 enamelin [Homo sapiens]
Length = 1142
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 21 QSQQSYDYGGSGGPYSKQYAGYDYS--QQGRFVPPDMMQPQQPYTGQIYQPTQAYTPASP 78
Q++ + GGP + Y G Y+ Q ++P + P +P Y ++P
Sbjct: 668 QNRWGEELSFKGGPTVRHYEGEQYTSNQPKEYLPYSLDNPSKPREDFYYSEFYPWSPDEN 727
Query: 79 QPFYGNNFEDEPPLLEELG 97
P Y N PP +E G
Sbjct: 728 FPSY-NTASTMPPPIESRG 745
>gi|238908505 DNA-directed RNA polymerase III B isoform 2 [Homo
sapiens]
Length = 1075
Score = 30.0 bits (66), Expect = 2.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 188 LLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALL 247
LL +++SS A + G G++ G GWC + S +S+L + Y C LL
Sbjct: 1006 LLERLMISSDAFEVDVCGQCGLL---GYSGWCHYCKSSCHVSSLR-------IPYACKLL 1055
Query: 248 Y 248
+
Sbjct: 1056 F 1056
>gi|238908503 DNA-directed RNA polymerase III B isoform 1 [Homo
sapiens]
Length = 1133
Score = 30.0 bits (66), Expect = 2.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 188 LLPMILLSSFAVIFSLQGMVGIILTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALL 247
LL +++SS A + G G++ G GWC + S +S+L + Y C LL
Sbjct: 1064 LLERLMISSDAFEVDVCGQCGLL---GYSGWCHYCKSSCHVSSLR-------IPYACKLL 1113
Query: 248 Y 248
+
Sbjct: 1114 F 1114
>gi|39777614 SS18-like protein 1 [Homo sapiens]
Length = 396
Score = 30.0 bits (66), Expect = 2.1
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 20/69 (28%)
Query: 15 SYSIDDQSQQSYD----------YGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQPYTG 64
+Y ++QSYD Y G YS+Q AGY QQG QQ Y+
Sbjct: 280 AYQQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGY---QQG-------AAQQQTYSQ 329
Query: 65 QIYQPTQAY 73
Q Y Q+Y
Sbjct: 330 QQYPSQQSY 338
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 29.6 bits (65), Expect = 2.7
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 17 SIDDQSQQSYDYGGSGGPYSKQYAGY---DYSQQGRFVPPDMMQPQQPYTGQIYQPTQAY 73
S + +S+D+ G G S+ AG + Q R P + P P QP Q
Sbjct: 242 SSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPP------QPGQPG 295
Query: 74 TPASPQPFYG--NNFEDEPP 91
TP +P G F D+ P
Sbjct: 296 TPGGSRPGPGPAGRFPDQKP 315
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 29.6 bits (65), Expect = 2.7
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 17 SIDDQSQQSYDYGGSGGPYSKQYAGY---DYSQQGRFVPPDMMQPQQPYTGQIYQPTQAY 73
S + +S+D+ G G S+ AG + Q R P + P P QP Q
Sbjct: 238 SSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPP------QPGQPG 291
Query: 74 TPASPQPFYG--NNFEDEPP 91
TP +P G F D+ P
Sbjct: 292 TPGGSRPGPGPAGRFPDQKP 311
>gi|156415988 zinc finger and BTB domain containing 7B [Homo
sapiens]
Length = 539
Score = 29.3 bits (64), Expect = 3.5
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 29 GGSGGPYSKQYAGYDYSQQ-GRFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYGNNFE 87
GGSG G YS G PP+ Q +PY G+ + Y PA YG
Sbjct: 246 GGSG-------PGDSYSPPTGTASPPEGPQSYEPYEGEEEEEELVYPPA-----YGLAQG 293
Query: 88 DEPPLL-EELGINFDHI---WQKTLTVLHPLKVADG 119
PPL EELG + D I L+ LH +A G
Sbjct: 294 GGPPLSPEELGSDEDAIDPDLMAYLSSLHQDNLAPG 329
>gi|239752951 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 3 [Homo sapiens]
Length = 573
Score = 29.3 bits (64), Expect = 3.5
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 29 GGSGGPYSKQYAGYDYSQQ-GRFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYGNNFE 87
GGSG G YS G PP+ Q +PY G+ + Y PA YG
Sbjct: 280 GGSG-------PGDSYSPPTGTASPPEGPQSYEPYEGEEEEEELVYPPA-----YGLAQG 327
Query: 88 DEPPLL-EELGINFDHI---WQKTLTVLHPLKVADG 119
PPL EELG + D I L+ LH +A G
Sbjct: 328 GGPPLSPEELGSDEDAIDPDLMAYLSSLHQDNLAPG 363
>gi|239752949 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 1 [Homo sapiens]
Length = 539
Score = 29.3 bits (64), Expect = 3.5
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 29 GGSGGPYSKQYAGYDYSQQ-GRFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYGNNFE 87
GGSG G YS G PP+ Q +PY G+ + Y PA YG
Sbjct: 246 GGSG-------PGDSYSPPTGTASPPEGPQSYEPYEGEEEEEELVYPPA-----YGLAQG 293
Query: 88 DEPPLL-EELGINFDHI---WQKTLTVLHPLKVADG 119
PPL EELG + D I L+ LH +A G
Sbjct: 294 GGPPLSPEELGSDEDAIDPDLMAYLSSLHQDNLAPG 329
>gi|239752947 PREDICTED: similar to kruppel-related zinc finger
protein hcKrox isoform 2 [Homo sapiens]
Length = 539
Score = 29.3 bits (64), Expect = 3.5
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 17/96 (17%)
Query: 29 GGSGGPYSKQYAGYDYSQQ-GRFVPPDMMQPQQPYTGQIYQPTQAYTPASPQPFYGNNFE 87
GGSG G YS G PP+ Q +PY G+ + Y PA YG
Sbjct: 246 GGSG-------PGDSYSPPTGTASPPEGPQSYEPYEGEEEEEELVYPPA-----YGLAQG 293
Query: 88 DEPPLL-EELGINFDHI---WQKTLTVLHPLKVADG 119
PPL EELG + D I L+ LH +A G
Sbjct: 294 GGPPLSPEELGSDEDAIDPDLMAYLSSLHQDNLAPG 329
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 29.3 bits (64), Expect = 3.5
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 23 QQSYDYGG-SGGPYSKQ-YAGYDYSQQGRFVPPDMMQPQQPYTGQIYQPTQAYTPASP-Q 79
Q Y GG GPY ++ Y Y Q G P PQ P+ Y Q + P
Sbjct: 71 QGPYPQGGYPQGPYPQEGYPQGPYPQGGY---PQGPYPQSPFPPNPYGQPQVFPGQDPDS 127
Query: 80 PFYGNNFEDEPP 91
P +GN E+ PP
Sbjct: 128 PQHGNYQEEGPP 139
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 29.3 bits (64), Expect = 3.5
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 23 QQSYDYGG-SGGPYSKQ-YAGYDYSQQGRFVPPDMMQPQQPYTGQIYQPTQAYTPASP-Q 79
Q Y GG GPY ++ Y Y Q G P PQ P+ Y Q + P
Sbjct: 71 QGPYPQGGYPQGPYPQEGYPQGPYPQGGY---PQGPYPQSPFPPNPYGQPQVFPGQDPDS 127
Query: 80 PFYGNNFEDEPP 91
P +GN E+ PP
Sbjct: 128 PQHGNYQEEGPP 139
>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
Length = 920
Score = 29.3 bits (64), Expect = 3.5
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 28 YGGSGGPYSKQYAGYDYSQQGRFVPPDMMQ--PQQPYTGQIYQPTQAYTPASPQPFYGNN 85
+ G G ++ YSQ G P + P P G PT TP+S P+ N
Sbjct: 336 FNGQGASFNG--GSVSYSQPGLSGPTRSIPGYPSSPLPGN---PTPPMTPSSSVPYMSPN 390
Query: 86 FEDEPPLLEELGINFDHI 103
E + P L +L N + +
Sbjct: 391 QEVKSPFLPDLKPNLNSL 408
>gi|153792230 hypothetical protein LOC57670 [Homo sapiens]
Length = 1884
Score = 28.9 bits (63), Expect = 4.6
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 11 FYQTSYSIDDQSQQSYDYGGSG--GPYSKQYAGYDYSQQGRFVPPDMMQPQ----QPYTG 64
FY + + ++ + DYG + GP + G Q VPPD QPQ P+
Sbjct: 1687 FYSPAQTANNPCSRYEDYGMTPPTGPLPRPGFGPGLLQSTELVPPDPQQPQASAEAPFAA 1746
Query: 65 QIYQPTQAYTPASPQPFYG 83
+ + + A P+P G
Sbjct: 1747 RGIYSEEMPSVARPRPVGG 1765
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 28.9 bits (63), Expect = 4.6
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 22 SQQSYDYGGSGGPYSKQYAGYDYSQQGRFVP-----PDMMQPQQPYTGQIYQPTQAYT-- 74
+ Y YGGSGG S + +QQ P P QP T Y QA T
Sbjct: 1585 ASSQYGYGGSGGGSSAYHVFPTPAQQPVATPLMTPSYSYTTPSQPITTPQYHQLQASTTP 1644
Query: 75 ---PASPQPFYGNNFEDEPP 91
A PQP + + P
Sbjct: 1645 QSAQAQPQPSSSSRQRQQQP 1664
>gi|116805330 small conductance calcium-activated potassium
channel protein 3 isoform a [Homo sapiens]
Length = 731
Score = 28.5 bits (62), Expect = 6.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 57 QPQQPYTGQIYQPTQAYTPASPQPFYGNNFEDEPPLLEE 95
Q QQ Q QP PA+PQ G + + +PP L++
Sbjct: 30 QQQQQQQQQQQQPPPPAPPAAPQQPLGPSLQPQPPQLQQ 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.141 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,024,308
Number of Sequences: 37866
Number of extensions: 476237
Number of successful extensions: 1351
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 53
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.