Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 62868210

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|62868210 GIY-YIG domain containing 1 isoform 2 [Homo
sapiens]
         (161 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|62868210 GIY-YIG domain containing 1 isoform 2 [Homo sapiens]      350   3e-97
gi|30089945 GIY-YIG domain containing 2 isoform 2 [Homo sapiens]      350   3e-97
gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens]      184   4e-47
gi|13129004 GIY-YIG domain containing 2 isoform 1 [Homo sapiens]      184   4e-47
gi|110349756 zygin 2 isoform 2 [Homo sapiens]                          31   0.40 
gi|110349754 zygin 2 isoform 1 [Homo sapiens]                          31   0.40 
gi|11545839 protease, serine, 22 [Homo sapiens]                        30   0.69 
gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo ...    30   1.2  
gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo ...    30   1.2  
gi|10190664 twisted gastrulation [Homo sapiens]                        30   1.2  
gi|169212006 PREDICTED: similar to hCG1816473 [Homo sapiens]           28   2.6  
gi|188536004 zinc finger protein 469 [Homo sapiens]                    28   2.6  
gi|124249392 DNL-type zinc finger [Homo sapiens]                       28   3.4  
gi|194018748 CD6 molecule [Homo sapiens]                               28   4.5  
gi|188497648 ubiquitin specific peptidase 37 [Homo sapiens]            28   4.5  
gi|14150005 zinc and ring finger protein 1 [Homo sapiens]              28   4.5  
gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]             27   5.8  
gi|169211572 PREDICTED: similar to hCG1816473 [Homo sapiens]           27   7.6  
gi|239754431 PREDICTED: hypothetical protein [Homo sapiens]            27   7.6  
gi|169211191 PREDICTED: similar to hCG1816473 [Homo sapiens]           27   7.6  
gi|38348414 von Willebrand factor C domain containing 2 [Homo sa...    27   7.6  
gi|22027612 TNF receptor-associated factor 2 [Homo sapiens]            27   9.9  
gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]            27   9.9  
gi|239750031 PREDICTED: hypothetical protein [Homo sapiens]            27   9.9  
gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo ...    27   9.9  

>gi|62868210 GIY-YIG domain containing 1 isoform 2 [Homo sapiens]
          Length = 161

 Score =  350 bits (898), Expect = 3e-97
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
           MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
Sbjct: 1   MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60

Query: 61  GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ 120
           GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
Sbjct: 61  GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ 120

Query: 121 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET 161
           CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
Sbjct: 121 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET 161


>gi|30089945 GIY-YIG domain containing 2 isoform 2 [Homo sapiens]
          Length = 161

 Score =  350 bits (898), Expect = 3e-97
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
           MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
Sbjct: 1   MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60

Query: 61  GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ 120
           GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
Sbjct: 61  GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ 120

Query: 121 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET 161
           CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
Sbjct: 121 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET 161


>gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens]
          Length = 275

 Score =  184 bits (466), Expect = 4e-47
 Identities = 81/83 (97%), Positives = 83/83 (100%)

Query: 79  LRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ 138
           ++DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ
Sbjct: 193 IQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ 252

Query: 139 MDTEKEVEDSELEEAHWTDLLET 161
           MDTEKEVEDSELEEAHWTDLLET
Sbjct: 253 MDTEKEVEDSELEEAHWTDLLET 275



 Score =  172 bits (437), Expect = 9e-44
 Identities = 81/82 (98%), Positives = 81/82 (98%)

Query: 1  MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
          MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
Sbjct: 1  MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60

Query: 61 GPWEMVLVVHGFPSSVAALRDE 82
          GPWEMVLVVHGFPSSVAALR E
Sbjct: 61 GPWEMVLVVHGFPSSVAALRFE 82


>gi|13129004 GIY-YIG domain containing 2 isoform 1 [Homo sapiens]
          Length = 275

 Score =  184 bits (466), Expect = 4e-47
 Identities = 81/83 (97%), Positives = 83/83 (100%)

Query: 79  LRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ 138
           ++DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ
Sbjct: 193 IQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ 252

Query: 139 MDTEKEVEDSELEEAHWTDLLET 161
           MDTEKEVEDSELEEAHWTDLLET
Sbjct: 253 MDTEKEVEDSELEEAHWTDLLET 275



 Score =  172 bits (437), Expect = 9e-44
 Identities = 81/82 (98%), Positives = 81/82 (98%)

Query: 1  MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
          MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
Sbjct: 1  MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60

Query: 61 GPWEMVLVVHGFPSSVAALRDE 82
          GPWEMVLVVHGFPSSVAALR E
Sbjct: 61 GPWEMVLVVHGFPSSVAALRFE 82


>gi|110349756 zygin 2 isoform 2 [Homo sapiens]
          Length = 380

 Score = 31.2 bits (69), Expect = 0.40
 Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 72  FPSSVAALRDEEGPLCCPHPGCLLRAHV----------ICLAEE-----FLQEEPGQLLP 116
           F     +L D+E     P PG    A             C  EE     F   +PG   P
Sbjct: 13  FQEPARSLLDQENCNASPEPGAEAGAEAGGGADGFPAPACSLEEKLSLCFRPSDPGAEPP 72

Query: 117 LEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAH 154
                P  E+SLL GD IW    D    V   + + +H
Sbjct: 73  RTAVRPITERSLLQGDEIWNALTDNYGNVMPVDWKSSH 110


>gi|110349754 zygin 2 isoform 1 [Homo sapiens]
          Length = 353

 Score = 31.2 bits (69), Expect = 0.40
 Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 72  FPSSVAALRDEEGPLCCPHPGCLLRAHV----------ICLAEE-----FLQEEPGQLLP 116
           F     +L D+E     P PG    A             C  EE     F   +PG   P
Sbjct: 13  FQEPARSLLDQENCNASPEPGAEAGAEAGGGADGFPAPACSLEEKLSLCFRPSDPGAEPP 72

Query: 117 LEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAH 154
                P  E+SLL GD IW    D    V   + + +H
Sbjct: 73  RTAVRPITERSLLQGDEIWNALTDNYGNVMPVDWKSSH 110


>gi|11545839 protease, serine, 22 [Homo sapiens]
          Length = 317

 Score = 30.4 bits (67), Expect = 0.69
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 55  WRTSGRGPWEMVLVVHGFPSSV--AALRDEEGPLCCPHPGCLLRAHVICLAEEFLQ-EEP 111
           WR +G+GP    ++  G+      A L D  GPL C   G  L A +I   E   +   P
Sbjct: 213 WRGAGQGPITEDMLCAGYLEGERDACLGDSGGPLMCQVDGAWLLAGIISWGEGCAERNRP 272

Query: 112 GQLLPLEGQCPCCEK 126
           G  + L       EK
Sbjct: 273 GVYISLSAHRSWVEK 287


>gi|239748932 PREDICTED: hypothetical protein XP_002346861 [Homo
          sapiens]
          Length = 162

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 20 YCLNPRY----RGRVYVGFTVNTARRVQQHNGGRKKGGAWR-TSGRGPWEMVLVVHG 71
          +CL P      +G VY  F    A+R+      R +GG  R  +GRG W   L  HG
Sbjct: 39 HCLQPSSPETAKGAVYASFAA-AAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHG 94


>gi|239742954 PREDICTED: hypothetical protein XP_002342704 [Homo
          sapiens]
          Length = 192

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 20 YCLNPRY----RGRVYVGFTVNTARRVQQHNGGRKKGGAWR-TSGRGPWEMVLVVHG 71
          +CL P      +G VY  F    A+R+      R +GG  R  +GRG W   L  HG
Sbjct: 39 HCLQPSSPETAKGAVYASFAA-AAKRMSARGRLRTRGGGERWAAGRGSWLQRLSQHG 94


>gi|10190664 twisted gastrulation [Homo sapiens]
          Length = 223

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 101 CLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIW 135
           CL +E  Q  PG     EG C CC++ +L    +W
Sbjct: 38  CLIQELCQCRPG-----EGNCSCCKECMLCLGALW 67


>gi|169212006 PREDICTED: similar to hCG1816473 [Homo sapiens]
          Length = 256

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 52  GGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEP 111
           GG W  +  G W +V  V G      AL+   GP   P P C               E P
Sbjct: 80  GGTWDLNHAGSWPVVQAVPG--RCGRALQAPGGP---PLPSC-----------HPSWESP 123

Query: 112 GQLLPLEGQCPCCEKSLLWGDLIWLCQM 139
           GQ   LE  CP C +  LW     LC +
Sbjct: 124 GQ-GGLEA-CPTCAQGSLWLPSAGLCSL 149


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 34   FTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLC-CPHPG 92
            F  + +   Q H+ GR  G    T+GR  +E         SS+ A R  E  L   P P 
Sbjct: 1795 FGASPSHAAQGHSAGRAGGHLHPTAGRPGFEGNEFAPAGASSLTAPRGREAWLVPVPSPA 1854

Query: 93   CLLRAHVICLAEEFLQEEPGQLLPLEG 119
            C+   H    +++     P + L L G
Sbjct: 1855 CVSNTHPSRRSQDPALSPPIRQLQLPG 1881


>gi|124249392 DNL-type zinc finger [Homo sapiens]
          Length = 178

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 56  RTSGRGPWEMVLVVHGFPSSVAA--LRDEEGPLCCPHPG 92
           R +G G  E+VL   G P+S AA    ++EGP   P PG
Sbjct: 138 RVAGEGALELVLEAAGAPTSTAAPEAGEDEGP---PSPG 173


>gi|194018748 CD6 molecule [Homo sapiens]
          Length = 668

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 17  YLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSG------RGPWEMVLVVH 70
           YL  C  P   G+ Y G   +      +H   R  GGA R  G      RG W  V    
Sbjct: 236 YLWDC--PGLPGQHYCGHKEDAGAVCSEHQSWRLTGGADRCEGQVEVHFRGVWNTVCDSE 293

Query: 71  GFPSSVAALRDEEGPLCCPHPGC 93
            +PS        E  + C   GC
Sbjct: 294 WYPS--------EAKVLCQSLGC 308


>gi|188497648 ubiquitin specific peptidase 37 [Homo sapiens]
          Length = 979

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 131 GDLIWLCQMDTEKEVEDSELEEA 153
           G++ WL Q D E+E E+ EL++A
Sbjct: 792 GEVDWLQQYDMEREREEQELQQA 814


>gi|14150005 zinc and ring finger protein 1 [Homo sapiens]
          Length = 227

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 43  QQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGC--LLRAHVI 100
           Q+  GG  + G      R      L +H  P   ++    + P+C        +    ++
Sbjct: 104 QETGGGHHRDGMLYLGSRASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMHFIM 163

Query: 101 CLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLI 134
           CL++  L      L    G+C  C + LL GD I
Sbjct: 164 CLSKPRLSYNDDVLTKDAGECVICLEELLQGDTI 197


>gi|7662168 suppression of tumorigenicity 18 [Homo sapiens]
          Length = 1047

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 16/56 (28%)

Query: 83  EGPLCCPHPGCLLRAHV--------------ICLAEEF-LQEEPGQL-LPLEGQCP 122
           E  L CP PGC  R HV              I  AE+  + ++  QL  P  GQCP
Sbjct: 407 ENVLKCPTPGCTGRGHVNSNRNTHRSLSGCPIAAAEKLAMSQDKNQLDSPQTGQCP 462


>gi|169211572 PREDICTED: similar to hCG1816473 [Homo sapiens]
          Length = 256

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 18/88 (20%)

Query: 52  GGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEP 111
           GG W  +  G W +V  V G        R  + P   P P C               E P
Sbjct: 80  GGTWDLNHAGSWPVVQAVPG-----RCGRAPQAPGGPPLPSC-----------HPSWESP 123

Query: 112 GQLLPLEGQCPCCEKSLLWGDLIWLCQM 139
           GQ   LE  CP C +  LW     LC +
Sbjct: 124 GQ-GGLEA-CPTCAQGSLWLPSAGLCSL 149


>gi|239754431 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 134

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 20 YCLNPRY----RGRVYVGFTVNTARRVQQHNGGRKKGGAWR-TSGRGPWEMVLV 68
          +CL P      +G VY  F    A+R+      R +GG  R  +GRG W   L+
Sbjct: 39 HCLQPSSPETAKGAVYASFAA-AAKRMSARGRLRTRGGGERWAAGRGSWLQRLI 91


>gi|169211191 PREDICTED: similar to hCG1816473 [Homo sapiens]
          Length = 256

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 18/88 (20%)

Query: 52  GGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEP 111
           GG W  +  G W +V  V G        R  + P   P P C               E P
Sbjct: 80  GGTWDLNHAGSWPVVQAVPG-----RCGRAPQAPGGPPLPSC-----------HPSWESP 123

Query: 112 GQLLPLEGQCPCCEKSLLWGDLIWLCQM 139
           GQ   LE  CP C +  LW     LC +
Sbjct: 124 GQ-GGLEA-CPTCAQGSLWLPSAGLCSL 149


>gi|38348414 von Willebrand factor C domain containing 2 [Homo
           sapiens]
          Length = 325

 Score = 26.9 bits (58), Expect = 7.6
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 6/28 (21%)

Query: 73  PSSVAALRDEEGPLC----CP--HPGCL 94
           PS+   L  EEGPLC    CP  HP C+
Sbjct: 173 PSACPCLCTEEGPLCAQPECPRLHPRCI 200


>gi|22027612 TNF receptor-associated factor 2 [Homo sapiens]
          Length = 501

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 72  FPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWG 131
           FP + A    E  P  CP  GC  +  +    +E+     G+   +  +CP C+  +  G
Sbjct: 91  FPDNAARREVESLPAVCPSDGCTWKGTL----KEYESCHEGRCPLMLTECPACKGLVRLG 146

Query: 132 D 132
           +
Sbjct: 147 E 147


>gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 516

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 88  CPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWL 136
           CPH  CLL    +   E  L    G +LP   Q  C      WGD  WL
Sbjct: 338 CPHLQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALC----PTWGDPWWL 382


>gi|239750031 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 356

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 88  CPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWL 136
           CPH  CLL    +   E  L    G +LP   Q  C      WGD  WL
Sbjct: 178 CPHLQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALC----PTWGDPWWL 222


>gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo
           sapiens]
          Length = 356

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 88  CPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWL 136
           CPH  CLL    +   E  L    G +LP   Q  C      WGD  WL
Sbjct: 178 CPHLQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALC----PTWGDPWWL 222


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.142    0.481 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,840,455
Number of Sequences: 37866
Number of extensions: 394097
Number of successful extensions: 766
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 31
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press