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Search of human proteins with 62865866
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62865866 homeobox B13 [Homo sapiens]
(284 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62865866 homeobox B13 [Homo sapiens] 598 e-171
gi|24497554 homeobox A13 [Homo sapiens] 251 4e-67
gi|24497536 homeobox C13 [Homo sapiens] 238 4e-63
gi|116734702 homeobox D13 [Homo sapiens] 218 4e-57
gi|24497547 homeobox C9 [Homo sapiens] 88 1e-17
gi|15029508 homeobox B9 [Homo sapiens] 83 3e-16
gi|23510368 homeobox D11 [Homo sapiens] 82 5e-16
gi|27804315 homeobox C12 [Homo sapiens] 81 9e-16
gi|182765442 homeobox A10 isoform a [Homo sapiens] 80 2e-15
gi|7657166 homeobox C11 [Homo sapiens] 78 8e-15
gi|5031759 homeobox A11 [Homo sapiens] 77 1e-14
gi|194353946 homeobox D12 [Homo sapiens] 77 2e-14
gi|194363768 homeobox D9 [Homo sapiens] 75 9e-14
gi|24497551 homeobox A10 isoform b [Homo sapiens] 74 1e-13
gi|23510366 homeobox D10 [Homo sapiens] 72 4e-13
gi|23097236 homeobox A9 [Homo sapiens] 72 7e-13
gi|24497533 homeobox C10 [Homo sapiens] 72 7e-13
gi|126090909 engrailed homeobox 1 [Homo sapiens] 67 1e-11
gi|4504469 homeobox B5 [Homo sapiens] 67 2e-11
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 65 7e-11
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 65 7e-11
gi|13273317 homeobox B8 [Homo sapiens] 65 9e-11
gi|18959212 GS homeobox 2 [Homo sapiens] 64 1e-10
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 64 2e-10
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 64 2e-10
gi|118582284 msh homeobox 1 [Homo sapiens] 63 3e-10
gi|27886557 msh homeobox 2 [Homo sapiens] 63 3e-10
gi|121114296 caudal type homeobox 1 [Homo sapiens] 63 3e-10
gi|23503237 homeobox B6 [Homo sapiens] 63 3e-10
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 63 3e-10
>gi|62865866 homeobox B13 [Homo sapiens]
Length = 284
Score = 598 bits (1542), Expect = e-171
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MEPGNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPP 60
MEPGNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPP
Sbjct: 1 MEPGNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPP 60
Query: 61 KQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPTAGEEY 120
KQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPTAGEEY
Sbjct: 61 KQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPTAGEEY 120
Query: 121 PSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNS 180
PSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNS
Sbjct: 121 PSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNS 180
Query: 181 QMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKF 240
QMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKF
Sbjct: 181 QMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKF 240
Query: 241 ITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSATP 284
ITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSATP
Sbjct: 241 ITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVKNSATP 284
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 251 bits (642), Expect = 4e-67
Identities = 138/246 (56%), Positives = 162/246 (65%), Gaps = 18/246 (7%)
Query: 54 PGSAEPPKQCHPCPGVPQGTS-PAPVPYGYFGGGYYSCR---VSRSSLKPCAQAATLAA- 108
P AE KQC PC Q +S PA +PYGYFG GYY C +++K CAQ A+ AA
Sbjct: 144 PAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCARMGPHPNAIKSCAQPASAAAA 203
Query: 109 ------YPAETPTAGEEYPSRPTEFAFY-PGYP-GTY---QPMASYLDVSVVQTLGAPGE 157
Y A EE+ SR EFAFY GY G Y QPM YLD+ VV LG PGE
Sbjct: 204 AAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGE 263
Query: 158 PRHDSL-LPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRG 216
RH+ L LP++SYQ WAL GWN QM C EQ P WK+ D HP DA ++RRG
Sbjct: 264 SRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPPHLWKSTLPDVVS-HPSDASSYRRG 322
Query: 217 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLA 276
RKKR+PY+K QL+ELEREYA NKFITKDKRR+ISA T+LSERQ+TIWFQNRRVKEKKV+
Sbjct: 323 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 382
Query: 277 KVKNSA 282
K+K ++
Sbjct: 383 KLKTTS 388
>gi|24497536 homeobox C13 [Homo sapiens]
Length = 330
Score = 238 bits (607), Expect = 4e-63
Identities = 134/281 (47%), Positives = 174/281 (61%), Gaps = 12/281 (4%)
Query: 3 PGNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPPKQ 62
PG ++DG + A R+L+ H P+ P AP P D+P + E +Q
Sbjct: 51 PGKAPSMDG---LGSSCPASHCRDLLPH-PVLGRPPAPLGAPQ-GAVYTDIP-APEAARQ 104
Query: 63 CHPCPGVPQGTSPAPVPYGY-FGGGYYSCRVSRS---SLKPCAQAATLAAYPAETPTAGE 118
C P P P +S A + YGY FGG YY CR+S + KPCA G+
Sbjct: 105 CAPPPAPPTSSS-ATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPGD 163
Query: 119 EYPSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGW 178
+ SR EFAFYP + +YQ M YLDVSVV + EPRHD+L+PV+ YQ WAL+ GW
Sbjct: 164 DLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALSNGW 223
Query: 179 NSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAAN 238
+SQ+ C EQ+ WK+ F D P + ++RRGRKKR+PY+K QL+ELE+EYAA+
Sbjct: 224 DSQVYCSKEQSQSAHLWKSPFPDVVPLQP-EVSSYRRGRKKRVPYTKVQLKELEKEYAAS 282
Query: 239 KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAKVK 279
KFITK+KRR+ISA T+LSERQ+TIWFQNRRVKEKKV++K K
Sbjct: 283 KFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSK 323
>gi|116734702 homeobox D13 [Homo sapiens]
Length = 343
Score = 218 bits (556), Expect = 4e-57
Identities = 115/247 (46%), Positives = 156/247 (63%), Gaps = 24/247 (9%)
Query: 57 AEPPKQCH-PCPGVPQGTSPAPVPYGY---FGGGYYSCRVS------RSSLKPCAQAATL 106
A P K+C P P P+ GY FG GYYSCR+S +++LK + A+L
Sbjct: 101 APPAKECPAPTPAAAAAAPPSAPALGYGYHFGNGYYSCRMSHGVGLQQNALK-SSPHASL 159
Query: 107 AAYPAE----------TPTAGEEYPSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPG 156
+P E + E P+R E +FY GY YQ + Y+D +V T G+ G
Sbjct: 160 GGFPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYTSPYQHVPGYID--MVSTFGS-G 216
Query: 157 EPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRG 216
EPRH++ + ++ YQSW LA GWNSQ+ C +Q FWK++F + PD C +RRG
Sbjct: 217 EPRHEAYISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDMCVYRRG 276
Query: 217 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLA 276
RKKR+PY+K QL+ELE EYA NKFI KDKRR+ISAAT+LSERQ+TIWFQNRRVK+KK+++
Sbjct: 277 RKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVS 336
Query: 277 KVKNSAT 283
K+K++ +
Sbjct: 337 KLKDTVS 343
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 87.8 bits (216), Expect = 1e-17
Identities = 80/272 (29%), Positives = 122/272 (44%), Gaps = 45/272 (16%)
Query: 15 IEGLLGAGGGRNLVAHSPLT-SHPAAPT---LMPAVNYAPLDLPGSAEPPKQC---HPCP 67
++ L+ L + P T +HPAA L+P + D P + PK
Sbjct: 12 VDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCS----DFPSCSFAPKPAVFSTSWA 67
Query: 68 GVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEF 127
VP +S PYG R R+ L+P + A + ++PA G Y +P
Sbjct: 68 PVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPA----GGRHYALKPDA- 122
Query: 128 AFYPGY-----PGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQM 182
YPG PG + Y+ G+PGE R + + S ++ ALAG + +
Sbjct: 123 --YPGRRADCGPGEGRSYPDYM-------YGSPGELRDRAPQTLPSPEADALAGSKHKEE 173
Query: 183 CCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFIT 242
+ + P W A R RKKR PY+K Q ELE+E+ N ++T
Sbjct: 174 KADLDPSNPVANWIHA---------------RSTRKKRCPYTKYQTLELEKEFLFNMYLT 218
Query: 243 KDKRRKISAATSLSERQITIWFQNRRVKEKKV 274
+D+R +++ +L+ERQ+ IWFQNRR+K KK+
Sbjct: 219 RDRRYEVARVLNLTERQVKIWFQNRRMKMKKM 250
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 82.8 bits (203), Expect = 3e-16
Identities = 81/272 (29%), Positives = 115/272 (42%), Gaps = 43/272 (15%)
Query: 15 IEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPPKQCHPCPGVPQGTS 74
I G L + ++++H S A P P+ YA PG AE + C P+
Sbjct: 3 ISGTLSSYYVDSIISHE---SEDAPPAKFPSGQYASSRQPGHAEH-LEFPSCSFQPK--- 55
Query: 75 PAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAY-PAETPTAGEEYPSRPTEFAFYPGY 133
APV FG + + L P A + + Y P P SR P
Sbjct: 56 -APV----FGASW-------APLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAP 103
Query: 134 PGTYQPMASYLDVSVVQTLGAPGE------PRHDSLLPVDSYQSWALAG---GWNSQMCC 184
G P V LGAPGE P + L + + L+ G+ C
Sbjct: 104 RGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYS--LETSAGREAVLSNQRPGYGDNKIC 161
Query: 185 QGEQNPPGPFWKAAFADSSGQHPPDA--CAFRRGRKKRIPYSKGQLRELEREYAANKFIT 242
+G ++ P Q P A R RKKR PY+K Q ELE+E+ N ++T
Sbjct: 162 EGSEDKERP----------DQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLT 211
Query: 243 KDKRRKISAATSLSERQITIWFQNRRVKEKKV 274
+D+R +++ +LSERQ+ IWFQNRR+K KK+
Sbjct: 212 RDRRHEVARLLNLSERQVKIWFQNRRMKMKKM 243
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 82.0 bits (201), Expect = 5e-16
Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 14/111 (12%)
Query: 175 AGGWNSQMCCQGEQNPPGPFWKAAFADSSG--QHPP---------DACAFRRGRKKRIPY 223
AGG C + PG K A S G + PP A A +R RKKR PY
Sbjct: 217 AGGGGGSPCTKAT---PGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQRSRKKRCPY 273
Query: 224 SKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKV 274
+K Q+RELERE+ N +I K+KR ++S +L++RQ+ IWFQNRR+KEKK+
Sbjct: 274 TKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 324
>gi|27804315 homeobox C12 [Homo sapiens]
Length = 282
Score = 81.3 bits (199), Expect = 9e-16
Identities = 77/250 (30%), Positives = 107/250 (42%), Gaps = 28/250 (11%)
Query: 43 MPAVNYAPLDLPGSAEPPKQCHPCPGVPQGTSPAPV----PYGYF--------GGGYYSC 90
+P+++Y D S P PC G PQ +PV P+G G GYY
Sbjct: 39 LPSLSYPRRDNVCSLSWPS-AEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYR- 96
Query: 91 RVSRSSLKPCAQAATLAAYPAET---PTAGEEYPSRPTEFAFYPGYPGTYQPMASYLDVS 147
+PCA+ E P AG P E + P Y A
Sbjct: 97 -------EPCAEGGGGGLKREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGD 149
Query: 148 VVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHP 207
G P +P L DS S G + G P A + +P
Sbjct: 150 GGGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYP 209
Query: 208 PDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNR 267
++ R RKKR PYSK QL ELE E+ N+FIT+ +RR++S +LS++Q+ IWFQNR
Sbjct: 210 INS----RSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNR 265
Query: 268 RVKEKKVLAK 277
R+K+K++L +
Sbjct: 266 RMKKKRLLLR 275
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 80.5 bits (197), Expect = 2e-15
Identities = 83/317 (26%), Positives = 121/317 (38%), Gaps = 47/317 (14%)
Query: 4 GNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTL-MPAVNYAPLDLPGSAEPPKQ 62
G + TL G ++ G+GGG + P+ L + A ++ P PP Q
Sbjct: 79 GLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQ 138
Query: 63 CHPCPGVPQGTSPAPVPYGYF-------GGGYYSCRVSRSSLKPCAQAATLAAYPAETPT 115
P P PQ PAP Y + K A AA LA +P P
Sbjct: 139 QQP-PPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPP 197
Query: 116 AG-----------EEYPSRPTEFAFYPGY-------------PGTYQPMASYLDVSVVQT 151
G Y + GY P QP D+
Sbjct: 198 DGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFPAQPPGRGFDLPPALA 257
Query: 152 LGAPGEPRHDSLLPVDSYQSWALAGGWNSQ-------MCCQGEQNPPGPFW-------KA 197
G+ R + L + A G SQ E+ P P K
Sbjct: 258 SGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPEKD 317
Query: 198 AFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSE 257
+ +S G++ + + GRKKR PY+K Q ELE+E+ N ++T+++R +IS + L++
Sbjct: 318 SLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTD 377
Query: 258 RQITIWFQNRRVKEKKV 274
RQ+ IWFQNRR+K KK+
Sbjct: 378 RQVKIWFQNRRMKLKKM 394
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 78.2 bits (191), Expect = 8e-15
Identities = 36/60 (60%), Positives = 48/60 (80%)
Query: 215 RGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKV 274
R RKKR PYSK Q+RELERE+ N +I K+KR ++S +L++RQ+ IWFQNRR+KEKK+
Sbjct: 231 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL 290
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 77.4 bits (189), Expect = 1e-14
Identities = 38/77 (49%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 201 DSSGQHPPDAC---AFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSE 257
+SS H D + +R RKKR PY+K Q+RELERE+ + +I K+KR ++S +L++
Sbjct: 223 ESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTD 282
Query: 258 RQITIWFQNRRVKEKKV 274
RQ+ IWFQNRR+KEKK+
Sbjct: 283 RQVKIWFQNRRMKEKKI 299
>gi|194353946 homeobox D12 [Homo sapiens]
Length = 270
Score = 77.0 bits (188), Expect = 2e-14
Identities = 71/244 (29%), Positives = 100/244 (40%), Gaps = 28/244 (11%)
Query: 43 MPAVNYAPLDLPGSAEPPKQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQ 102
+P ++Y LP +A P P PY G G + + P Q
Sbjct: 39 LPPISYPRGALPWAATPASCAPAQPAGATAFGGFSQPY-LAGSGPLGLQPPTAKDGPEEQ 97
Query: 103 AATLAAYPAETPTA-GEEYPSRPTEFAFYPGYPGTYQPMASYLDV------SVVQTLGAP 155
A A A P G PS E + P Y V S GAP
Sbjct: 98 AKFYAPEAAAGPEERGRTRPSFAPESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAP 157
Query: 156 GEP--RHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAF 213
P + D+ P++ + AG C P G W AA
Sbjct: 158 CAPGFKDDTKGPLNLNMTVQAAG----VASCLRPSLPDGLPWGAAPG------------- 200
Query: 214 RRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 273
R RKKR PY+K Q+ ELE E+ N+FI + KR+++S +LS++Q+ IWFQNRR+K+K+
Sbjct: 201 -RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKR 259
Query: 274 VLAK 277
V+ +
Sbjct: 260 VVLR 263
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 74.7 bits (182), Expect = 9e-14
Identities = 77/279 (27%), Positives = 110/279 (39%), Gaps = 50/279 (17%)
Query: 31 SPLTSHPAAPTLMPAVNYA---PLDLPGSAEPPKQ-----CHPCPGVPQGTS-------- 74
S + S P A M + + P L SA P + P PG P G
Sbjct: 80 SAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGG 139
Query: 75 -----PAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPTAGE---EYPSRPTE 126
P+P P G G +Y +KP +AA A A T ++ S+ TE
Sbjct: 140 GPGRGPSPGPSGPANGRHYG-------IKPETRAAPAPATAASTTSSSSTSLSSSSKRTE 192
Query: 127 FAFYPGYPGTYQP---MASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMC 183
+ G+ P S+L G G P + GG +
Sbjct: 193 CSVARESQGSSGPEFSCNSFLQEKAAAATGGTG--------PGAGIGAATGTGGSSEPSA 244
Query: 184 CQGEQNPPGPFWKAAFADSSGQH----PPDACA----FRRGRKKRIPYSKGQLRELEREY 235
C P + S Q P + A R RKKR PY+K Q ELE+E+
Sbjct: 245 CSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEF 304
Query: 236 AANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKV 274
N ++T+D+R +++ +L+ERQ+ IWFQNRR+K KK+
Sbjct: 305 LFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 74.3 bits (181), Expect = 1e-13
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 201 DSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQI 260
+S G++ + + GRKKR PY+K Q ELE+E+ N ++T+++R +IS + L++RQ+
Sbjct: 5 NSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQV 64
Query: 261 TIWFQNRRVKEKKV 274
IWFQNRR+K KK+
Sbjct: 65 KIWFQNRRMKLKKM 78
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 72.4 bits (176), Expect = 4e-13
Identities = 31/61 (50%), Positives = 48/61 (78%)
Query: 214 RRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 273
+ GRKKR PY+K Q ELE+E+ N ++T+++R +IS + +L++RQ+ IWFQNRR+K KK
Sbjct: 264 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 323
Query: 274 V 274
+
Sbjct: 324 M 324
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 71.6 bits (174), Expect = 7e-13
Identities = 31/61 (50%), Positives = 46/61 (75%)
Query: 214 RRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 273
R RKKR PY+K Q ELE+E+ N ++T+D+R +++ +L+ERQ+ IWFQNRR+K KK
Sbjct: 204 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 263
Query: 274 V 274
+
Sbjct: 264 I 264
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 71.6 bits (174), Expect = 7e-13
Identities = 31/61 (50%), Positives = 47/61 (77%)
Query: 214 RRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 273
+ GRKKR PY+K Q ELE+E+ N ++T+++R +IS +L++RQ+ IWFQNRR+K KK
Sbjct: 266 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKK 325
Query: 274 V 274
+
Sbjct: 326 M 326
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 67.4 bits (163), Expect = 1e-11
Identities = 69/261 (26%), Positives = 107/261 (40%), Gaps = 29/261 (11%)
Query: 20 GAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPPKQCHPCPGVPQGTSPAPVP 79
GAGGG + T+ P + P AP P C P P G+ PA
Sbjct: 135 GAGGGGRVERDRGQTAAGRDP-VHPLGTRAPGAASLLCAPDANCGP----PDGSQPAAAG 189
Query: 80 YGYFGGGYYSCRVSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAFYPGYPGTYQP 139
G G + + ++ A AA AA P++T G A PG GT P
Sbjct: 190 AGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGG------AGSPGAQGTKYP 243
Query: 140 MASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAF 199
+ + +++ A G P ++ DS Q W + + C + P +
Sbjct: 244 --EHGNPAILLMGSANGGP----VVKTDSQQPLV----WPAWVYCTRYSDRPSSGPRTRK 293
Query: 200 ADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQ 259
D ++ R ++ QL+ L+ E+ AN++IT+ +R+ ++ SL+E Q
Sbjct: 294 LKKKKNEKED-------KRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQ 346
Query: 260 ITIWFQNRRVKEKKVLAKVKN 280
I IWFQN+R K KK +KN
Sbjct: 347 IKIWFQNKRAKIKKATG-IKN 366
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 67.0 bits (162), Expect = 2e-11
Identities = 69/260 (26%), Positives = 96/260 (36%), Gaps = 33/260 (12%)
Query: 18 LLGAGGGRNLVA--HSPLTSHPAAPTLMPAVNYAPLDLPGSAEPPKQCH-PCPGVPQGTS 74
LL G G +L P H + NY +DL + H G
Sbjct: 21 LLNYGSGSSLSGSYRDPAAMHTGSY----GYNYNGMDLSVNRSSASSSHFGAVGESSRAF 76
Query: 75 PAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAYP-AETPTAGEEYPSRPTEFAFYPGY 133
PAP F SC +S PC + A P A +P+ S F
Sbjct: 77 PAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSPSDQATSASSSANFTEIDEA 136
Query: 134 PGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGP 193
+ +P + +S A EP S + Q P
Sbjct: 137 SASSEPEEAASQLSSPSLARAQPEPMATSTAAPEG-------------------QTPQIF 177
Query: 194 FWKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT 253
W S PD G++ R Y++ Q ELE+E+ N+++T+ +R +I+ A
Sbjct: 178 PWMRKLHISHDMTGPD------GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL 231
Query: 254 SLSERQITIWFQNRRVKEKK 273
LSERQI IWFQNRR+K KK
Sbjct: 232 CLSERQIKIWFQNRRMKWKK 251
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 65.1 bits (157), Expect = 7e-11
Identities = 29/60 (48%), Positives = 45/60 (75%)
Query: 215 RGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKV 274
+ RK+R ++K QLRELE E+A + ++T+ +R +I+ LSERQ+ +WFQNRR+K K+V
Sbjct: 55 KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV 114
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 65.1 bits (157), Expect = 7e-11
Identities = 29/60 (48%), Positives = 45/60 (75%)
Query: 215 RGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKV 274
+ RK+R ++K QLRELE E+A + ++T+ +R +I+ LSERQ+ +WFQNRR+K K+V
Sbjct: 170 KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV 229
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 64.7 bits (156), Expect = 9e-11
Identities = 63/210 (30%), Positives = 92/210 (43%), Gaps = 28/210 (13%)
Query: 82 YFGGGYYSCRVSRSSLKP----CAQAATLAAYPAET--PTAGE--EYPSRPTEFAFYPGY 133
YF +S + SL+P C A L P P++G ++PS+ EF Y G
Sbjct: 4 YFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEF--YHG- 60
Query: 134 PGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGP 193
P + + V G PG + D Q +L G + + +
Sbjct: 61 PSSLSTAPYQQNPCAVACHGDPG-----NFYGYDPLQRQSLFGAQDPDLVQYADCKLAAA 115
Query: 194 FWKAAFADSSGQHP----------PDACAFRRGRKKRIPYSKGQLRELEREYAANKFITK 243
A+ S Q P P A A RR + R YS+ Q ELE+E+ N ++T+
Sbjct: 116 SGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRR--RGRQTYSRYQTLELEKEFLFNPYLTR 173
Query: 244 DKRRKISAATSLSERQITIWFQNRRVKEKK 273
+R ++S A L+ERQ+ IWFQNRR+K KK
Sbjct: 174 KRRIEVSHALGLTERQVKIWFQNRRMKWKK 203
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 64.3 bits (155), Expect = 1e-10
Identities = 29/65 (44%), Positives = 46/65 (70%)
Query: 209 DACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRR 268
DA G++ R ++ QL ELERE+++N ++++ +R +I+ +LSE+Q+ IWFQNRR
Sbjct: 195 DASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRR 254
Query: 269 VKEKK 273
VK KK
Sbjct: 255 VKHKK 259
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 63.5 bits (153), Expect = 2e-10
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 195 WKAAFADSSGQHPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATS 254
WK +A + P+ ++ R Y++ QL ELE+E+ NK+I++ +R +++ +
Sbjct: 130 WKGQWAGGAYAAEPE-----ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLN 184
Query: 255 LSERQITIWFQNRRVKEKKVLAKVKNSAT 283
L+ER I IWFQNRR+K KK K + T
Sbjct: 185 LTERHIKIWFQNRRMKWKKEEDKKRGGGT 213
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 63.5 bits (153), Expect = 2e-10
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 18/171 (10%)
Query: 110 PAETPTAGEEYPSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRHDSLLPVDSY 169
P P E +PS P E Y + A S + G+ G+ D L +
Sbjct: 165 PPPPPHFSETFPSLPAEGKVYSSDEEKLEASAGDPAGSEQEEEGSGGDSEDDGFLDSSAG 224
Query: 170 QSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFR----RGRKKRIPYSK 225
AL G P P K + + + P + R++R ++
Sbjct: 225 GPGALLG--------------PKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAFTS 270
Query: 226 GQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLA 276
QL ELE+E+ K+++ +R +I+ A LSE Q+ IWFQNRR K K++ A
Sbjct: 271 EQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKA 321
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 63.2 bits (152), Expect = 3e-10
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 7/84 (8%)
Query: 208 PDACAFRR---GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWF 264
P AC R+ RK R P++ QL LER++ ++++ +R + S++ SL+E Q+ IWF
Sbjct: 161 PPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWF 220
Query: 265 QNRRVKEKKV----LAKVKNSATP 284
QNRR K K++ L K+K +A P
Sbjct: 221 QNRRAKAKRLQEAELEKLKMAAKP 244
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 63.2 bits (152), Expect = 3e-10
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 37/176 (21%)
Query: 142 SYLDVSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQG----EQNPPGPFWK- 196
S L SV + P+ S LP +S A AG + G E + PGP K
Sbjct: 43 SSLPFSVEALMSDKKPPKEASPLPAES----ASAGATLRPLLLSGHGAREAHSPGPLVKP 98
Query: 197 --------------AAFADSSGQHPPD-------ACAFRR---GRKKRIPYSKGQLRELE 232
AA+ G++ P C R+ RK R P++ QL LE
Sbjct: 99 FETASVKSENSEDGAAWMQEPGRYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALE 158
Query: 233 REYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKV----LAKVKNSATP 284
R++ ++++ +R + S++ +L+E Q+ IWFQNRR K K++ L K+K +A P
Sbjct: 159 RKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKP 214
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 63.2 bits (152), Expect = 3e-10
Identities = 66/259 (25%), Positives = 93/259 (35%), Gaps = 57/259 (22%)
Query: 32 PLTSHPAAPTLMPAVNYAPLDLPGSAEPP-----KQCHPCPGVPQGT-SPAPVPYGYFGG 85
P + PA+ L P P P + P P P P +P P P +
Sbjct: 15 PGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFPAPKDDWAA 74
Query: 86 GYYSCRVSRSSLKPCAQAATLAAYPAETPTAGEEYPSRPTEFAFYPGYPGTYQPMASYLD 145
Y P A A+LA P P +F+ P PG +
Sbjct: 75 AY-----GPGPAAPAASPASLAFGP-------------PPDFSPVPAPPGPGPGL----- 111
Query: 146 VSVVQTLGAPGEPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQ 205
+ Q LG PG P G Q P W + G
Sbjct: 112 --LAQPLGGPGTPSSP------------------------GAQRPTPYEWMRRSVAAGGG 145
Query: 206 HPPDACAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQ 265
R K R+ Y+ Q ELE+E+ +++IT ++ +++A L+ERQ+ IWFQ
Sbjct: 146 GGSGKT--RTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQ 203
Query: 266 NRRVKEKKVLAKVKNSATP 284
NRR KE+KV K + P
Sbjct: 204 NRRAKERKVNKKKQQQQQP 222
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 63.2 bits (152), Expect = 3e-10
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 22/171 (12%)
Query: 104 ATLAAYPAETPTAGEEYPSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPR-HDS 162
AT + YP P G + P ++ P + Y+ S +S GA +P H
Sbjct: 54 ATSSYYP---PAGGGYGRAAPCDYGPAPAF---YREKESACALS-----GADEQPPFHPE 102
Query: 163 LLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRKKRIP 222
D Q ++ G Q C P P+ + + +S P GR+ R
Sbjct: 103 PRKSDCAQDKSVFGETEEQKC----STPVYPWMQRMNSCNSSSFGPS------GRRGRQT 152
Query: 223 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 273
Y++ Q ELE+E+ N+++T+ +R +I+ A L+ERQI IWFQNRR+K KK
Sbjct: 153 YTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 203
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 62.8 bits (151), Expect = 3e-10
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 156 GEPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFAD------SSGQHPPD 209
G P S PV S +L + C PG + + A + S G+ D
Sbjct: 116 GPPELGSSPPVLCSNSSSLGSSTPTGAACA-----PGDYGRQALSPAEAEKRSGGKRKSD 170
Query: 210 ACAFRRG----------RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQ 259
+ + G RK+R ++K Q+RELE E+A + ++T+ +R +I+ L+ERQ
Sbjct: 171 SSDSQEGNYKSEVNSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQ 230
Query: 260 ITIWFQNRRVKEKKV 274
+ +WFQNRR+K K+V
Sbjct: 231 VKVWFQNRRMKWKRV 245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,183,059
Number of Sequences: 37866
Number of extensions: 840788
Number of successful extensions: 3502
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 2904
Number of HSP's gapped (non-prelim): 764
length of query: 284
length of database: 18,247,518
effective HSP length: 101
effective length of query: 183
effective length of database: 14,423,052
effective search space: 2639418516
effective search space used: 2639418516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.