Guide to the Human Genome
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Name: TNFSF13B Sequence: fasta or formatted (266aa) NCBI GI: 224548983
Description:

tumor necrosis factor superfamily, member 13b isoform 2

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [285aa] tumor necrosis factor superfamily, member 13b isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         24           2
 C cysteine            2.3          6           2
 D aspartate           3.4          9           2
 E glutamate           9.0         24           2
 F phenylalanine       3.8         10           2
 G glycine             7.5         20           1
 H histidine           1.5          4           2
 I isoleucine          3.4          9           1
 K lysine              7.5         20           2
 L leucine            13.5         36           3
 M methionine          1.5          4           1
 N asparagine          3.0          8           2
 P proline             4.9         13           2
 Q glutamine           4.1         11           1
 R arginine            4.5         12           1
 S serine              7.9         21           2
 T threonine           4.9         13           1
 V valine              5.3         14           2
 W tryptophan          0.4          1           1
 Y tyrosine            2.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor superfamily, member 13b isofo... 
TNFSF13B              0.976   tumor necrosis factor superfamily, member 13b isoform...
TNFSF13               0.130   tumor necrosis factor ligand superfamily, member 13 ...
TNFSF13               0.116   tumor necrosis factor ligand superfamily, member 13 i...
TNFSF12-TNFSF13       0.116   TNFSF12-TNFSF13 protein 
TNFSF13               0.110   tumor necrosis factor ligand superfamily, member 13 ...
EDA                   0.032   ectodysplasin A isoform EDA-A2 
TNF                   0.032   tumor necrosis factor alpha 
EDA                   0.024   ectodysplasin A isoform EDA-A1 
TNFSF10               0.018   tumor necrosis factor (ligand) superfamily, member 10...
LTA                   0.014   lymphotoxin alpha precursor 
LTA                   0.014   lymphotoxin alpha precursor 
FASLG                 0.012   fas ligand 
LOC727838             0.010   PREDICTED: similar to cancer/testis antigen family ...
MYO9B                 0.010   myosin IXB isoform 2 
MYO9B                 0.010   myosin IXB isoform 1 
TNFSF15               0.010   tumor necrosis factor (ligand) superfamily, member 1...
EHMT1                 0.010   euchromatic histone-lysine N-methyltransferase 1 is...
EHMT1                 0.010   euchromatic histone-lysine N-methyltransferase 1 is...
MNX1                  0.010   homeo box HB9 
USP35                 0.010   ubiquitin specific protease 35 
B4GALT4               0.010   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4...
B4GALT4               0.010   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4 ...
IGFBP3                0.008   insulin-like growth factor binding protein 3 isoform...
C7orf57               0.008   hypothetical protein LOC136288 
GGT6                  0.008   gamma-glutamyltransferase 6 isoform a 
ZNF526                0.008   zinc finger protein 526 
LOC389813             0.008   similar to CG15216-PA 
IGFBP3                0.006   insulin-like growth factor binding protein 3 isoform...
ZIC3                  0.006   zinc finger protein of the cerebellum 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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