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Search of human proteins with 6806898
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6806898 alpha-synuclein isoform NACP112 [Homo sapiens]
(112 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6806898 alpha-synuclein isoform NACP112 [Homo sapiens] 216 2e-57
gi|225690604 alpha-synuclein isoform NACP140 [Homo sapiens] 201 8e-53
gi|225690602 alpha-synuclein isoform NACP140 [Homo sapiens] 201 8e-53
gi|4507109 alpha-synuclein isoform NACP140 [Homo sapiens] 201 8e-53
gi|48255903 beta-synuclein [Homo sapiens] 131 1e-31
gi|4507111 beta-synuclein [Homo sapiens] 131 1e-31
gi|209693439 synuclein, gamma (breast cancer-specific protein 1)... 122 6e-29
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens] 31 0.24
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens] 31 0.24
gi|20127486 mannose 6 phosphate receptor binding protein 1 [Homo... 30 0.54
gi|122937195 plasma membrane associated protein, S3-12 [Homo sap... 29 0.71
gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Hom... 29 0.92
gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Hom... 29 0.92
gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Hom... 29 0.92
gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Hom... 29 0.92
gi|22748615 hypothetical protein LOC90488 [Homo sapiens] 28 1.2
gi|110349721 titin isoform novex-3 [Homo sapiens] 28 2.1
gi|110349719 titin isoform N2-A [Homo sapiens] 28 2.1
gi|110349717 titin isoform novex-2 [Homo sapiens] 28 2.1
gi|110349713 titin isoform novex-1 [Homo sapiens] 28 2.1
gi|110349715 titin isoform N2-B [Homo sapiens] 28 2.1
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 27 4.6
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 27 4.6
gi|21361598 membrane protein, palmitoylated 6 [Homo sapiens] 27 4.6
gi|241982712 TBP-interacting protein isoform 1 [Homo sapiens] 26 6.0
gi|112420977 TBP-interacting protein isoform 2 [Homo sapiens] 26 6.0
gi|22538446 tumor protein p53 inducible protein 3 [Homo sapiens] 26 6.0
gi|22538444 tumor protein p53 inducible protein 3 [Homo sapiens] 26 6.0
gi|224591416 serine/threonine protein kinase pim-3 [Homo sapiens] 26 7.8
gi|61743980 stabilin 2 precursor [Homo sapiens] 26 7.8
>gi|6806898 alpha-synuclein isoform NACP112 [Homo sapiens]
Length = 112
Score = 216 bits (551), Expect = 2e-57
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKEGYQDYEPEA 112
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKEGYQDYEPEA
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKEGYQDYEPEA 112
>gi|225690604 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 201 bits (512), Expect = 8e-53
Identities = 112/140 (80%), Positives = 112/140 (80%), Gaps = 28/140 (20%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK------------------ 102
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
Query: 103 ----------EGYQDYEPEA 112
EGYQDYEPEA
Sbjct: 121 DNEAYEMPSEEGYQDYEPEA 140
>gi|225690602 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 201 bits (512), Expect = 8e-53
Identities = 112/140 (80%), Positives = 112/140 (80%), Gaps = 28/140 (20%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK------------------ 102
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
Query: 103 ----------EGYQDYEPEA 112
EGYQDYEPEA
Sbjct: 121 DNEAYEMPSEEGYQDYEPEA 140
>gi|4507109 alpha-synuclein isoform NACP140 [Homo sapiens]
Length = 140
Score = 201 bits (512), Expect = 8e-53
Identities = 112/140 (80%), Positives = 112/140 (80%), Gaps = 28/140 (20%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK
Sbjct: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK------------------ 102
EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGK
Sbjct: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDP 120
Query: 103 ----------EGYQDYEPEA 112
EGYQDYEPEA
Sbjct: 121 DNEAYEMPSEEGYQDYEPEA 140
>gi|48255903 beta-synuclein [Homo sapiens]
Length = 134
Score = 131 bits (329), Expect = 1e-31
Identities = 71/99 (71%), Positives = 81/99 (81%), Gaps = 11/99 (11%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLS AKEGVVAAAEKTKQGV EAA KTKEGVLYVGSKT+EGVV GVA+VAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ 99
EQ +++GGAV + GAG+IAAATG VK+++
Sbjct: 61 EQASHLGGAVFS-----------GAGNIAAATGLVKREE 88
>gi|4507111 beta-synuclein [Homo sapiens]
Length = 134
Score = 131 bits (329), Expect = 1e-31
Identities = 71/99 (71%), Positives = 81/99 (81%), Gaps = 11/99 (11%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVFMKGLS AKEGVVAAAEKTKQGV EAA KTKEGVLYVGSKT+EGVV GVA+VAEKTK
Sbjct: 1 MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ 99
EQ +++GGAV + GAG+IAAATG VK+++
Sbjct: 61 EQASHLGGAVFS-----------GAGNIAAATGLVKREE 88
>gi|209693439 synuclein, gamma (breast cancer-specific protein 1)
[Homo sapiens]
Length = 127
Score = 122 bits (306), Expect = 6e-29
Identities = 66/100 (66%), Positives = 74/100 (74%)
Query: 1 MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTK 60
MDVF KG S AKEGVV A EKTKQGV EAA KTKEGV+YVG+KTKE VV V +VAEKTK
Sbjct: 1 MDVFKKGFSIAKEGVVGAVEKTKQGVTEAAEKTKEGVMYVGAKTKENVVQSVTSVAEKTK 60
Query: 61 EQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQL 100
EQ V AVV+ V VA KTVE A +IA +G V+K+ L
Sbjct: 61 EQANAVSEAVVSSVNTVATKTVEEAENIAVTSGVVRKEDL 100
>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
Length = 4363
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 14 GVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTG 73
GV +A K +++ GKT + +E + + AT E + + ++ G
Sbjct: 4079 GVSNSAAKFAGTLSDGLGKTMDNR---HQSEREYIRYHAATSGEHLVAGIHGLAHGIIGG 4135
Query: 74 VTAVAQKTVEGAGSIAAATGFV 95
+T+V TVEG + +GF+
Sbjct: 4136 LTSVITSTVEGVKTEGGVSGFI 4157
>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
Length = 4388
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 14 GVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTG 73
GV +A K +++ GKT + +E + + AT E + + ++ G
Sbjct: 4104 GVSNSAAKFAGTLSDGLGKTMDNR---HQSEREYIRYHAATSGEHLVAGIHGLAHGIIGG 4160
Query: 74 VTAVAQKTVEGAGSIAAATGFV 95
+T+V TVEG + +GF+
Sbjct: 4161 LTSVITSTVEGVKTEGGVSGFI 4182
>gi|20127486 mannose 6 phosphate receptor binding protein 1 [Homo
sapiens]
Length = 434
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 6 KGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTN 65
+GL K +E + + T++ +A+ TKE V S +E V TVA + E V
Sbjct: 98 RGLDKLEENLPILQQPTEKVLAD----TKELVSSKVSGAQEMVSSAKDTVATQLSEAVDA 153
Query: 66 VGGAVVTGVTAVAQKTVEGAGSI 88
GAV +GV G S+
Sbjct: 154 TRGAVQSGVDKTKSVVTGGVQSV 176
>gi|122937195 plasma membrane associated protein, S3-12 [Homo
sapiens]
Length = 1357
Score = 29.3 bits (64), Expect = 0.71
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 7 GLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNV 66
G + +G V KT Q +A T + +K +G V G + TK +T
Sbjct: 824 GAANVAKGAVQTGLKTTQNIATGTKNTLGSGVTGAAKVAKGAVQG---GLDTTKSVLTGT 880
Query: 67 GGAVVTGVTA---VAQKTVE 83
AV TG+T +A+ TV+
Sbjct: 881 KDAVSTGLTGAVNLAKGTVQ 900
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 7 GLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNV 66
G+ AK + + GV AA K G + G KT + + G N
Sbjct: 803 GVDTAKTVLTGTKDTVCSGVTGAANVAK-GAVQTGLKTTQNIATGTK-----------NT 850
Query: 67 GGAVVTGVTAVAQKTVEG 84
G+ VTG VA+ V+G
Sbjct: 851 LGSGVTGAAKVAKGAVQG 868
>gi|42544121 vacuolar protein sorting 13C protein isoform 1A [Homo
sapiens]
Length = 3710
Score = 28.9 bits (63), Expect = 0.92
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 3 VFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVA------ 56
+F + A +G AE GV G T G V S+ V G+A +
Sbjct: 3397 LFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQ 3456
Query: 57 EKTKEQVTNV----------GG-----AVVTGVTAVAQKTVEGAGSIAAATGFVK 96
+K +E+++ GG VV GVT + K VEGA AA GF K
Sbjct: 3457 QKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAA-GFFK 3510
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 4 FMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKE 46
F KG+ K G+V A + G+ + A T +G+ T+E
Sbjct: 3508 FFKGIGK---GLVGAVARPTGGIVDMASSTFQGIQRAAESTEE 3547
>gi|66348091 vacuolar protein sorting 13C protein isoform 1B [Homo
sapiens]
Length = 3585
Score = 28.9 bits (63), Expect = 0.92
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 3 VFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVA------ 56
+F + A +G AE GV G T G V S+ V G+A +
Sbjct: 3397 LFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQ 3456
Query: 57 EKTKEQVTNV----------GG-----AVVTGVTAVAQKTVEGAGSIAAATGFVK 96
+K +E+++ GG VV GVT + K VEGA AA GF K
Sbjct: 3457 QKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAA-GFFK 3510
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 4 FMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKE 46
F KG+ K G+V A + G+ + A T +G+ T+E
Sbjct: 3508 FFKGIGK---GLVGAVARPTGGIVDMASSTFQGIQRAAESTEE 3547
>gi|66347845 vacuolar protein sorting 13C protein isoform 2B [Homo
sapiens]
Length = 3628
Score = 28.9 bits (63), Expect = 0.92
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 3 VFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVA------ 56
+F + A +G AE GV G T G V S+ V G+A +
Sbjct: 3440 LFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQ 3499
Query: 57 EKTKEQVTNV----------GG-----AVVTGVTAVAQKTVEGAGSIAAATGFVK 96
+K +E+++ GG VV GVT + K VEGA AA GF K
Sbjct: 3500 QKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAA-GFFK 3553
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 4 FMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKE 46
F KG+ K G+V A + G+ + A T +G+ T+E
Sbjct: 3551 FFKGIGK---GLVGAVARPTGGIVDMASSTFQGIQRAAESTEE 3590
>gi|66347828 vacuolar protein sorting 13C protein isoform 2A [Homo
sapiens]
Length = 3753
Score = 28.9 bits (63), Expect = 0.92
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 3 VFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVA------ 56
+F + A +G AE GV G T G V S+ V G+A +
Sbjct: 3440 LFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQ 3499
Query: 57 EKTKEQVTNV----------GG-----AVVTGVTAVAQKTVEGAGSIAAATGFVK 96
+K +E+++ GG VV GVT + K VEGA AA GF K
Sbjct: 3500 QKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAA-GFFK 3553
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 4 FMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKE 46
F KG+ K G+V A + G+ + A T +G+ T+E
Sbjct: 3551 FFKGIGK---GLVGAVARPTGGIVDMASSTFQGIQRAAESTEE 3590
>gi|22748615 hypothetical protein LOC90488 [Homo sapiens]
Length = 116
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 29 AAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTV 82
A G T GV ++G K+ E V TV V AV GVTAV V
Sbjct: 49 AVGATIGGVAWIGGKSLEVTKTAVTTVPSMGIGLVKGGVSAVAGGVTAVGSAVV 102
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 8 LSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQ 62
+++ +E V++A E+T Q A + V + ++ V V A+K KEQ
Sbjct: 435 MARVREPVISAVEQTAQRTTTTAVHIQPAQEQVRKEAEKTAVTKVVVAADKAKEQ 489
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 49 VHGVATVAEKTKEQVT---NVGGAVVTGVTAVAQKTVEGAG--SIAAATGFVKKDQLGKE 103
VHG + + E + Q N GG TG ++ + + G G AAA + + G +
Sbjct: 21 VHGSSRLEEFSPRQAQMFQNFGG---TGGSSGSSGSGSGGGRRGAAAAAAAMASETSGHQ 77
Query: 104 GYQDYEPEA 112
GYQ + EA
Sbjct: 78 GYQGFRKEA 86
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 49 VHGVATVAEKTKEQVT---NVGGAVVTGVTAVAQKTVEGAG--SIAAATGFVKKDQLGKE 103
VHG + + E + Q N GG TG ++ + + G G AAA + + G +
Sbjct: 21 VHGSSRLEEFSPRQAQMFQNFGG---TGGSSGSSGSGSGGGRRGAAAAAAAMASETSGHQ 77
Query: 104 GYQDYEPEA 112
GYQ + EA
Sbjct: 78 GYQGFRKEA 86
>gi|21361598 membrane protein, palmitoylated 6 [Homo sapiens]
Length = 540
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 34 KEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTV 82
++G+L+VG KE H V ++ +E + N+ G+V + + T+
Sbjct: 165 RQGLLHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTI 213
>gi|241982712 TBP-interacting protein isoform 1 [Homo sapiens]
Length = 1236
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 52 VATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVK 96
+ATV + + V G V++ + + + + AG +AAA GF++
Sbjct: 718 LATVTQAQPASLVEVSGPVLSELLRLLRSPLLPAGVLAAAEGFLQ 762
>gi|112420977 TBP-interacting protein isoform 2 [Homo sapiens]
Length = 1119
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 52 VATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVK 96
+ATV + + V G V++ + + + + AG +AAA GF++
Sbjct: 625 LATVTQAQPASLVEVSGPVLSELLRLLRSPLLPAGVLAAAEGFLQ 669
>gi|22538446 tumor protein p53 inducible protein 3 [Homo sapiens]
Length = 332
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 51 GVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ 99
GV T A Q+T + GA+ VTA +QK ++ A + AA GF K +
Sbjct: 152 GVGTAAI----QLTRMAGAIPL-VTAGSQKKLQMAEKLGAAAGFNYKKE 195
>gi|22538444 tumor protein p53 inducible protein 3 [Homo sapiens]
Length = 332
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 51 GVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQ 99
GV T A Q+T + GA+ VTA +QK ++ A + AA GF K +
Sbjct: 152 GVGTAAI----QLTRMAGAIPL-VTAGSQKKLQMAEKLGAAAGFNYKKE 195
>gi|224591416 serine/threonine protein kinase pim-3 [Homo sapiens]
Length = 326
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 20 EKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQ 79
EK Q V G G +Y GS+ +G+ V V ++ + ++GGA V + +
Sbjct: 37 EKAYQ-VGAVLGSGGFGTVYAGSRIADGLPVAVKHVVKERVTEWGSLGGATVPLEVVLLR 95
Query: 80 KTVEGAGSIAAATGFVK 96
K G+ A G ++
Sbjct: 96 K----VGAAGGARGVIR 108
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 39 YVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTG 73
Y T +GV+HG+ V E K + N ++ G
Sbjct: 1248 YTNVATDKGVIHGLGKVLEIQKNRCDNNDTTIIRG 1282
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.124 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,307,200
Number of Sequences: 37866
Number of extensions: 107410
Number of successful extensions: 349
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 60
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.