Guide to the Human Genome
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Name: LOC100288305 Sequence: fasta or formatted (140aa) NCBI GI: 239746699
Description:

PREDICTED: hypothetical protein XP_002343813

Not currently referenced in the text

Other entries for this name:
alt prot {140aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         13           3
 C cysteine            2.9          4           1
 D aspartate           2.1          3           2
 E glutamate           3.6          5           1
 F phenylalanine       2.9          4           1
 G glycine             9.3         13           2
 H histidine           3.6          5           2
 I isoleucine          0.0          0           0
 K lysine              0.7          1           1
 L leucine            10.0         14           2
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline            17.1         24           5
 Q glutamine           5.0          7           1
 R arginine           12.9         18           3
 S serine              7.1         10           3
 T threonine           1.4          2           1
 V valine              5.7          8           2
 W tryptophan          2.1          3           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343813 
LOC100293994          0.989   PREDICTED: hypothetical protein 
LOC100288305          0.989   PREDICTED: hypothetical protein 
HOXB4                 0.057   homeobox B4 
INF2                  0.054   inverted formin 2 isoform 2 
INF2                  0.054   inverted formin 2 isoform 1 
SF3B4                 0.050   splicing factor 3b, subunit 4 
FMN1                  0.047   formin 1 
SRRM1                 0.047   serine/arginine repetitive matrix 1 
ENAH                  0.043   enabled homolog isoform a 
ENAH                  0.043   enabled homolog isoform b 
LOC100292124          0.043   PREDICTED: hypothetical protein XP_002346387 
LOC100293254          0.043   PREDICTED: hypothetical protein 
LOC100289377          0.043   PREDICTED: hypothetical protein 
LOC100289377          0.043   PREDICTED: hypothetical protein XP_002343119 
WASF1                 0.039   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.039   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.039   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.039   Wiskott-Aldrich syndrome protein family member 1 [Hom...
DIAPH1                0.039   diaphanous 1 isoform 2 
DIAPH1                0.039   diaphanous 1 isoform 1 
PAPPA                 0.039   pregnancy-associated plasma protein A preproprotein ...
FMNL1                 0.039   formin-like 1 
FMNL2                 0.039   formin-like 2 
IQSEC2                0.039   IQ motif and Sec7 domain 2 isoform1 
ESPN                  0.039   espin 
SFPQ                  0.039   splicing factor proline/glutamine rich (polypyrimidin...
PDCD7                 0.039   programmed cell death 7 
DVL1                  0.036   dishevelled 1 
WASL                  0.036   Wiskott-Aldrich syndrome gene-like protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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