Guide to the Human Genome
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Search of human proteins with 63079683

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]
         (873 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]             1751   0.0  
gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens]             1751   0.0  
gi|7662342 zinc fingers and homeoboxes 2 [Homo sapiens]               559   e-159
gi|28827782 zinc fingers and homeoboxes 3 [Homo sapiens]              503   e-142
gi|158631177 homeodomain leucine zipper protein [Homo sapiens]        110   7e-24
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          63   1e-09
gi|126090663 zinc finger homeodomain 4 [Homo sapiens]                  51   5e-06
gi|114431236 zinc finger protein 462 [Homo sapiens]                    48   3e-05
gi|11641283 LIM homeobox protein 5 [Homo sapiens]                      45   2e-04
gi|91982772 mucin 17 [Homo sapiens]                                    45   3e-04
gi|61969662 double homeobox A [Homo sapiens]                           45   3e-04
gi|239758038 PREDICTED: mucin 3A, cell surface associated, parti...    41   0.004
gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens]      41   0.006
gi|21361183 paired-like homeodomain transcription factor 2 isofo...    41   0.006
gi|42476164 POU class 2 homeobox 1 [Homo sapiens]                      40   0.007
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                  40   0.007
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                  40   0.007
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                  40   0.007
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                  40   0.007
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                   40   0.007
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]            40   0.007
gi|30410785 LIM homeobox protein 1 [Homo sapiens]                      40   0.007
gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens]             40   0.009
gi|30061565 La ribonucleoprotein domain family member 2 isoform ...    40   0.012
gi|30061569 La ribonucleoprotein domain family member 2 isoform ...    40   0.012
gi|30061567 La ribonucleoprotein domain family member 2 isoform ...    40   0.012
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  40   0.012
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  40   0.012
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]                40   0.012
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]       40   0.012

>gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]
          Length = 873

 Score = 1751 bits (4534), Expect = 0.0
 Identities = 873/873 (100%), Positives = 873/873 (100%)

Query: 1   MASRRKSTTPCMVLASEQDPDLELISDLDEGPPVLTPVENTRAESISSDEEVHESVDSDN 60
           MASRRKSTTPCMVLASEQDPDLELISDLDEGPPVLTPVENTRAESISSDEEVHESVDSDN
Sbjct: 1   MASRRKSTTPCMVLASEQDPDLELISDLDEGPPVLTPVENTRAESISSDEEVHESVDSDN 60

Query: 61  QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 120
           QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH
Sbjct: 61  QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 120

Query: 121 NLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEVSSSGISISK 180
           NLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEVSSSGISISK
Sbjct: 121 NLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEVSSSGISISK 180

Query: 181 TPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVENPSSSASESNTSTSIVN 240
           TPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVENPSSSASESNTSTSIVN
Sbjct: 181 TPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVENPSSSASESNTSTSIVN 240

Query: 241 RIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNSIPTYNAALDNNPLLL 300
           RIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNSIPTYNAALDNNPLLL
Sbjct: 241 RIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNSIPTYNAALDNNPLLL 300

Query: 301 NTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEEARRKQFNGTV 360
           NTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEEARRKQFNGTV
Sbjct: 301 NTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEEARRKQFNGTV 360

Query: 361 HTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGV 420
           HTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGV
Sbjct: 361 HTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGV 420

Query: 421 PSQNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELK 480
           PSQNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELK
Sbjct: 421 PSQNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELK 480

Query: 481 VSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIII 540
           VSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIII
Sbjct: 481 VSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIII 540

Query: 541 DSSDETTESPTVGTAQPKQSWNPFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNR 600
           DSSDETTESPTVGTAQPKQSWNPFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNR
Sbjct: 541 DSSDETTESPTVGTAQPKQSWNPFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNR 600

Query: 601 LRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAGSSKEEAGETSPADESGAPKSGS 660
           LRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAGSSKEEAGETSPADESGAPKSGS
Sbjct: 601 LRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAGSSKEEAGETSPADESGAPKSGS 660

Query: 661 TGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 720
           TGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL
Sbjct: 661 TGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 720

Query: 721 KWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKT 780
           KWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKT
Sbjct: 721 KWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKT 780

Query: 781 GTAILKDYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAERQRRSELGIELFEENEEEDE 840
           GTAILKDYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAERQRRSELGIELFEENEEEDE
Sbjct: 781 GTAILKDYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAERQRRSELGIELFEENEEEDE 840

Query: 841 VIDDQEEDEEETDDSDTWEPPRHVKRKLSKSDD 873
           VIDDQEEDEEETDDSDTWEPPRHVKRKLSKSDD
Sbjct: 841 VIDDQEEDEEETDDSDTWEPPRHVKRKLSKSDD 873


>gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens]
          Length = 873

 Score = 1751 bits (4534), Expect = 0.0
 Identities = 873/873 (100%), Positives = 873/873 (100%)

Query: 1   MASRRKSTTPCMVLASEQDPDLELISDLDEGPPVLTPVENTRAESISSDEEVHESVDSDN 60
           MASRRKSTTPCMVLASEQDPDLELISDLDEGPPVLTPVENTRAESISSDEEVHESVDSDN
Sbjct: 1   MASRRKSTTPCMVLASEQDPDLELISDLDEGPPVLTPVENTRAESISSDEEVHESVDSDN 60

Query: 61  QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 120
           QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH
Sbjct: 61  QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 120

Query: 121 NLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEVSSSGISISK 180
           NLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEVSSSGISISK
Sbjct: 121 NLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEVSSSGISISK 180

Query: 181 TPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVENPSSSASESNTSTSIVN 240
           TPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVENPSSSASESNTSTSIVN
Sbjct: 181 TPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVENPSSSASESNTSTSIVN 240

Query: 241 RIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNSIPTYNAALDNNPLLL 300
           RIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNSIPTYNAALDNNPLLL
Sbjct: 241 RIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNSIPTYNAALDNNPLLL 300

Query: 301 NTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEEARRKQFNGTV 360
           NTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEEARRKQFNGTV
Sbjct: 301 NTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEEARRKQFNGTV 360

Query: 361 HTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGV 420
           HTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGV
Sbjct: 361 HTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGV 420

Query: 421 PSQNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELK 480
           PSQNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELK
Sbjct: 421 PSQNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELK 480

Query: 481 VSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIII 540
           VSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIII
Sbjct: 481 VSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIII 540

Query: 541 DSSDETTESPTVGTAQPKQSWNPFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNR 600
           DSSDETTESPTVGTAQPKQSWNPFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNR
Sbjct: 541 DSSDETTESPTVGTAQPKQSWNPFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNR 600

Query: 601 LRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAGSSKEEAGETSPADESGAPKSGS 660
           LRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAGSSKEEAGETSPADESGAPKSGS
Sbjct: 601 LRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAGSSKEEAGETSPADESGAPKSGS 660

Query: 661 TGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 720
           TGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL
Sbjct: 661 TGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 720

Query: 721 KWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKT 780
           KWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKT
Sbjct: 721 KWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKT 780

Query: 781 GTAILKDYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAERQRRSELGIELFEENEEEDE 840
           GTAILKDYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAERQRRSELGIELFEENEEEDE
Sbjct: 781 GTAILKDYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAERQRRSELGIELFEENEEEDE 840

Query: 841 VIDDQEEDEEETDDSDTWEPPRHVKRKLSKSDD 873
           VIDDQEEDEEETDDSDTWEPPRHVKRKLSKSDD
Sbjct: 841 VIDDQEEDEEETDDSDTWEPPRHVKRKLSKSDD 873


>gi|7662342 zinc fingers and homeoboxes 2 [Homo sapiens]
          Length = 837

 Score =  559 bits (1441), Expect = e-159
 Identities = 347/889 (39%), Positives = 492/889 (55%), Gaps = 109/889 (12%)

Query: 1   MASRRKSTTPCMVLAS---EQDPDLELISDLDEG-----PPVLTPVENTRAESISSDEEV 52
           MAS+RKSTTPCMV  S   EQD   E+    ++G     P V         E+ S + EV
Sbjct: 1   MASKRKSTTPCMVRTSQVVEQDVPEEVDRAKEKGIGTPQPDVAKDSWAAELENSSKENEV 60

Query: 53  HESVDSDNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 112
            E       Q+KK++GGYECKYC + T +LN FT HVD +HPNV+LN  YVC ECNF TK
Sbjct: 61  IEVKSMGESQSKKLQGGYECKYCPYSTQNLNEFTEHVDMQHPNVILNPLYVCAECNFTTK 120

Query: 113 RYDALSEHNLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEVS 172
           +YD+LS+HN K+HPGE NFKL ++KRNNQT+ EQ+I       S            T  S
Sbjct: 121 KYDSLSDHNSKFHPGEANFKLKLIKRNNQTVLEQSIETTNHVVSI-----TTSGPGTGDS 175

Query: 173 SSGISISKTPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVENPSSSASES 232
            SGIS+SKTPIMK  K K + K++            +K  EI P      EN     +  
Sbjct: 176 DSGISVSKTPIMKPGKPKADAKKV-----------PKKPEEITP------ENHVEGTARL 218

Query: 233 NTSTSIVNRIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNSIPTYNAA 292
            T T+ +        S +     +   L  V+ +V    N NL+PKV +P+N+   YN+A
Sbjct: 219 VTDTAEI-------LSRLGGVELLQDTLGHVMPSVQLPPNINLVPKVPVPLNT-TKYNSA 270

Query: 293 LDNNPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEEAR 352
           LD N  ++N++NKFPYPT +E++ L+A +K+ EE I+IWF+ QRLKHG+SW+PEEVEEAR
Sbjct: 271 LDTNATMINSFNKFPYPTQAELSWLTAASKHPEEHIRIWFATQRLKHGISWSPEEVEEAR 330

Query: 353 RKQFNGTVHTVPQTITVIPTHISTGSNGLPSILQT---CQIVGQPGLVLTQVAGTNTLPV 409
           +K FNGT+ +VP TITV+P  ++      P ILQT   CQI+GQ  LVLTQV   +T   
Sbjct: 331 KKMFNGTIQSVPPTITVLPAQLAPTKVTQP-ILQTALPCQILGQTSLVLTQVTSGSTTVS 389

Query: 410 TAPIALTVAGVPSQNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNPDSFGIRA 469
            +PI L VAGV +    +    P A P  + +P  A VP     K     + P S     
Sbjct: 390 CSPITLAVAGVTNHGQKRPLVTPQAAPEPK-RPHIAQVP-EPPPKVANPPLTPAS---DR 444

Query: 470 KKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLH 529
           KKTKEQ+A LK S+L++QFP D+E+ RL+++TGL + EIKKWFSD RY  +       +H
Sbjct: 445 KKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG----IVH 500

Query: 530 LNNDSSTTIIIDSSDETTESPTVGTAQPKQSWNPFPDFTPQKFKEKTAEQLRVLQASFLN 589
           + ++S             +   +  ++  ++++ +PDF PQKFKEKT  Q+++L+ SFL 
Sbjct: 501 ITSESL----------AKDQLAIAASRHGRTYHAYPDFAPQKFKEKTQGQVKILEDSFLK 550

Query: 590 SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAGSSKEEAGETSP 649
           SS  T  EL+RLR +TKL+RREID+WF+E++K +   E+ + +D   +G   ++ G  + 
Sbjct: 551 SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV-LDSMGSGKKGQDVGAPNG 609

Query: 650 A-----DESGAPKSG---STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLAR 701
           A       SGA  +    S      K+ EQ+H+L+S F RTQWP+P+EYD+LA ++GL R
Sbjct: 610 ALSRLDQLSGAQLTSSLPSPSPAIAKSQEQVHLLRSTFARTQWPTPQEYDQLAAKTGLVR 669

Query: 702 TDIVSWFGDTRYAWKNGNLKWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPR 761
           T+IV WF + R   K G +KW   YQ    +  +G  ++ ++                  
Sbjct: 670 TEIVRWFKENRCLLKTGTVKWMEQYQHQPMADDHGYDAVARKA----------------- 712

Query: 762 GSKRINNWDRGPSLIKFKTGTAILKDYYLKHKFLNEQDLDELVNKSHMGYEQVR------ 815
                      P     K G  ++  YY   K L E+DL++LV +  +G E  +      
Sbjct: 713 ---------TKPMAESPKNGGDVVPQYYKDPKKLCEEDLEKLVTRVKVGSEPAKDCLPAK 763

Query: 816 --EWFAERQRRSELGIELFEENEEEDEVIDDQE----EDEEETDDSDTW 858
             E  ++R   S    +  +EN EE  V+D  E    E++  +D SD+W
Sbjct: 764 PSEATSDRSEGSSRDGQGSDEN-EESSVVDYVEVTVGEEDAISDRSDSW 811


>gi|28827782 zinc fingers and homeoboxes 3 [Homo sapiens]
          Length = 956

 Score =  503 bits (1294), Expect = e-142
 Identities = 339/995 (34%), Positives = 496/995 (49%), Gaps = 198/995 (19%)

Query: 1   MASRRKSTTPCMVLASE---QDPDLEL--ISDLDEGPPVLTPVENTRAESISSDEEVHES 55
           MAS+RKSTTPCM+       QD  +E      L EGP    P E + A S ++      S
Sbjct: 1   MASKRKSTTPCMIPVKTVVLQDASMEAQPAETLPEGPQQDLPPEASAASSEAAQNP--SS 58

Query: 56  VDSD---NQQNKKVEGG-YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 111
            D     N     ++G  Y CKYC F++ D+  F  H++SEH +   + ++VC  C+FL 
Sbjct: 59  TDGSTLANGHRSTLDGYLYSCKYCDFRSHDMTQFVGHMNSEHTDFNKDPTFVCSGCSFLA 118

Query: 112 KRYDALSEHNLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEV 171
           K  + LS HN   H GE +F   + K +N  + EQ+I + T       E +AE A+    
Sbjct: 119 KTPEGLSLHNATCHSGEASFVWNVAKPDNHVVVEQSIPESTSTPDLAGEPSAEGADG--- 175

Query: 172 SSSGISISKTPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDRE----EIVENPSS 227
             + I I+KTPIMK+MK K E K+I   H   E+VP +   E  P       E+ E   S
Sbjct: 176 -QAEIIITKTPIMKIMKGKAEAKKI---HTLKENVPSQPVGEALPKLSTGEMEVREGDHS 231

Query: 228 ----SASESNTSTSIVNRIHPSTASTVVTPAAVLPGLAQVITA-----VSAQQN------ 272
               +   S  S S     H +    + T   +  G+AQ ++      V AQ +      
Sbjct: 232 FINGAVPVSQASASSAKNPHAANGPLIGTVPVLPAGIAQFLSLQQQPPVHAQHHVHQPLP 291

Query: 273 -SNLIPKVLIPVNSIPTYNAALDNNPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKIW 331
            +  +PKV+IP++SIPTYNAA+D+N  L N+++KFPYPT +E+  L+   KY EEQ+KIW
Sbjct: 292 TAKALPKVMIPLSSIPTYNAAMDSNSFLKNSFHKFPYPTKAELCYLTVVTKYPEEQLKIW 351

Query: 332 FSAQRLKHGVSWTPEEVEEARRKQFNGTVHTVPQ-TITVIPTHISTGSNGLPSILQTC-- 388
           F+AQRLK G+SW+PEE+E+AR+K FN  + +VPQ TITV+ T +   +  +  ++Q    
Sbjct: 352 FTAQRLKQGISWSPEEIEDARKKMFNTVIQSVPQPTITVLNTPLVASAGNVQHLIQAALP 411

Query: 389 -QIVGQP-----GLVLTQVAGTNTLPVTA-PIALTVAGVPSQNNIQKSQVPAAQPTAETK 441
             +VGQP     GL++TQ    N L  T+ P+ LTV  VP Q  +       +  T+  K
Sbjct: 412 GHVVGQPEGTGGGLLVTQPLMANGLQATSSPLPLTVTSVPKQPGVAPINTVCSNTTSAVK 471

Query: 442 PATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT 501
              AA     +    T+    D+   + KK+ EQL+ LK S+ +NQFP  SE+  L K+T
Sbjct: 472 VVNAAQSLLTACPSITSQAFLDASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT 531

Query: 502 GLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIIIDSSDETTESP----------- 550
           GL+  E++KWFSD RY+ RN K ++ +   + SS  IIIDS  E + SP           
Sbjct: 532 GLSTREVRKWFSDRRYHCRNLKGSRAMIPGDHSS--IIIDSVPEVSFSPSSKVPEVTCIP 589

Query: 551 ---TVGT--AQPKQSWNPFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQT 605
              T+ T  +  +QSW+  PDFTP K+KE+  EQLR L++SF  + +  DEEL+RLR++T
Sbjct: 590 TTATLATHPSAKRQSWHQTPDFTPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSET 649

Query: 606 KLTRREIDAWFTEKKKS-------KALKEEKMEIDES--NAGSSKEEAGETSPADESGA- 655
           K+TRREID+WF+E++K        KA +    E +E+  + G  ++ A E   + E+G+ 
Sbjct: 650 KMTRREIDSWFSERRKKVNAEETKKAEENASQEEEEAAEDEGGEEDLASELRVSGENGSL 709

Query: 656 -----------------------------------------PKSGSTGKI---------C 665
                                                    P+   + K+         C
Sbjct: 710 EMPSSHILAERKVSPIKINLKNLRVTEANGRNEIPGLGACDPEDDESNKLAEQLPGKVSC 769

Query: 666 KKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYY 725
           KKT +Q H+L+  FV+TQWPS ++YD +  ++GL R ++V WFGD+RYA KNG LKWY  
Sbjct: 770 KKTAQQRHLLRQLFVQTQWPSNQDYDSIMAQTGLPRPEVVRWFGDSRYALKNGQLKWYED 829

Query: 726 YQSANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKTGTA-I 784
           Y+  N                                          P L+    G   +
Sbjct: 830 YKRGNFP----------------------------------------PGLLVIAPGNREL 849

Query: 785 LKDYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAERQRRSELGIELFEENEEEDEVIDD 844
           L+DYY+ HK L E+DL  L +K+ M  +QV++WFAE+              EE   V D 
Sbjct: 850 LQDYYMTHKMLYEEDLQNLCDKTQMSSQQVKQWFAEKM------------GEETRAVADT 897

Query: 845 QEEDE-------------------EETDDSDTWEP 860
             ED+                   E +++S++WEP
Sbjct: 898 GSEDQGPGTGELTAVHKGMGDTYSEVSENSESWEP 932


>gi|158631177 homeodomain leucine zipper protein [Homo sapiens]
          Length = 550

 Score =  110 bits (274), Expect = 7e-24
 Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 22/199 (11%)

Query: 663 KICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 722
           K  +KT EQL +LKS F++ QW   E+Y KL + +GL R +I+ WFGDTRYA K+G LKW
Sbjct: 359 KTKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 418

Query: 723 YYYYQSANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKTGT 782
           +        +++ G  S +      P           P  ++ +N     P L       
Sbjct: 419 F------RDNAVPGAPSFQDPAIPTP-----------PPSTRSLNERAETPPLPIPPPPP 461

Query: 783 AI--LKDYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAER-QRRSELGIELFEENEEED 839
            I  L+ Y+  H+ L E D+ +L   S +  +QV +WF  R  + +E+ + L EE EEE+
Sbjct: 462 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQPAEVVVCLDEEEEEEE 521

Query: 840 EVI--DDQEEDEEETDDSD 856
           E +  DD+EE+EEE +D D
Sbjct: 522 EELPEDDEEEEEEEEEDDD 540



 Score = 66.2 bits (160), Expect = 1e-10
 Identities = 28/62 (45%), Positives = 44/62 (70%)

Query: 293 LDNNPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEEAR 352
           LD+N  LL T++ FPYP++++I +L  +     E++K WF AQRL+ G+SW+ EE+EE R
Sbjct: 64  LDSNEHLLKTFSYFPYPSLADIALLCLRYGLQMEKVKTWFMAQRLRCGISWSSEEIEETR 123

Query: 353 RK 354
            +
Sbjct: 124 AR 125



 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 28/237 (11%)

Query: 433 AAQPTAETKPATAAVPTSQSVKHE--------TALVNPDSFGIRA--KKTKEQLAELKVS 482
           +  P+ +  P        Q ++H         T  ++PD    R   +KTKEQLA LK  
Sbjct: 315 SVSPSEQALPPHLEPAWPQGLRHNSVPGRVGPTEYLSPDMQRQRKTKRKTKEQLAILKSF 374

Query: 483 YLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIIIDS 542
           +L+ Q+    +  +L +ITGL + EI +WF DTRY  ++ +    L    D++       
Sbjct: 375 FLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ----LKWFRDNAVPGAPSF 430

Query: 543 SDET--TESPTVGTAQPKQSWNPFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNR 600
            D    T  P+  +   +    P P   P          ++ L+  +     L + ++ +
Sbjct: 431 QDPAIPTPPPSTRSLNERAETPPLPIPPP-------PPDIQPLERYWAAHQQLRETDIPQ 483

Query: 601 LRAQTKLTRREIDAWFTEKKKSKA-----LKEEKMEIDESNAGSSKEEAGETSPADE 652
           L   ++L+ +++  WF  +    A     L EE+ E +E      +EE  E    D+
Sbjct: 484 LSQASRLSTQQVLDWFDSRLPQPAEVVVCLDEEEEEEEEELPEDDEEEEEEEEEDDD 540


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 63.2 bits (152), Expect = 1e-09
 Identities = 73/288 (25%), Positives = 118/288 (40%), Gaps = 26/288 (9%)

Query: 382  PSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGVPSQNNIQKSQVPAAQPTAETK 441
            P I        QP + LTQ++    LP+ +P+ +    +P Q     +Q+P      E  
Sbjct: 2069 PPITSPTIAPAQPSVPLTQLSMPMELPIFSPLMMQT--MPLQT--LPAQLPPQLGPVEPL 2124

Query: 442  PATAAVPTSQSVKHET--ALVNPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMK 499
            PA  A    Q  +H+    L+   +   R + T +QL  L+  +  N  P + +I  +  
Sbjct: 2125 PADLA----QLYQHQLNPTLLQQQNKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMAD 2180

Query: 500  ITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIIIDSSDETTESPTVGTAQPKQ 559
             +GL +  IK WF +T + +R    +   + +N   T++     D    SP      PKQ
Sbjct: 2181 KSGLPQKVIKHWFRNTLFKERQRNKDSPYNFSNPPITSLEELKIDSRPPSP----EPPKQ 2236

Query: 560  SWNPFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEK 619
             +      +  +F   T  QLRVLQ  F  ++   D+E  +L     L  R I  WF + 
Sbjct: 2237 EYWGSKRSSRTRF---TDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWF-QN 2292

Query: 620  KKSKALKEEKMEIDESNAGSSKEEAGETSPADESGAPKSGSTGKICKK 667
             + KA K      +  N G  K+  GE          ++ +    CKK
Sbjct: 2293 ARQKARK------NYENQGEGKD--GERRELTNDRYIRTSNLNYQCKK 2332



 Score = 40.4 bits (93), Expect = 0.007
 Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 668  TPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQ 727
            T +QL +L+  F     PS E+  ++A +SGL +  I  WF +T +  +  N    Y + 
Sbjct: 2153 TDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQRNKDSPYNFS 2212

Query: 728  SANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKT-GTAILK 786
            +   +S+  L    +     P       P+    GSKR        S  +F      +L+
Sbjct: 2213 NPPITSLEELKIDSRPPSPEP-------PKQEYWGSKR-------SSRTRFTDYQLRVLQ 2258

Query: 787  DYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAERQRRSELGIELFEENE--EEDEVIDD 844
            D++  + +  + + ++L N  ++    +  WF   ++++    E   E +  E  E+ +D
Sbjct: 2259 DFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKNYENQGEGKDGERRELTND 2318

Query: 845  Q 845
            +
Sbjct: 2319 R 2319



 Score = 35.0 bits (79), Expect = 0.30
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 642  EEAGETSPADESGAPKSGSTGKICKK--------TPEQLHMLKSAFVRTQWPSPEEYDKL 693
            EE    SP +      SG+ G+  ++        TPEQL +L   ++    P+ +  D +
Sbjct: 2619 EEKASASPGEND----SGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHI 2674

Query: 694  AKESGLARTDIVSWFGDTRYAWKNGNLK 721
            A E GL +  +  WF +TR   + G  +
Sbjct: 2675 AHEVGLKKRVVQVWFQNTRARERKGQFR 2702



 Score = 33.5 bits (75), Expect = 0.88
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 430  QVPAAQPTAETKPATAAVPTSQSVKHETALVNPDSFG-------------IRAKKTKEQL 476
            Q+PA+  T+ + P T+ + T +    E A  +P                 +R   T EQL
Sbjct: 2595 QIPASSATSPSTP-TSTMNTLKRKLEEKASASPGENDSGTGGEEPQRDKRLRTTITPEQL 2653

Query: 477  AELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 523
              L   YL +  P    +  +    GL K  ++ WF +TR  +R  +
Sbjct: 2654 EILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKGQ 2700



 Score = 33.5 bits (75), Expect = 0.88
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 639  SSKEEAGETSPADESGAPKSGSTGKI-------CKKTPEQLHMLKSAFVRTQWPSPEEYD 691
            SS  +    SP     A KSG +G          + T  QL +LKS F   + P+  E +
Sbjct: 2918 SSLADPCSPSPGASGSAGKSGDSGDRPGQKRFRTQMTNLQLKVLKSCFNDYRTPTMLECE 2977

Query: 692  KLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSANSSSMNG 736
             L  + GL +  +  WF + R   K   L    ++   N +S  G
Sbjct: 2978 VLGNDIGLPKRVVQVWFQNARAKEKKSKLSMAKHF-GINQTSYEG 3021



 Score = 31.6 bits (70), Expect = 3.4
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 818 FAERQRRSELGIELFEENEEEDEVIDDQEEDEEETDD 854
           F+E+   +E   E  EE EE +E  +++EE+EEE +D
Sbjct: 452 FSEKVEPAEEEAEEEEEEEEAEEEEEEEEEEEEEEED 488



 Score = 31.2 bits (69), Expect = 4.4
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 36   TPVENTRAESISSDEEVHESVDSDNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 93
            +P  + R     S E    S      +  K E  Y+C YC +   D+N    H  ++H
Sbjct: 1189 SPATSKRISFPGSSESPLSSKRPKTAEEIKPEQMYQCPYCKYSNADVNRLRVHAMTQH 1246


>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
          Length = 3571

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 468  RAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 527
            R + T +QL  L+  +  N  P + +I  + + +GL++  IK WF +T + +R    +  
Sbjct: 2088 RTRITDDQLKILRAYFDINNSPSEEQIQEMAEKSGLSQKVIKHWFRNTLFKERQRNKDSP 2147

Query: 528  LHLNNDSSTT---IIIDSSDETTES-PTVGTAQPKQSWNPFPDFTPQKFKEKTAEQLRVL 583
             + +N   T    I ID    + E   +  +   + S   F D+           QLRVL
Sbjct: 2148 YNFSNPPITVLEDIRIDPQPTSLEHYKSDASFSKRSSRTRFTDY-----------QLRVL 2196

Query: 584  QASFLNSSVLTDEELNRLRAQTKLTRREIDAWF-TEKKKSKALKEEKMEIDES 635
            Q  F  ++   D+E+ +L     L  R I  WF   ++K++   E + E  ++
Sbjct: 2197 QDFFDTNAYPKDDEIEQLSTVLNLPTRVIVVWFQNARQKARKSYENQAETKDN 2249



 Score = 39.7 bits (91), Expect = 0.012
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 629  KMEIDESNAGSSKEEAGETSPADESGAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPE 688
            K ++D+    +  E+ G  S  D+    +  +T      TPEQL +L   ++    P+ +
Sbjct: 2534 KRKLDDKEDNNCSEKEGGNSGEDQHRDKRLRTT-----ITPEQLEILYEKYLLDSNPTRK 2588

Query: 689  EYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 721
              D +A+E GL +  +  WF +TR   + G  +
Sbjct: 2589 MLDHIAREVGLKKRVVQVWFQNTRARERKGQFR 2621



 Score = 37.7 bits (86), Expect = 0.047
 Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 22/129 (17%)

Query: 522  SKSNQCLHLNN-----DSSTTIIIDSSDETTESPTVGTAQPKQSWNPFPDFTPQKFKEKT 576
            S ++  +H N+     D S  I  D  D    S T   A P  S NPF    P K K   
Sbjct: 2822 SLTSPSIHFNDKDGDHDQSFYITDDPDDNADRSETSSIADPS-SPNPFGSSNPFKSKSND 2880

Query: 577  AE------------QLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKA 624
                          QL+VL+A F +    T +E   L  +  L +R +  WF    ++  
Sbjct: 2881 RPGHKRFRTQMSNLQLKVLKACFSDYRTPTMQECEMLGNEIGLPKRVVQVWF----QNAR 2936

Query: 625  LKEEKMEID 633
             KE+K +I+
Sbjct: 2937 AKEKKFKIN 2945



 Score = 37.0 bits (84), Expect = 0.080
 Identities = 24/86 (27%), Positives = 37/86 (43%)

Query: 448  PTSQSVKHETALVNPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGE 507
            P   S++H  +  +      R + T  QL  L+  +  N +P D EI +L  +  L    
Sbjct: 2165 PQPTSLEHYKSDASFSKRSSRTRFTDYQLRVLQDFFDTNAYPKDDEIEQLSTVLNLPTRV 2224

Query: 508  IKKWFSDTRYNQRNSKSNQCLHLNND 533
            I  WF + R   R S  NQ    +N+
Sbjct: 2225 IVVWFQNARQKARKSYENQAETKDNE 2250



 Score = 35.4 bits (80), Expect = 0.23
 Identities = 32/174 (18%), Positives = 76/174 (43%), Gaps = 15/174 (8%)

Query: 668  TPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQ 727
            T +QL +L++ F     PS E+  ++A++SGL++  I  WF +T +  +  N    Y + 
Sbjct: 2092 TDDQLKILRAYFDINNSPSEEQIQEMAEKSGLSQKVIKHWFRNTLFKERQRNKDSPYNFS 2151

Query: 728  SANSSSMNGLSSLRKRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKT-GTAILK 786
            +   + +  +       R  P+       +     SKR        S  +F      +L+
Sbjct: 2152 NPPITVLEDI-------RIDPQPTSLEHYKSDASFSKR-------SSRTRFTDYQLRVLQ 2197

Query: 787  DYYLKHKFLNEQDLDELVNKSHMGYEQVREWFAERQRRSELGIELFEENEEEDE 840
            D++  + +  + ++++L    ++    +  WF   ++++    E   E ++ ++
Sbjct: 2198 DFFDTNAYPKDDEIEQLSTVLNLPTRVIVVWFQNARQKARKSYENQAETKDNEK 2251



 Score = 31.6 bits (70), Expect = 3.4
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 467  IRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 523
            +R   T EQL  L   YL +  P    +  + +  GL K  ++ WF +TR  +R  +
Sbjct: 2563 LRTTITPEQLEILYEKYLLDSNPTRKMLDHIAREVGLKKRVVQVWFQNTRARERKGQ 2619



 Score = 30.0 bits (66), Expect = 9.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 46   ISSDEEVHESVDSDNQQNKKV-EGGYECKYCTFQTPDLNMFTFHVDSEH 93
            ++ +E+V        + NK   E  Y+C YC + + D +    HV S+H
Sbjct: 1147 LAKEEDVATKRSKPTEDNKFCHEQFYQCPYCNYNSRDQSRIQMHVLSQH 1195


>gi|114431236 zinc finger protein 462 [Homo sapiens]
          Length = 2506

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 26/188 (13%)

Query: 37   PVENTRAESISSDEEVHESVDSDNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV 96
            P  +   + + S E  H ++    +++K     Y C+YC+F +   +    H+ + H + 
Sbjct: 1997 PAVSAAVKGLRSHERSHLALAMFTREDK-----YSCQYCSFVSAFRHNLDRHMQTHHGH- 2050

Query: 97   VLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDG- 155
              +  + C  C+F +     L  H LK H GE  +K +    +  TI +   + L   G 
Sbjct: 2051 --HKPFRCKLCSFKSSYNSRLKTHILKAHAGEHAYKCSWCSFSTMTISQLKEHSLKVHGK 2108

Query: 156  ----------------SFVKEENAEQAESTEVSSSGISISKTPIMKMMKNKVENKRIAVH 199
                            S    + A  AE  E  S+  S S+ P ++   N  ++  +A +
Sbjct: 2109 ALTLPRPRIVSLLSSHSHHSSQKATPAEEVE-DSNDSSYSEPPDVQQQLNHYQSAALARN 2167

Query: 200  HNSVEDVP 207
            ++ V  VP
Sbjct: 2168 NSRVSPVP 2175



 Score = 35.4 bits (80), Expect = 0.23
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 53  HESVDSDNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYV--------- 103
           H S ++D   + ++   Y CK+C F        + H    HP +  +  Y+         
Sbjct: 829 HNSENTDFGDSGRL---YYCKHCDFNNKSARSVSTHYQRMHPYIKFSFRYILDPNDHSAV 885

Query: 104 --CVECNFLTKRYDALSEHNLKYHPGEEN 130
             C+EC      ++ L +H  ++HP   N
Sbjct: 886 YRCLECYIDYTNFEDLQQHYGEHHPEAMN 914



 Score = 33.9 bits (76), Expect = 0.68
 Identities = 42/200 (21%), Positives = 73/200 (36%), Gaps = 21/200 (10%)

Query: 70   YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEE 129
            + C  CTF          H++  +        Y C  C + TK  + L  H    H    
Sbjct: 2300 FRCDKCTFTCSSDESLQQHIEKHNEL----KPYKCQLCYYETKHTEELDSHLRDEHKVSR 2355

Query: 130  NFKLT-MVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEV---SSSGISIS---KTP 182
            NF+L   V  +     ++ +   + D    +EE   +AE  E+   S  G +++   + P
Sbjct: 2356 NFELVGRVNLDQLEQMKEKMESSSSDDEDKEEEMNSKAEDRELMRFSDHGAALNTEKRFP 2415

Query: 183  I----MKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVEN----PSSSASESNT 234
                     +     + +  H  ++ D  +    EI P  +EI+EN    PS    E + 
Sbjct: 2416 CEFCGRAFSQGSEWERHVLRHGMALNDTKQVSREEIHP--KEIMENSVKMPSIEEKEDDE 2473

Query: 235  STSIVNRIHPSTASTVVTPA 254
            +  I   +   T +  V  A
Sbjct: 2474 AIGIDFSLKNETVAICVVTA 2493



 Score = 32.3 bits (72), Expect = 2.0
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 29/104 (27%)

Query: 66   VEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYV---------------------- 103
            +E GY C++C +   + N    H    HP   ++ +Y+                      
Sbjct: 1308 IEAGYHCEWCIYSHTEPNGLLLHYQRRHPEHYVDYTYMATKLWAGPDPSPPSLTMPAEAK 1367

Query: 104  ---CVECNFLTKRYDALSEHNLKYHP----GEENFKLTMVKRNN 140
               C +C F       ++ H   +HP    G+E+  L ++K  +
Sbjct: 1368 TYRCRDCVFEAVSIWDITNHYQAFHPWAMNGDESVLLDIIKEKD 1411



 Score = 32.0 bits (71), Expect = 2.6
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 70  YECKYCTFQTPDLNMFTFHVDSEHPNVVLN-----SSYVCVECNFLTKRYDALSE 119
           Y C++C++ +P++     H    HP V +N     SSYV  +   L      L E
Sbjct: 925 YRCRFCSYTSPNVRSLMPHYQRMHPTVKINNAMIFSSYVVEQQEGLNTESQTLRE 979



 Score = 31.6 bits (70), Expect = 3.4
 Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 30/182 (16%)

Query: 70   YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-------------YVCVECNFLTKRYDA 116
            Y+C  C  +  +L+    H   +HP + + ++             Y C  C ++  R   
Sbjct: 1470 YQCTVCQSEYNNLHGLLTHYGKKHPGMKVKAADFAQDIDINPGAVYKCRHCPYINTRIHG 1529

Query: 117  LSEHNLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAESTEVSSSGI 176
            +  H  K HP   + K+T          E  ++D+    + + + + E  E++ +   G 
Sbjct: 1530 VLTHYQKRHP---SIKVTA---------EDFVHDVE-QSADISQNDVE--ETSRIFKQGY 1574

Query: 177  SISKTPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVENPSSSASESNTST 236
               +  +       +E  ++ +H+    + PE       P +  +   P  +   S +  
Sbjct: 1575 GAYRCKLCPYTHGTLE--KLKIHYEKYHNQPEFDVFSQSPPKLPVPLEPEMTTEVSPSQV 1632

Query: 237  SI 238
            SI
Sbjct: 1633 SI 1634


>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
          Length = 402

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 12/131 (9%)

Query: 582 VLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDESNAGSSK 641
           V +  +L+SS L +  LN +   +  T R +     +     AL+++  E D S + S K
Sbjct: 114 VCKDDYLSSSSLKEGSLNSV---SSCTDRSLSPDLQD-----ALQDDPKETDNSTS-SDK 164

Query: 642 EEAGETSPADESGAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLAR 701
           E A   +    SG  + G    I  K   QL  LK+AF  T  P+    ++LA+E+GL  
Sbjct: 165 ETANNENEEQNSGTKRRGPRTTIKAK---QLETLKAAFAATPKPTRHIREQLAQETGLNM 221

Query: 702 TDIVSWFGDTR 712
             I  WF + R
Sbjct: 222 RVIQVWFQNRR 232


>gi|91982772 mucin 17 [Homo sapiens]
          Length = 4493

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 76/364 (20%), Positives = 129/364 (35%), Gaps = 49/364 (13%)

Query: 232  SNTSTSIVNRIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNSIPTYNA 291
            S  ST     +  ST  T  T A++ P  A+  +  ++  +    P   +PV++ P  ++
Sbjct: 3355 SEASTLSTTPVDTSTPVTTSTEASLSPTTAEGTSIPTSSPSEGTTPLASMPVSTTPVVSS 3414

Query: 292  AL--------DNNPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSW 343
             +        D+N L+  +      PT++E T L      T  +     S   L    S 
Sbjct: 3415 EVNTLSTTPVDSNTLVTTSTEASSSPTIAEGTSLPTS---TTSEGSTPLSIMPL----ST 3467

Query: 344  TPEEVEEARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAG 403
            TP    EA       T+ T P   T  P   S+ +N  P+   T ++   P    T  AG
Sbjct: 3468 TPVASSEA------STLSTTPVD-TSTPVTTSSPTNSSPT---TAEVTSMP----TSTAG 3513

Query: 404  TNTLPVT------APIALTVAGVPSQNNIQKSQVPAAQPTAETKPATAAVPTSQ------ 451
              + P+T       P+A + A   S   +  +    +   A + PAT  V T +      
Sbjct: 3514 EGSTPLTNMPVSTTPVASSEASTLSTTPVDSNTFVTSSSQASSSPATLQVTTMRMSTPSE 3573

Query: 452  ------SVKHETALVNPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTK 505
                  ++   +  V        +  + ++   +  S   N  P   E+I L   T    
Sbjct: 3574 GSSSLTTMLLSSTYVTSSEASTPSTPSVDRSTPVTTSTQSNSTPTPPEVITLPMSTPSEV 3633

Query: 506  GEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIIIDSSDETTESPTVGTAQPKQSWNPFP 565
                     +  +   S++     L  D+ST +I  +S + + SP          W P  
Sbjct: 3634 STPLTIMPVSTTSVTISEAGTASTLPVDTSTPVI--TSTQVSSSPVTPEGTTMPIWTPSE 3691

Query: 566  DFTP 569
              TP
Sbjct: 3692 GSTP 3695



 Score = 35.0 bits (79), Expect = 0.30
 Identities = 70/310 (22%), Positives = 108/310 (34%), Gaps = 66/310 (21%)

Query: 166  AESTEVSSSGISISKTPI--MKMMKNKVENKRIAVHHNSVED----VPEEKENEIKPDRE 219
            AE T + +S +S   TP+  + +    V N  ++    +  D         E    P   
Sbjct: 2264 AEGTSIPTSTLSEGTTPLTSIPVSHTLVANSEVSTLSTTPVDSNTPFTTSTEASSPPPTA 2323

Query: 220  EIVENPSSSASESNT-------STSIVNRIHPSTASTVV----TP------AAVLPGLAQ 262
            E    P+S++SE NT       ST++V     ST ST      TP      A   P  A 
Sbjct: 2324 EGTSMPTSTSSEGNTPLTRMPVSTTMVASFETSTLSTTPADTSTPVTTYSQAGSSPTTAD 2383

Query: 263  VITAVSAQQNSNLIPKVLIPVNSIPTYNAALDNNPLLLNTYNKFPYPTMSEITVLS--AQ 320
              +  ++  +    P   +PV+++P  ++         +T++  P  T + +T  +  + 
Sbjct: 2384 DTSMPTSTYSEGSTPLTSVPVSTMPVVSSEA-------STHSTTPVDTSTPVTTSTEASS 2436

Query: 321  AKYTEEQIKIWFSAQR------LKHGVSWTPEEVEEARRKQFNGTVHTVPQTITVIPTHI 374
            +  T E   I  S             VS TP    EA      GT+ T P   T  P   
Sbjct: 2437 SPTTAEGTSIPTSPPSEGTTPLASMPVSTTPVVSSEA------GTLSTTPVD-TSTPMTT 2489

Query: 375  STGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGVPSQNNIQKSQVPAA 434
            ST ++  P                     T    +  PI+    G     +I  S  P A
Sbjct: 2490 STEASSSP---------------------TTAEDIVVPISTASEGSTLLTSIPVSTTPVA 2528

Query: 435  QPTAETKPAT 444
             P A T   T
Sbjct: 2529 SPEASTLSTT 2538



 Score = 30.8 bits (68), Expect = 5.7
 Identities = 58/347 (16%), Positives = 116/347 (33%), Gaps = 20/347 (5%)

Query: 160  EENAEQAESTEVSSSGISISKTPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDRE 219
            + N     S++ SSS  ++  T +     ++  +    +  +S      E      P  +
Sbjct: 3543 DSNTFVTSSSQASSSPATLQVTTMRMSTPSEGSSSLTTMLLSSTYVTSSEASTPSTPSVD 3602

Query: 220  EIVENPSSSASESNTSTSIVNRIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKV 279
                  +S+ S S  +   V  +  ST S V TP  ++P     +T   A   S L    
Sbjct: 3603 RSTPVTTSTQSNSTPTPPEVITLPMSTPSEVSTPLTIMPVSTTSVTISEAGTASTLPVDT 3662

Query: 280  LIPV---------------NSIPTYNAALDNNPLLLNTYNKFPYPTMSEITVLSAQAKYT 324
              PV                ++P +  +  + PL     +     T SE + LS  +  T
Sbjct: 3663 STPVITSTQVSSSPVTPEGTTMPIWTPSEGSTPLTTMPVST-TRVTSSEGSTLSTPSVVT 3721

Query: 325  EEQIKIWFSAQRLKHGVSWTPEEVEEARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSI 384
               +    S + +    +     +  +   + +    T+  + T +     + +  +PS+
Sbjct: 3722 STPVTT--STEAISSSATLDSTTMSVSMPMEISTLGTTILVSTTPVTRFPESSTPSIPSV 3779

Query: 385  LQTCQI--VGQPGLVLTQVAGTNTLPVTAPIALTVAGVPSQNNIQKSQVPAAQPTAETKP 442
              +  +    +     T + GT T+P++     +        +      P+   T  T P
Sbjct: 3780 YTSMSMTTASEGSSSPTTLEGTTTMPMSTTSERSTLLTTVLISPISVMSPSEASTLSTPP 3839

Query: 443  ATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELKVSYLKNQFP 489
               + P   S K  +  +  +   IR   T E+   L    +    P
Sbjct: 3840 GDTSTPLLTSTKAGSFSIPAEVTTIRISITSERSTPLTTLLVSTTLP 3886


>gi|61969662 double homeobox A [Homo sapiens]
          Length = 204

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 10/139 (7%)

Query: 576 TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDES 635
           T EQL++L  +F            +L  +       I  WF  ++     ++      E+
Sbjct: 23  TEEQLKILINTFNQKPYPGYATKQKLALEINTEESRIQIWFQNRRARHGFQKRP----EA 78

Query: 636 NAGSSKEEAGETSPADESGAPKSGSTGKICKKT--PEQLHMLKSAFVRTQWPSPEEYDKL 693
               S +  G+    D+ G        + C+ T    QLH L  AF++  +P  +  ++L
Sbjct: 79  ETLESSQSQGQ----DQPGVEFQSREARRCRTTYSASQLHTLIKAFMKNPYPGIDSREEL 134

Query: 694 AKESGLARTDIVSWFGDTR 712
           AKE G+  + +  WF + R
Sbjct: 135 AKEIGVPESRVQIWFQNRR 153



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 22/116 (18%)

Query: 298 LLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPE----------- 346
           +L+NT+N+ PYP  +    L+ +    E +I+IWF  +R +HG    PE           
Sbjct: 29  ILINTFNQKPYPGYATKQKLALEINTEESRIQIWFQNRRARHGFQKRPEAETLESSQSQG 88

Query: 347 --------EVEEARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSILQTCQIVGQP 394
                   +  EARR +   T ++  Q  T+I   +     G+ S  +  + +G P
Sbjct: 89  QDQPGVEFQSREARRCR---TTYSASQLHTLIKAFMKNPYPGIDSREELAKEIGVP 141


>gi|239758038 PREDICTED: mucin 3A, cell surface associated, partial
           [Homo sapiens]
          Length = 909

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 55/257 (21%), Positives = 94/257 (36%), Gaps = 41/257 (15%)

Query: 220 EIVENPSSSASESNTSTSIVNRIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKV 279
           E   + + S S S T+T         T+ T VTP  V P      +++S           
Sbjct: 328 ETTSHSTPSFSSSITTTETXXXXXXXTSETAVTPTPVTP------SSLSTD--------- 372

Query: 280 LIPVNSIPTYNAALDNNPLLLNTYNKFP--------YPTMSEITVLSAQAKYTEEQIKIW 331
            IP  S+ T   +       L T   FP         PT + I   S   + TE    + 
Sbjct: 373 -IPTTSLRTLTPSSVGTSTSLTTTTDFPSIPTDISTLPTRTHIISSSPSIQSTETSSLVG 431

Query: 332 FSAQRLKHGVSWTPEEVEEARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSILQTCQIV 391
            ++  +   V  T    E      F+ ++  +P+T T  P  +++ +    S   T    
Sbjct: 432 TTSPTMST-VRMTLRITENTPISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTF 490

Query: 392 GQ------------PGLVLTQVAGTNTLPVTAPIALTVAGVPSQNNIQKSQVPAAQPTAE 439
           G             P   L+ +  T+ +P+ +  + T+   PS  ++Q S    ++ T E
Sbjct: 491 GSTDSSTSTLHTLTPSTALSTIVSTSQVPIPSTHSSTLQTTPSTPSLQTSLTSTSEFTTE 550

Query: 440 T----KPATAAVPTSQS 452
           +      +T A+ TS S
Sbjct: 551 SFTRGSTSTNAILTSFS 567



 Score = 35.4 bits (80), Expect = 0.23
 Identities = 53/246 (21%), Positives = 87/246 (35%), Gaps = 29/246 (11%)

Query: 223 ENPSSSA---SESNTSTSIVNRIHPS---TASTVVTPAAVLPGLAQVITAVSAQQNSN-- 274
           E PSSS    + S T+T   +   PS   + ST  T +   P    +IT      +S   
Sbjct: 22  ETPSSSTPSFTSSITTTETTSHSTPSFTSSISTTETTSHSTPSFTSLITITETTSHSTPS 81

Query: 275 ---LIPKVLIPVNSIPTYNAALDNNPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKIW 331
               I     P +S P+Y  ++        T  + P  +    T      + T      +
Sbjct: 82  YTTSITTTETPSHSTPSYTTSI--------TTTETPSHSTPSFTSSITTTETTSHSTPSF 133

Query: 332 FSAQRLKHGVSWTPEEVEEARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSILQTCQIV 391
            S+ R     S++      +       T H+ P  IT I T   T S+  PS   +    
Sbjct: 134 TSSIRTTETTSYSTPSFTSSNTIT-ETTSHSTPSYITSITT-TETPSSSTPSFSSS---- 187

Query: 392 GQPGLVLTQVAGTNTLPVTAPIALTVAGVPSQNNIQKSQVPAAQPTAETKPATAAVPTSQ 451
               +  T+    +T   T+ I  T     S  +   S       + +T   T+++ TS+
Sbjct: 188 ----ITTTETTSHSTPGFTSSITTTETTSHSTPSFTSSITTTETTSHDTPSFTSSITTSE 243

Query: 452 SVKHET 457
           +  H T
Sbjct: 244 TPSHST 249


>gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens]
          Length = 1294

 Score = 40.8 bits (94), Expect = 0.006
 Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 26/186 (13%)

Query: 70  YECKYCTFQTPDLNMFTFHVDSEH--------------------PNVVLNSSYVCVECNF 109
           ++C  C+F TPD+++  FH +S H                     +V  +  + C +C+F
Sbjct: 627 HQCHQCSFTTPDVDVLLFHYESVHESQASDVKQEANHLQGSDGQQSVKESKEHSCTKCDF 686

Query: 110 LTKRYDALSEHNLKYHPGEENFKLTMVKRNNQTIFEQTINDLTFDGSFVKEENAEQAEST 169
           +T+  + +S H  + H   +  + +    + Q++ E       F+    +E++   A   
Sbjct: 687 ITQVEEEISRHYRRAHSCYKCRQCSFTAADTQSLLEH------FNTVHCQEQDITTANGE 740

Query: 170 EVSSSGISISKTPIMKMMKNKVENKRIAVHHNSVEDVPEEKENEIKPDREEIVENPSSSA 229
           E   +  +I + P +      +      +     E V + ++ E K   +E V   SSS 
Sbjct: 741 EDGHAISTIKEEPKIDFRVYNLLTPDSKMGEPVSESVVKREKLEEKDGLKEKVWTESSSD 800

Query: 230 SESNTS 235
              N +
Sbjct: 801 DLRNVT 806



 Score = 34.3 bits (77), Expect = 0.52
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 44  ESISSD--EEVHESVDSDNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS 101
           ES +SD  +E +    SD QQ+ K    + C  C F T      + H    H      S 
Sbjct: 651 ESQASDVKQEANHLQGSDGQQSVKESKEHSCTKCDFITQVEEEISRHYRRAH------SC 704

Query: 102 YVCVECNFLTKRYDALSEHNLKYHPGEEN 130
           Y C +C+F      +L EH    H  E++
Sbjct: 705 YKCRQCSFTAADTQSLLEHFNTVHCQEQD 733


>gi|21361183 paired-like homeodomain transcription factor 2 isoform
           c [Homo sapiens]
          Length = 324

 Score = 40.8 bits (94), Expect = 0.006
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 411 APIALTVAGVPSQNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNPDSFGIRAK 470
           A  ++   G P   +  K ++     +  + P  A    SQ  K+E       S   R +
Sbjct: 34  AMASVLAPGQPRSLDSSKHRLEVHTISDTSSPEAAEKDKSQQGKNEDVGAEDPSKKKRQR 93

Query: 471 K-----TKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 525
           +     T +QL EL+ ++ +N++P  S    +   T LT+  ++ WF + R   R  + N
Sbjct: 94  RQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERN 153

Query: 526 Q 526
           Q
Sbjct: 154 Q 154



 Score = 33.9 bits (76), Expect = 0.68
 Identities = 36/188 (19%), Positives = 73/188 (38%), Gaps = 18/188 (9%)

Query: 302 TYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSWTPEEVEEARR---KQFNG 358
           T+ +  YP MS    ++     TE ++++WF  +R K       ++ E  +     QFNG
Sbjct: 110 TFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNG 169

Query: 359 TVHTVPQTIT-----------VIPTHISTGS----NGLPSILQTCQIVGQPGLVLTQVAG 403
            +                   +    +ST S    N +     + Q +  P   ++ ++ 
Sbjct: 170 LMQPYDDMYPGYSYNNWAAKGLTSASLSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSM 229

Query: 404 TNTLPVTAPIALTVAGVPSQNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNPD 463
           ++++  +A   +  + + S NN+     P+      T     A PT   V  +T   +  
Sbjct: 230 SSSMVPSAVTGVPGSSLNSLNNLNNLSSPSLNSAVPTPACPYAPPTPPYVYRDTCNSSLA 289

Query: 464 SFGIRAKK 471
           S  ++AK+
Sbjct: 290 SLRLKAKQ 297



 Score = 33.1 bits (74), Expect = 1.2
 Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 21/142 (14%)

Query: 628 EKMEIDESNAGSSKEEAGETSPADESGAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSP 687
           E  E D+S  G + E+ G   P+ +    +  +       T +QL  L++ F R ++P  
Sbjct: 66  EAAEKDKSQQGKN-EDVGAEDPSKKKRQRRQRT-----HFTSQQLQELEATFQRNRYPDM 119

Query: 688 EEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSANSSSMNGLSSLRKRGRGR 747
              +++A  + L    +  WF + R  W+                  N  + L K G G 
Sbjct: 120 STREEIAVWTNLTEARVRVWFKNRRAKWR--------------KRERNQQAELCKNGFG- 164

Query: 748 PKGRGRGRPRGRPRGSKRINNW 769
           P+  G  +P          NNW
Sbjct: 165 PQFNGLMQPYDDMYPGYSYNNW 186


>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
          Length = 743

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 309 PTMSEITVLSAQAKYTEEQIKIWFSAQRLKH------GVSWTPEEVEEARRKQFNGTVHT 362
           PT  EIT+++ Q    +E I++WF  +R K           T     +A        V T
Sbjct: 404 PTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSSSPIKAIFPSPTSLVAT 463

Query: 363 VPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPVTAPIALTVAGVPS 422
            P  +T       T S  LP        +   G   T    T T+  TAP A +    PS
Sbjct: 464 TPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVTSPS 523

Query: 423 QNNIQKSQVPAAQPTAETKPATAAVPTSQSVKHETALVNP 462
            +       P+   +A T  A++A  TS +    T L +P
Sbjct: 524 LS-------PSPSASASTSEASSASETSTTQTTSTPLSSP 556



 Score = 33.9 bits (76), Expect = 0.68
 Identities = 49/222 (22%), Positives = 77/222 (34%), Gaps = 29/222 (13%)

Query: 449 TSQSVKHETALVNPDSFGIRAKKTKEQLAE------LKVSYLKNQFPHDSEIIRLMKITG 502
           +  S+   +AL +P   G+  ++ K    E      L+ S+L+NQ P   EI  +     
Sbjct: 358 SDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLN 417

Query: 503 LTKGEIKKWFSDTRYNQRNSKSNQCLHLNNDSSTTIIIDSSDETTESPTVGTAQPKQSWN 562
           + K  I+ WF + R  ++         +N  SS             SPT   A       
Sbjct: 418 MEKEVIRVWFCNRRQKEK--------RINPPSSGGTSSSPIKAIFPSPTSLVAT------ 463

Query: 563 PFPDFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 622
                TP       A  L V     L S+ +T+  +      T      + +  T    S
Sbjct: 464 -----TPSLVTSSAATTLTVSPVLPLTSAAVTNLSVTGTSDTTSNNTATVIS--TAPPAS 516

Query: 623 KALKEEKMEIDESNAGSSKE--EAGETSPADESGAPKSGSTG 662
            A+    +    S + S+ E   A ETS    +  P S   G
Sbjct: 517 SAVTSPSLSPSPSASASTSEASSASETSTTQTTSTPLSSPLG 558


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 10/175 (5%)

Query: 552 VGTAQPKQSWNPFPDFTPQKFKEKTAEQLR-VLQASFLNSSVLTDEELNRLRAQTKLTR- 609
           +G ++PKQ   P  +   +++K +        ++   L  +V     +  + + +++ R 
Sbjct: 101 IGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRS 160

Query: 610 -----REIDAWFTEKKKSKALKEEKMEID---ESNAGSSKEEAGETSPADESGAPKSGST 661
                 E +A    K+  ++ K+ K  ID      A + + + G    ++     K    
Sbjct: 161 KFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQR 220

Query: 662 GKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWK 716
                 T EQL  L+ AF RT +P     ++LA+ + L    +  WF + R  W+
Sbjct: 221 RSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275



 Score = 32.7 bits (73), Expect = 1.5
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 468 RAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYN-QRNSKSNQ 526
           R   T EQL EL+ ++ +  +P       L +   LT+  ++ WFS+ R   ++ + +NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282

Query: 527 CLHLNNDSSTTIIIDSSDETTESPTVGTAQ 556
            +  N+      +I      T  PT+ T Q
Sbjct: 283 LMAFNH------LIPGGFPPTAMPTLPTYQ 306


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 10/175 (5%)

Query: 552 VGTAQPKQSWNPFPDFTPQKFKEKTAEQLR-VLQASFLNSSVLTDEELNRLRAQTKLTR- 609
           +G ++PKQ   P  +   +++K +        ++   L  +V     +  + + +++ R 
Sbjct: 101 IGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRS 160

Query: 610 -----REIDAWFTEKKKSKALKEEKMEID---ESNAGSSKEEAGETSPADESGAPKSGST 661
                 E +A    K+  ++ K+ K  ID      A + + + G    ++     K    
Sbjct: 161 KFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQR 220

Query: 662 GKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWK 716
                 T EQL  L+ AF RT +P     ++LA+ + L    +  WF + R  W+
Sbjct: 221 RSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275



 Score = 32.7 bits (73), Expect = 1.5
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 468 RAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYN-QRNSKSNQ 526
           R   T EQL EL+ ++ +  +P       L +   LT+  ++ WFS+ R   ++ + +NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282

Query: 527 CLHLNNDSSTTIIIDSSDETTESPTVGTAQ 556
            +  N+      +I      T  PT+ T Q
Sbjct: 283 LMAFNH------LIPGGFPPTAMPTLPTYQ 306


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 10/175 (5%)

Query: 552 VGTAQPKQSWNPFPDFTPQKFKEKTAEQLR-VLQASFLNSSVLTDEELNRLRAQTKLTR- 609
           +G ++PKQ   P  +   +++K +        ++   L  +V     +  + + +++ R 
Sbjct: 101 IGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRS 160

Query: 610 -----REIDAWFTEKKKSKALKEEKMEID---ESNAGSSKEEAGETSPADESGAPKSGST 661
                 E +A    K+  ++ K+ K  ID      A + + + G    ++     K    
Sbjct: 161 KFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQR 220

Query: 662 GKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWK 716
                 T EQL  L+ AF RT +P     ++LA+ + L    +  WF + R  W+
Sbjct: 221 RSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275



 Score = 32.7 bits (73), Expect = 1.5
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 468 RAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYN-QRNSKSNQ 526
           R   T EQL EL+ ++ +  +P       L +   LT+  ++ WFS+ R   ++ + +NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282

Query: 527 CLHLNNDSSTTIIIDSSDETTESPTVGTAQ 556
            +  N+      +I      T  PT+ T Q
Sbjct: 283 LMAFNH------LIPGGFPPTAMPTLPTYQ 306


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 10/175 (5%)

Query: 552 VGTAQPKQSWNPFPDFTPQKFKEKTAEQLR-VLQASFLNSSVLTDEELNRLRAQTKLTR- 609
           +G ++PKQ   P  +   +++K +        ++   L  +V     +  + + +++ R 
Sbjct: 101 IGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRS 160

Query: 610 -----REIDAWFTEKKKSKALKEEKMEID---ESNAGSSKEEAGETSPADESGAPKSGST 661
                 E +A    K+  ++ K+ K  ID      A + + + G    ++     K    
Sbjct: 161 KFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQR 220

Query: 662 GKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWK 716
                 T EQL  L+ AF RT +P     ++LA+ + L    +  WF + R  W+
Sbjct: 221 RSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275



 Score = 32.7 bits (73), Expect = 1.5
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 468 RAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYN-QRNSKSNQ 526
           R   T EQL EL+ ++ +  +P       L +   LT+  ++ WFS+ R   ++ + +NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282

Query: 527 CLHLNNDSSTTIIIDSSDETTESPTVGTAQ 556
            +  N+      +I      T  PT+ T Q
Sbjct: 283 LMAFNH------LIPGGFPPTAMPTLPTYQ 306


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 10/175 (5%)

Query: 552 VGTAQPKQSWNPFPDFTPQKFKEKTAEQLR-VLQASFLNSSVLTDEELNRLRAQTKLTR- 609
           +G ++PKQ   P  +   +++K +        ++   L  +V     +  + + +++ R 
Sbjct: 101 IGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRS 160

Query: 610 -----REIDAWFTEKKKSKALKEEKMEID---ESNAGSSKEEAGETSPADESGAPKSGST 661
                 E +A    K+  ++ K+ K  ID      A + + + G    ++     K    
Sbjct: 161 KFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQR 220

Query: 662 GKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWK 716
                 T EQL  L+ AF RT +P     ++LA+ + L    +  WF + R  W+
Sbjct: 221 RSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275



 Score = 32.7 bits (73), Expect = 1.5
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 468 RAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYN-QRNSKSNQ 526
           R   T EQL EL+ ++ +  +P       L +   LT+  ++ WFS+ R   ++ + +NQ
Sbjct: 223 RTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQ 282

Query: 527 CLHLNNDSSTTIIIDSSDETTESPTVGTAQ 556
            +  N+      +I      T  PT+ T Q
Sbjct: 283 LMAFNH------LIPGGFPPTAMPTLPTYQ 306


>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
          Length = 1486

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 55/251 (21%), Positives = 96/251 (38%), Gaps = 42/251 (16%)

Query: 226 SSSASESNTSTSIVNRIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNS 285
           S+  S  +TST+ +   H +T+ T VTP  V P      +++S            IP  S
Sbjct: 609 STIYSTVSTSTTAITS-HFTTSETAVTPTPVTP------SSLSTD----------IPTTS 651

Query: 286 IPTYNAALDNNPLLLNTYNKFP--------YPTMSEITVLSAQAKYTEEQIKIWFSAQRL 337
           + T   +       L T   FP         PT + I   S   + TE    +  ++  +
Sbjct: 652 LRTLTPSSVGTSTSLTTTTDFPSIPTDISTLPTRTHIISSSPSIQSTETSSLVGTTSPTM 711

Query: 338 KHGVSWTPEEVEEARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSILQTCQIVGQ---- 393
              V  T    E      F+ ++  +P+T T  P  +++ +    S   T    G     
Sbjct: 712 ST-VRMTLRITENTPISSFSTSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSS 770

Query: 394 --------PGLVLTQVAGTNTLPVTAPIALTVAGVPSQNNIQKSQVPAAQPTAET----K 441
                   P   L+ +  T+ +P+ +  + T+   PS  ++Q S    ++ T E+     
Sbjct: 771 TSTLHTLTPSTALSTIVSTSQVPIPSTHSSTLQTTPSTPSLQTSLTSTSEFTTESFTRGS 830

Query: 442 PATAAVPTSQS 452
            +T A+ TS S
Sbjct: 831 TSTNAILTSFS 841


>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
          Length = 406

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 633 DESNAGSSKEEAGETSPADES-GAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYD 691
           D  +A  S +EAG     D++ GA + G    I  K   QL  LK+AF  T  P+    +
Sbjct: 155 DSESANVSDKEAGSNENDDQNLGAKRRGPRTTIKAK---QLETLKAAFAATPKPTRHIRE 211

Query: 692 KLAKESGLARTDIVSWFGDTR 712
           +LA+E+GL    I  WF + R
Sbjct: 212 QLAQETGLNMRVIQVWFQNRR 232


>gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens]
          Length = 781

 Score = 40.0 bits (92), Expect = 0.009
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 470 KKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 526
           +K++  L EL   Y +N++P  +E   L KITGL+  ++  WF + R   RN    Q
Sbjct: 232 EKSRNALKEL---YKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQ 285



 Score = 35.0 bits (79), Expect = 0.30
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 675 LKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 717
           LK  + + ++PSP E   LAK +GL+ T + +WF + R   +N
Sbjct: 238 LKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRN 280



 Score = 32.7 bits (73), Expect = 1.5
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 2/113 (1%)

Query: 742 KRGRGRPKGRGRGRPRGRPRGSKRINNWDRGPSLIKFKTGTA-ILKDYYLKHKFLNEQDL 800
           +R RGRP G    + R R +       WD   ++  FK  +   LK+ Y ++++ +  + 
Sbjct: 195 ERARGRPLG-AVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEK 253

Query: 801 DELVNKSHMGYEQVREWFAERQRRSELGIELFEENEEEDEVIDDQEEDEEETD 853
             L   + +   QV  WF  R++R     E   ++E +     + E  +   D
Sbjct: 254 RHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPSTEDESSKGHED 306



 Score = 30.0 bits (66), Expect = 9.8
 Identities = 83/449 (18%), Positives = 157/449 (34%), Gaps = 63/449 (14%)

Query: 178 ISKTPIMKMMKNKVENKR--IAVHHNSVEDVPEEKENEIKPDREEIVENPSSSASESNTS 235
           +S T +    KN+ +  R        S  D     E+E     E++  +P SS+S+  T+
Sbjct: 262 LSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPSTEDESSKGHEDLSPHPLSSSSDGITN 321

Query: 236 TSIVNRIHPSTASTVVTPAAVLPGLAQVITAVSAQQNSNLIPKVLIPVNSIPTYNAALDN 295
            S+ + + P     +        G A+    +S   +  L+   L+P ++ P +   L+ 
Sbjct: 322 LSLSSHMEPVYMQQI--------GNAK----ISLSSSGVLLNGSLVPASTSPVF---LNG 366

Query: 296 NPLLLNTYNKFPYPTMSEITVLSAQAKYTEEQIKIWFSAQRLKHGVSW------TPEEVE 349
           N  +           ++ + V + QA           S+  + +G+S       T ++V+
Sbjct: 367 NSFIQGPSGVI----LNGLNVGNTQAVALNPP---KMSSNIVSNGISMTDILGSTSQDVK 419

Query: 350 EARRKQFNGTVHTVPQTITVIPTHISTGSNGLPSILQTCQIVGQPGLVLTQVAGTNTLPV 409
           E +  Q +    T       +P          P ++ + ++  +    +    G + +  
Sbjct: 420 EFKVLQSSANSATTTSYSPSVPV-------SFPGLIPSTEVKREGIQTVASQDGGSVVTF 472

Query: 410 TAPIALTVAG-VPSQNNIQKSQV--------PAAQPTAETKPATAAVPTSQSVKHETALV 460
           T P+ +   G V   N+   SQ         P   P      +   +  S S    +   
Sbjct: 473 TTPVQINQYGIVQIPNSGANSQFLNGSIGFSPLQLPPVSVAASQGNISVSSSTSDGSTFT 532

Query: 461 NPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQR 520
           +  +   + K     LA   V Y     P+  + I  +K  GL +  +   FS      +
Sbjct: 533 SESTTVQQGKVFLSSLAPSAVVY---TVPNTGQTIGSVKQEGLERSLV---FSQLMPVNQ 586

Query: 521 NSKSNQCLHLNNDSSTTIIIDSSDETTESPTVG-TAQPKQSWNPF----------PDFTP 569
           N++ N  L   N S + +   +S     SPT   +  P    NP           P   P
Sbjct: 587 NAQVNANLSSENISGSGLHPLASSLVNVSPTHNFSLSPSTLLNPTELNRDIADSQPMSAP 646

Query: 570 QKFKEKTAEQLRVLQASFLNSSVLTDEEL 598
              K           A+  N S++T ++L
Sbjct: 647 VASKSTVTSVSNTNYATLQNCSLITGQDL 675


>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
           [Homo sapiens]
          Length = 522

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 26/160 (16%)

Query: 620 KKSKALKEEKMEIDESNAGSSKEEA-------GETSPADESGAPKSGSTGKICKKTPEQL 672
           KK +  KE++ ++++ +   SKE         GE    DE+ +          K  P  L
Sbjct: 24  KKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVPLHL 83

Query: 673 HMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSANSS 732
            +++S     + P      +   E+     +  +   DTR +WK    K           
Sbjct: 84  DVVRSE--SQERPGSRNSSRCQPEANKPTHN--NRRNDTR-SWKRDREK---------RD 129

Query: 733 SMNGLSSLRK-----RGRGRPKGRGRGRPRGRPRGSKRIN 767
             + +SS+R      RG  R +GRGRGR RGR RG+ R+N
Sbjct: 130 DQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLN 169


>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
           [Homo sapiens]
          Length = 358

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 26/160 (16%)

Query: 620 KKSKALKEEKMEIDESNAGSSKEEA-------GETSPADESGAPKSGSTGKICKKTPEQL 672
           KK +  KE++ ++++ +   SKE         GE    DE+ +          K  P  L
Sbjct: 24  KKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVPLHL 83

Query: 673 HMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSANSS 732
            +++S     + P      +   E+     +  +   DTR +WK    K           
Sbjct: 84  DVVRSE--SQERPGSRNSSRCQPEANKPTHN--NRRNDTR-SWKRDREK---------RD 129

Query: 733 SMNGLSSLRK-----RGRGRPKGRGRGRPRGRPRGSKRIN 767
             + +SS+R      RG  R +GRGRGR RGR RG+ R+N
Sbjct: 130 DQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLN 169


>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
           [Homo sapiens]
          Length = 914

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 26/160 (16%)

Query: 620 KKSKALKEEKMEIDESNAGSSKEEA-------GETSPADESGAPKSGSTGKICKKTPEQL 672
           KK +  KE++ ++++ +   SKE         GE    DE+ +          K  P  L
Sbjct: 24  KKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVSEDEAQSSNQRKRANKHKWVPLHL 83

Query: 673 HMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSANSS 732
            +++S     + P      +   E+     +  +   DTR +WK    K           
Sbjct: 84  DVVRSE--SQERPGSRNSSRCQPEANKPTHN--NRRNDTR-SWKRDREK---------RD 129

Query: 733 SMNGLSSLRK-----RGRGRPKGRGRGRPRGRPRGSKRIN 767
             + +SS+R      RG  R +GRGRGR RGR RG+ R+N
Sbjct: 130 DQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLN 169


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 634 ESNAGSSKEEAGETSPADESGAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKL 693
           +  A ++K +   T    +SG P+   T      T EQL  L++ F  T++ S  E   L
Sbjct: 640 QGTATAAKPKRKRTGSDSKSGKPRRARTAF----TYEQLVALENKFKATRYLSVCERLNL 695

Query: 694 AKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGR 753
           A    L  T +  WF + R  WK  N         A++S+  G       G G   G G 
Sbjct: 696 ALSLSLTETQVKIWFQNRRTKWKKQN-------PGADTSAPTGGGG----GPGPGAGPGT 744

Query: 754 GRPRG 758
           G P G
Sbjct: 745 GLPGG 749


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 634 ESNAGSSKEEAGETSPADESGAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKL 693
           +  A ++K +   T    +SG P+   T      T EQL  L++ F  T++ S  E   L
Sbjct: 75  QGTATAAKPKRKRTGSDSKSGKPRRARTAF----TYEQLVALENKFKATRYLSVCERLNL 130

Query: 694 AKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGR 753
           A    L  T +  WF + R  WK  N         A++S+  G       G G   G G 
Sbjct: 131 ALSLSLTETQVKIWFQNRRTKWKKQN-------PGADTSAPTGGGG----GPGPGAGPGT 179

Query: 754 GRPRG 758
           G P G
Sbjct: 180 GLPGG 184


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 634 ESNAGSSKEEAGETSPADESGAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKL 693
           +  A ++K +   T    +SG P+   T      T EQL  L++ F  T++ S  E   L
Sbjct: 237 QGTATAAKPKRKRTGSDSKSGKPRRARTAF----TYEQLVALENKFKATRYLSVCERLNL 292

Query: 694 AKESGLARTDIVSWFGDTRYAWKNGNLKWYYYYQSANSSSMNGLSSLRKRGRGRPKGRGR 753
           A    L  T +  WF + R  WK  N         A++S+  G       G G   G G 
Sbjct: 293 ALSLSLTETQVKIWFQNRRTKWKKQN-------PGADTSAPTGGGG----GPGPGAGPGT 341

Query: 754 GRPRG 758
           G P G
Sbjct: 342 GLPGG 346


>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
          Length = 1083

 Score = 39.7 bits (91), Expect = 0.012
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 820 ERQRRSELGIELFEENEEEDEVIDDQEEDEEETDDSDTWEP--PRHVKRKLSKSD 872
           + +RRS  G E  EE E+E+E  +++E DEEE ++ D   P  PRH    L ++D
Sbjct: 27  DEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEAD 81


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.126    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,530,547
Number of Sequences: 37866
Number of extensions: 1703122
Number of successful extensions: 16777
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 12200
Number of HSP's gapped (non-prelim): 3677
length of query: 873
length of database: 18,247,518
effective HSP length: 111
effective length of query: 762
effective length of database: 14,044,392
effective search space: 10701826704
effective search space used: 10701826704
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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