Guide to the Human Genome
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Name: YIPF5 Sequence: fasta or formatted (257aa) NCBI GI: 68226422
Description:

Yip1 domain family, member 5

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [257aa] Yip1 domain family, member 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         18           1
 C cysteine            2.7          7           1
 D aspartate           3.9         10           2
 E glutamate           2.7          7           2
 F phenylalanine       6.6         17           1
 G glycine            10.5         27           2
 H histidine           0.8          2           1
 I isoleucine          6.6         17           2
 K lysine              1.9          5           1
 L leucine            11.3         29           3
 M methionine          4.3         11           2
 N asparagine          2.7          7           2
 P proline             5.8         15           2
 Q glutamine           7.4         19           2
 R arginine            0.4          1           1
 S serine              8.6         22           2
 T threonine           4.3         11           1
 V valine              5.1         13           1
 W tryptophan          0.8          2           1
 Y tyrosine            6.6         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Yip1 domain family, member 5 
YIPF5                 1.000   Yip1 domain family, member 5 
YIPF7                 0.578   Yip1 domain family, member 7 
YIPF4                 0.078   Yip1 domain family, member 4 
YIPF6                 0.034   Yip1 domain family, member 6 
ARID1A                0.020   AT rich interactive domain 1A isoform a 
ARID1A                0.020   AT rich interactive domain 1A isoform b 
TAF15                 0.016   TBP-associated factor 15 isoform 1 
LOC100288305          0.014   PREDICTED: hypothetical protein XP_002343813 
TAF15                 0.012   TBP-associated factor 15 isoform 2 
LOC100293994          0.012   PREDICTED: hypothetical protein 
LOC100288305          0.012   PREDICTED: hypothetical protein 
TFG                   0.012   TRK-fused 
TFG                   0.012   TRK-fused 
ENAM                  0.010   enamelin 
POLR3B                0.010   DNA-directed RNA polymerase III B isoform 2 
POLR3B                0.010   DNA-directed RNA polymerase III B isoform 1 
SS18L1                0.010   SS18-like protein 1 
RPH3A                 0.010   rabphilin 3A homolog isoform 1 
RPH3A                 0.010   rabphilin 3A homolog isoform 2 
ZBTB7B                0.008   zinc finger and BTB domain containing 7B 
LOC100293130          0.008   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          0.008   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          0.008   PREDICTED: similar to kruppel-related zinc finger p...
GRINA                 0.008   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.008   glutamate receptor, ionotropic, N-methyl D-aspartate...
ZMIZ2                 0.008   zinc finger, MIZ-type containing 2 isoform 1 
KIAA1549              0.008   hypothetical protein LOC57670 
SUPT6H                0.008   suppressor of Ty 6 homolog 
KCNN3                 0.006   small conductance calcium-activated potassium chann...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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