Guide to the Human Genome
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Name: FAM179A Sequence: fasta or formatted (1019aa) NCBI GI: 145587088
Description:

hypothetical protein LOC165186

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         86           3
 C cysteine            1.6         16           1
 D aspartate           4.0         41           2
 E glutamate           6.3         64           5
 F phenylalanine       1.9         19           1
 G glycine             6.9         70           3
 H histidine           1.8         18           1
 I isoleucine          3.6         37           3
 K lysine              5.4         55           2
 L leucine            13.7        140           2
 M methionine          2.2         22           1
 N asparagine          3.1         32           2
 P proline             7.6         77           2
 Q glutamine           4.8         49           2
 R arginine            7.8         79           2
 S serine              8.7         89           2
 T threonine           4.6         47           2
 V valine              6.1         62           2
 W tryptophan          0.7          7           1
 Y tyrosine            0.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC165186 
FAM179B               0.156   hypothetical protein LOC23116 
JPH2                  0.012   junctophilin 2 isoform 1 
LOC100289242          0.009   PREDICTED: hypothetical protein XP_002342243 
MAP4                  0.009   microtubule-associated protein 4 isoform 5 
MAP4                  0.009   microtubule-associated protein 4 isoform 4 
MAP4                  0.009   microtubule-associated protein 4 isoform 2 
MAP4                  0.009   microtubule-associated protein 4 isoform 1 
C15orf52              0.009   hypothetical protein LOC388115 
PRG4                  0.009   proteoglycan 4 isoform D 
PRG4                  0.009   proteoglycan 4 isoform C 
PRG4                  0.009   proteoglycan 4 isoform B 
PRG4                  0.009   proteoglycan 4 isoform A 
ANKRD43               0.008   ankyrin repeat domain 43 
MAPK7                 0.008   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.008   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.008   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.008   mitogen-activated protein kinase 7 isoform 2 
BSN                   0.008   bassoon protein 
SRCAP                 0.008   Snf2-related CBP activator protein 
ZNF687                0.008   zinc finger protein 687 
APC2                  0.008   adenomatosis polyposis coli 2 
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent re...
PRR12                 0.008   proline rich 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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