Guide to the Human Genome
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Name: TIMP4 Sequence: fasta or formatted (224aa) NCBI GI: 4507515
Description:

tissue inhibitor of metalloproteinase 4 precursor

Referenced in:

Protease Inhibitors
Synapses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         13           1
 C cysteine            5.4         12           1
 D aspartate           4.0          9           1
 E glutamate           5.4         12           1
 F phenylalanine       2.2          5           1
 G glycine             4.9         11           1
 H histidine           4.5         10           2
 I isoleucine          4.9         11           1
 K lysine              6.2         14           1
 L leucine            11.6         26           3
 M methionine          1.8          4           1
 N asparagine          2.2          5           1
 P proline             7.1         16           2
 Q glutamine           5.4         12           2
 R arginine            4.0          9           1
 S serine              6.7         15           2
 T threonine           4.0          9           2
 V valine              6.7         15           2
 W tryptophan          2.2          5           1
 Y tyrosine            4.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tissue inhibitor of metalloproteinase 4 precursor [Ho... 
TIMP2                 0.445   TIMP metallopeptidase inhibitor 2 precursor 
TIMP3                 0.399   tissue inhibitor of metalloproteinase 3 precursor [Ho...
TIMP1                 0.253   tissue inhibitor of metalloproteinase 1 precursor [Ho...
LTA                   0.009   lymphotoxin alpha precursor 
LTA                   0.009   lymphotoxin alpha precursor 
LOC100129700          0.009   PREDICTED: similar to hCG1805148 
LOC100129700          0.009   PREDICTED: similar to hCG1805148 
ZNF260                0.009   zinc finger protein 260 
FHL1                  0.007   four and a half LIM domains 1 isoform 1 
ATG9B                 0.007   ATG9 autophagy related 9 homolog B 
CELSR2                0.007   cadherin EGF LAG seven-pass G-type receptor 2 
SSPO                  0.007   SCO-spondin 
SH3RF1                0.007   SH3 domain containing ring finger 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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