Guide to the Human Genome
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Name: YIPF7 Sequence: fasta or formatted (280aa) NCBI GI: 148664222
Description:

Yip1 domain family, member 7

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         19           2
 C cysteine            2.5          7           1
 D aspartate           4.3         12           1
 E glutamate           3.6         10           2
 F phenylalanine       5.7         16           2
 G glycine             8.2         23           1
 H histidine           2.1          6           1
 I isoleucine          6.8         19           2
 K lysine              3.2          9           1
 L leucine            13.6         38           3
 M methionine          4.3         12           1
 N asparagine          3.9         11           1
 P proline             4.3         12           2
 Q glutamine           6.1         17           2
 R arginine            0.7          2           1
 S serine             11.1         31           3
 T threonine           2.9          8           1
 V valine              4.6         13           1
 W tryptophan          0.7          2           1
 Y tyrosine            4.6         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Yip1 domain family, member 7 
YIPF5                 0.539   Yip1 domain family, member 5 
YIPF5                 0.539   Yip1 domain family, member 5 
YIPF4                 0.067   Yip1 domain family, member 4 
YIPF6                 0.035   Yip1 domain family, member 6 
MYOZ2                 0.019   myozenin 2 
LBXCOR1               0.015   LBXCOR1 homolog 
EIF4G3                0.011   eukaryotic translation initiation factor 4 gamma, 3 ...
NKX2-1                0.009   thyroid transcription factor 1 isoform 1 
NKX2-1                0.009   thyroid transcription factor 1 isoform 2 
CAND1                 0.009   TIP120 protein 
ANAPC1                0.009   anaphase promoting complex subunit 1 
MAML2                 0.007   mastermind-like 2 
CATSPERG              0.006   hypothetical protein LOC57828 
FZD6                  0.006   frizzled 6 
LOXHD1                0.006   lipoxygenase homology domains 1 isoform 1 
SLC35B3               0.006   solute carrier family 35, member B3 
SLC35B3               0.006   solute carrier family 35, member B3 
SLC35B3               0.006   solute carrier family 35, member B3 
ZCCHC2                0.006   zinc finger, CCHC domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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