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Search of human proteins with 67189007
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]
(264 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens] 527 e-150
gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens] 501 e-142
gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens] 490 e-139
gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens] 290 1e-78
gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens] 169 3e-42
gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens] 160 8e-40
gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens] 98 8e-21
gi|239745235 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|239756347 PREDICTED: similar to taste receptor protein 1 [Hom... 39 0.006
gi|239750872 PREDICTED: similar to taste receptor protein 1 [Hom... 39 0.006
gi|6631090 interphotoreceptor matrix proteoglycan 1 [Homo sapiens] 34 0.15
gi|89903008 neurofascin isoform 4 precursor [Homo sapiens] 33 0.20
gi|115647981 glutamine and serine rich 1 [Homo sapiens] 33 0.26
gi|15042969 transmembrane protein 27 [Homo sapiens] 33 0.26
gi|237858679 neurofascin isoform 3 precursor [Homo sapiens] 32 0.74
gi|237858677 neurofascin isoform 2 precursor [Homo sapiens] 32 0.74
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 32 0.74
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 32 0.74
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 30 1.7
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 30 2.2
gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens] 30 2.2
gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens] 30 2.2
gi|23592222 olfactory receptor, family 5, subfamily P, member 2 ... 30 2.2
gi|38788260 bromodomain PHD finger transcription factor isoform ... 30 2.8
gi|38788274 bromodomain PHD finger transcription factor isoform ... 30 2.8
gi|239742580 PREDICTED: similar to Putative POM121-like protein ... 29 4.8
gi|98986457 host cell factor 1 [Homo sapiens] 28 6.3
gi|167736355 mucin 4 isoform a [Homo sapiens] 28 6.3
gi|4757836 BRCA1 associated protein-1 [Homo sapiens] 28 6.3
gi|117190342 PHD finger protein 2 [Homo sapiens] 28 6.3
>gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]
Length = 264
Score = 527 bits (1357), Expect = e-150
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 61 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT 120
NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
Sbjct: 61 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT 120
Query: 121 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV 180
INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
Sbjct: 121 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV 180
Query: 181 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK 240
ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
Sbjct: 181 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK 240
Query: 241 VSAGNGGSSLSYTNPAVAATSANL 264
VSAGNGGSSLSYTNPAVAATSANL
Sbjct: 241 VSAGNGGSSLSYTNPAVAATSANL 264
>gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens]
Length = 255
Score = 501 bits (1291), Expect = e-142
Identities = 255/264 (96%), Positives = 255/264 (96%), Gaps = 9/264 (3%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
Query: 61 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT 120
NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT
Sbjct: 52 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT 111
Query: 121 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV 180
INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
Sbjct: 112 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV 171
Query: 181 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK 240
ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
Sbjct: 172 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK 231
Query: 241 VSAGNGGSSLSYTNPAVAATSANL 264
VSAGNGGSSLSYTNPAVAATSANL
Sbjct: 232 VSAGNGGSSLSYTNPAVAATSANL 255
>gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens]
Length = 273
Score = 490 bits (1262), Expect = e-139
Identities = 255/282 (90%), Positives = 255/282 (90%), Gaps = 27/282 (9%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
Query: 61 NA------------------FNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK 102
NA FNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK
Sbjct: 52 NALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIK 111
Query: 103 FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG 162
FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG
Sbjct: 112 FRPGSVVVQLTLAFREGTINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSG 171
Query: 163 AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH 222
AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH
Sbjct: 172 AGVPGWGIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYH 231
Query: 223 THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 264
THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 232 THGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 273
>gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens]
Length = 203
Score = 290 bits (741), Expect = 1e-78
Identities = 165/264 (62%), Positives = 176/264 (66%), Gaps = 61/264 (23%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRS S
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRS----SVPS 47
Query: 61 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT 120
+ +++ P+T + + + F + +G F +
Sbjct: 48 STEKNAIPAPTTT--KSCRETFLKCFCRFINKGVFWASPILS------------------ 87
Query: 121 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV 180
SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV
Sbjct: 88 ----------------------------SVSDVPFPFSAQSGAGVPGWGIALLVLVCVLV 119
Query: 181 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK 240
ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK
Sbjct: 120 ALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEK 179
Query: 241 VSAGNGGSSLSYTNPAVAATSANL 264
VSAGNGGSSLSYTNPAVAATSANL
Sbjct: 180 VSAGNGGSSLSYTNPAVAATSANL 203
>gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens]
Length = 159
Score = 169 bits (427), Expect = 3e-42
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 61 NAFNSSLEDPSTDYYQELQRDISEM 85
NAFNSSLEDPSTDYYQELQRDISEM
Sbjct: 61 NAFNSSLEDPSTDYYQELQRDISEM 85
Score = 160 bits (406), Expect = 8e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 190 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 249
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 85 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 144
Query: 250 LSYTNPAVAATSANL 264
LSYTNPAVAATSANL
Sbjct: 145 LSYTNPAVAATSANL 159
>gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens]
Length = 150
Score = 160 bits (406), Expect = 8e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 190 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 249
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 76 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 135
Query: 250 LSYTNPAVAATSANL 264
LSYTNPAVAATSANL
Sbjct: 136 LSYTNPAVAATSANL 150
Score = 143 bits (361), Expect = 1e-34
Identities = 76/85 (89%), Positives = 76/85 (89%), Gaps = 9/85 (10%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
Query: 61 NAFNSSLEDPSTDYYQELQRDISEM 85
NAFNSSLEDPSTDYYQELQRDISEM
Sbjct: 52 NAFNSSLEDPSTDYYQELQRDISEM 76
>gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens]
Length = 158
Score = 97.8 bits (242), Expect = 8e-21
Identities = 53/62 (85%), Positives = 53/62 (85%), Gaps = 9/62 (14%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
Query: 61 NA 62
NA
Sbjct: 52 NA 53
>gi|239745235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 664
Score = 42.0 bits (97), Expect = 5e-04
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 37 SSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMFLQIYKQG--G 94
SSTPG T SV + AF+++L +P++ +Q L++ I +Y + G
Sbjct: 213 SSTPGPSHMTR-----SVTFTITNEAFSAALLNPASWKHQLLRKIIHHQLQPLYHEAFPG 267
Query: 95 FLGLSNIKFRPGSVVVQLTLAF 116
F G+ + FRPGSV V +L F
Sbjct: 268 FQGIGVLVFRPGSVAVNASLVF 289
>gi|239756347 PREDICTED: similar to taste receptor protein 1 [Homo
sapiens]
Length = 562
Score = 38.5 bits (88), Expect = 0.006
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 53 SVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMFLQIYKQG--GFLGLSNIKFRPGSVVV 110
SV + AF+++L +P++ +Q L++ I +Y + GF G+ + FRPGSV V
Sbjct: 4 SVTFTITNEAFSAALLNPASWKHQLLRKIIHHQLQPLYHEAFPGFQGIGVLVFRPGSVAV 63
Query: 111 QLTLAF 116
+L F
Sbjct: 64 NASLVF 69
>gi|239750872 PREDICTED: similar to taste receptor protein 1 [Homo
sapiens]
Length = 562
Score = 38.5 bits (88), Expect = 0.006
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 53 SVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMFLQIYKQG--GFLGLSNIKFRPGSVVV 110
SV + AF+++L +P++ +Q L++ I +Y + GF G+ + FRPGSV V
Sbjct: 4 SVTFTITNEAFSAALLNPASWKHQLLRKIIHHQLQPLYHEAFPGFQGIGVLVFRPGSVAV 63
Query: 111 QLTLAF 116
+L F
Sbjct: 64 NASLVF 69
>gi|6631090 interphotoreceptor matrix proteoglycan 1 [Homo sapiens]
Length = 797
Score = 33.9 bits (76), Expect = 0.15
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 62 AFNSSLEDPSTDYYQELQRDISEMFLQIYKQG--GFLGLSNIKFRPGSVVVQLTLAFREG 119
AF++ L + S+ Y+ L++ +++ + + GF L + FR GSV+V + F +
Sbjct: 585 AFSNDLFNKSSLEYRALEQQFTQLLVPYLRSNLTGFKQLEILNFRNGSVIVNSKMKFAKS 644
Query: 120 -----TINVHDVETQFNQYKTEAASRYNLTISDVSVSDVP 154
T VH V +++ AA + +L I S++ P
Sbjct: 645 VPYNLTKAVHGV---LEDFRSAAAQQLHLEIDSYSLNIEP 681
Score = 33.1 bits (74), Expect = 0.26
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 40 PGGEKETSAT----QRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMFLQIYKQ-GG 94
P E+ET QR + S F + L D + YYQEL +I+K+ G
Sbjct: 220 PTTERETEFAVLEEQRVELSVSLVNQKFKAELADSQSPYYQELAGKSQLQMQKIFKKLPG 279
Query: 95 FLGLSNIKFRP-------GSVVVQLTLAFREGTINVHDVET---QFNQYKTEAASRYNLT 144
F + + FRP S +QLT F+ + + F+ K E+ Y+ T
Sbjct: 280 FKKIHVLGFRPKKEKDGSSSTEMQLTAIFKRHSAEAKSPASDLLSFDSNKIESEEVYHGT 339
Query: 145 ISD 147
+ +
Sbjct: 340 MEE 342
>gi|89903008 neurofascin isoform 4 precursor [Homo sapiens]
Length = 1169
Score = 33.5 bits (75), Expect = 0.20
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 127 ETQFNQYKTEAASRYNLTIS--------DVSVSDVPFP-----FSAQSGAGVPGWGIALL 173
+T+F +T+ SRY T+S + + P P + Q+ GW I L
Sbjct: 985 QTKFTVQRTDPVSRYRFTLSARTQVGSGEAVTEESPAPPNEAYTNNQADIATQGWFIGL- 1043
Query: 174 VLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARD 210
+ A+A++ LI L VC +R G+ + +D
Sbjct: 1044 -----MCAIALLVLILLIVCFIKRSRGGKYPVREKKD 1075
>gi|115647981 glutamine and serine rich 1 [Homo sapiens]
Length = 1735
Score = 33.1 bits (74), Expect = 0.26
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 37 SSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFL 96
SS+P +K A Q SS SST +++ P Y E + D S+++ ++ GF
Sbjct: 507 SSSPQSQKFLPAVQSSSFASSTHCQTLQNNITSPDPKSYAERKLD-SDVYPSSKQEDGFP 565
Query: 97 GLSNIKFRPGSVVVQLTLAFREGTINVHDVETQFNQYK-TEAASRYNLTI 145
+P + + T +G IN Q + YK ++A RY+ ++
Sbjct: 566 MQELQVLQPQASLESSTQRLSDGEIN-----AQESTYKVSKADDRYSQSV 610
>gi|15042969 transmembrane protein 27 [Homo sapiens]
Length = 222
Score = 33.1 bits (74), Expect = 0.26
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 120 TINVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVL 179
T+ +V++ K + + L + +P + VP W I V+ C++
Sbjct: 95 TLPAVEVQSAIRMNKNRINNAFFLNDQTLEFLKIPSTLAPPMDPSVPIWIIIFGVIFCII 154
Query: 180 VALAIVYLIALAVCQCRRKNYGQLDIFPARD 210
+ +AI LI + Q RRKN ++ A D
Sbjct: 155 I-VAIALLILSGIWQRRRKNKEPSEVDDAED 184
>gi|237858679 neurofascin isoform 3 precursor [Homo sapiens]
Length = 1174
Score = 31.6 bits (70), Expect = 0.74
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 24/102 (23%)
Query: 127 ETQFNQYKTEAASRYNLTIS--------DVSVSDVPFP----------FSAQSGAGVPGW 168
+T+F +T+ SRY T+S + + P P + Q+ GW
Sbjct: 985 QTKFTVQRTDPVSRYRFTLSARTQVGSGEAVTEESPAPPNEATPTAAYTNNQADIATQGW 1044
Query: 169 GIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARD 210
I L + A+A++ LI L VC +R G+ + +D
Sbjct: 1045 FIGL------MCAIALLVLILLIVCFIKRSRGGKYPVREKKD 1080
>gi|237858677 neurofascin isoform 2 precursor [Homo sapiens]
Length = 1189
Score = 31.6 bits (70), Expect = 0.74
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 24/102 (23%)
Query: 127 ETQFNQYKTEAASRYNLTIS--------DVSVSDVPFP----------FSAQSGAGVPGW 168
+T+F +T+ SRY T+S + + P P + Q+ GW
Sbjct: 1000 QTKFTVQRTDPVSRYRFTLSARTQVGSGEAVTEESPAPPNEATPTAAYTNNQADIATQGW 1059
Query: 169 GIALLVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARD 210
I L + A+A++ LI L VC +R G+ + +D
Sbjct: 1060 FIGL------MCAIALLVLILLIVCFIKRSRGGKYPVREKKD 1095
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 31.6 bits (70), Expect = 0.74
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 7 SPFFLLLLLT-------VLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSST 58
SPFF LLT T AP PAT S +SS+ +S+ SS SS+
Sbjct: 52 SPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSS 110
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 31.6 bits (70), Expect = 0.74
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 7 SPFFLLLLLT-------VLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSST 58
SPFF LLT T AP PAT S +SS+ +S+ SS SS+
Sbjct: 52 SPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSS 110
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 16 TVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPST 72
TVLT TT TV TGS +TP +TS T S + ++T A S+ ST
Sbjct: 3920 TVLTTTTT----TVATGS---MATPSSSTQTSGTPPSLITTATTITATGSTTNPSST 3969
Score = 29.3 bits (64), Expect = 3.7
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 16 TVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPST 72
TVLT TT TV TGS +TP +TS T S ++T A S+ ST
Sbjct: 2106 TVLTTTTT----TVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSST 2155
Score = 29.3 bits (64), Expect = 3.7
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 16 TVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPST 72
TVLT TT TV TGS +TP +TS T S ++T A S+ ST
Sbjct: 2663 TVLTTTTT----TVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSST 2712
Score = 29.3 bits (64), Expect = 3.7
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 16 TVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPST 72
TVLT TT TV TGS +TP +TS T S ++T A S+ ST
Sbjct: 3363 TVLTTTTT----TVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSST 3412
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 4 GTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASST----------PGGEKETSATQRSS 53
GTQ+P ++ + T T T P P T TG +ST P E T T RS+
Sbjct: 1629 GTQTPT-MIPISTTTTVTPTPTPTTGSTGPPTHTSTAPIAELTTSNPPPESSTPQTSRST 1687
Query: 54 VPSSTEKNAFNSSL 67
TE S+L
Sbjct: 1688 SSPLTESTTLLSTL 1701
>gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens]
Length = 922
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 3 PGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 62
PG Q+P + + + A TAP PA V+ G A S+ + SS + +
Sbjct: 785 PGLQAPSTVAAVTPLPVAATAPSPAPVLPGFASAFSSNFNSALVAQAGLSSGLQAAGSSV 844
Query: 63 FNSSL---------EDPSTDYYQELQRD 81
F L ++PS QELQ +
Sbjct: 845 FPGLLSLPGIPGFPQNPSQSSLQELQHN 872
>gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens]
Length = 944
Score = 30.0 bits (66), Expect = 2.2
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 3 PGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 62
PG Q+P + + + A TAP PA V+ G A S+ + SS + +
Sbjct: 807 PGLQAPSTVAAVTPLPVAATAPSPAPVLPGFASAFSSNFNSALVAQAGLSSGLQAAGSSV 866
Query: 63 FNSSL---------EDPSTDYYQELQRD 81
F L ++PS QELQ +
Sbjct: 867 FPGLLSLPGIPGFPQNPSQSSLQELQHN 894
>gi|23592222 olfactory receptor, family 5, subfamily P, member 2
[Homo sapiens]
Length = 322
Score = 30.0 bits (66), Expect = 2.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 129 QFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPGWGIALLVLVCVLVALAIVYLI 188
Q N + + A L+ SD+SVS V FS+ G ++V VCV+ I LI
Sbjct: 169 QVNHFFCDFAPLLELSCSDISVSTVVLSFSS---------GSIIVVTVCVIAVCYIYILI 219
Query: 189 AL 190
+
Sbjct: 220 TI 221
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 29.6 bits (65), Expect = 2.8
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 17 VLTATTAPKP-ATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYY 75
V+T +P +T V+ SSTPG + TSAT S++ SS + P
Sbjct: 2218 VMTQIIRGQPVSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQ---------PPRPQQ 2268
Query: 76 QELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTL 114
+++ ++++ GG GL+ + G QL L
Sbjct: 2269 GQVKLTMAQLTQLTQGHGGNQGLTVVIQGQGQTTGQLQL 2307
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 29.6 bits (65), Expect = 2.8
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 17 VLTATTAPKP-ATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYY 75
V+T +P +T V+ SSTPG + TSAT S++ SS + P
Sbjct: 2092 VMTQIIRGQPVSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQ---------PPRPQQ 2142
Query: 76 QELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTL 114
+++ ++++ GG GL+ + G QL L
Sbjct: 2143 GQVKLTMAQLTQLTQGHGGNQGLTVVIQGQGQTTGQLQL 2181
>gi|239742580 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 897
Score = 28.9 bits (63), Expect = 4.8
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Query: 20 ATTAPKPATVVTGSGH-------------ASSTPGGEKETSA------TQRSSVPSSTEK 60
AT AP P+T+ SG AS+T + S +Q S S ++
Sbjct: 331 ATAAPPPSTLNNTSGSLLNAVDGGPSHFLASATAAARAQRSEVRYNQRSQTSRTRSCLKR 390
Query: 61 NAFNSSLEDPSTDYYQELQR 80
NA +SS ST+ QEL+R
Sbjct: 391 NASSSSSSHSSTEGLQELKR 410
>gi|98986457 host cell factor 1 [Homo sapiens]
Length = 2035
Score = 28.5 bits (62), Expect = 6.3
Identities = 35/156 (22%), Positives = 55/156 (35%), Gaps = 11/156 (7%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
+TP T S + V+ TT VTG+ S G TSA+ + + +
Sbjct: 857 VTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHSTSASLATPITTLGTI 916
Query: 61 NAFNSSLEDPSTDYYQELQRDISEMFLQIYKQGGFLGLSNIKFRPGSVVVQLTLAFREGT 120
+S + +P+ Q ++ G L I +P S Q+TL
Sbjct: 917 ATLSSQVINPTAITVSAAQTTLT--------AAGGLTTPTITMQPVSQPTQVTLITAPSG 968
Query: 121 IN---VHDVETQFNQYKTEAASRYNLTISDVSVSDV 153
+ VHD+ T +TI+D DV
Sbjct: 969 VEAQPVHDLPVSILASPTTEQPTATVTIADSGQGDV 1004
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 28.5 bits (62), Expect = 6.3
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 4 GTQSPFFLLLLLTVLTATTAPKPATVVT--GSGHASSTPGGEKETSAT-QRSSVPSSTEK 60
G +P + L +V T T P P T + +GHA+S P + +++T +S+P +
Sbjct: 3084 GQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATSLPVTDTSSASTGDTTSLPVTDTS 3143
Query: 61 NAFNSSLED-PSTD 73
+A+ P TD
Sbjct: 3144 SAYTGDTTSLPVTD 3157
>gi|4757836 BRCA1 associated protein-1 [Homo sapiens]
Length = 729
Score = 28.5 bits (62), Expect = 6.3
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 11 LLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDP 70
L + L++ T++ A PA V S TP E +A++ S AFNS L P
Sbjct: 459 LSIPLSIKTSSGAGSPAVAVPTHSQPSPTPSNESTDTASEIGS--------AFNSPLRSP 510
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 28.5 bits (62), Expect = 6.3
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 21 TTAPKPATVVT-GSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQEL 78
TT+P +T ++ G+ S+TP S T S+ +S++ + SS E P + L
Sbjct: 963 TTSPSTSTSISAGTTSTSTTPASTTPASTTPASTSTASSQASQEGSSPEPPPESHSSSL 1021
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,278,134
Number of Sequences: 37866
Number of extensions: 449370
Number of successful extensions: 2450
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2366
Number of HSP's gapped (non-prelim): 119
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.