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Search of human proteins with 62632765
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62632765 N-methylpurine-DNA glycosylase isoform b [Homo
sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62632765 N-methylpurine-DNA glycosylase isoform b [Homo sapiens] 597 e-171
gi|62632769 N-methylpurine-DNA glycosylase isoform a [Homo sapiens] 584 e-167
gi|62632771 N-methylpurine-DNA glycosylase isoform c [Homo sapiens] 572 e-163
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 35 0.060
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 35 0.060
gi|150378549 tangerin [Homo sapiens] 35 0.10
gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens] 35 0.10
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens] 34 0.13
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 34 0.13
gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 34 0.13
gi|149274614 melanoma antigen family D, 4 [Homo sapiens] 34 0.13
gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog ... 32 0.51
gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog ... 32 0.51
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 32 0.51
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.87
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 31 1.5
gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 31 1.5
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 1.5
gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens] 31 1.5
gi|38683851 round spermatid basic protein 1 [Homo sapiens] 31 1.5
gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens] 30 1.9
gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo ... 30 1.9
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 30 1.9
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 30 1.9
gi|24497460 Shaw-related voltage-gated potassium channel protein... 30 1.9
gi|116812624 tau tubulin kinase 2 [Homo sapiens] 30 1.9
gi|157785645 SPEG complex locus [Homo sapiens] 30 1.9
gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens] 30 2.5
gi|169168296 PREDICTED: hypothetical protein [Homo sapiens] 30 2.5
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 30 2.5
>gi|62632765 N-methylpurine-DNA glycosylase isoform b [Homo sapiens]
Length = 293
Score = 597 bits (1540), Expect = e-171
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP 60
MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP
Sbjct: 1 MPARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPP 60
Query: 61 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE 120
TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE
Sbjct: 61 TTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETE 120
Query: 121 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE 180
AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE
Sbjct: 121 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALE 180
Query: 181 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE 240
PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE
Sbjct: 181 PLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLE 240
Query: 241 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 293
RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
Sbjct: 241 RGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 293
>gi|62632769 N-methylpurine-DNA glycosylase isoform a [Homo sapiens]
Length = 298
Score = 584 bits (1505), Expect = e-167
Identities = 286/286 (100%), Positives = 286/286 (100%)
Query: 8 QFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYR 67
QFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYR
Sbjct: 13 QFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYR 72
Query: 68 SIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPED 127
SIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPED
Sbjct: 73 SIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPED 132
Query: 128 EAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLET 187
EAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLET
Sbjct: 133 EAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLET 192
Query: 188 MRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPS 247
MRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPS
Sbjct: 193 MRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPS 252
Query: 248 EPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 293
EPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
Sbjct: 253 EPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 298
>gi|62632771 N-methylpurine-DNA glycosylase isoform c [Homo sapiens]
Length = 281
Score = 572 bits (1475), Expect = e-163
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 13 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 72
MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS
Sbjct: 1 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 60
Query: 73 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 132
SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS
Sbjct: 61 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 120
Query: 133 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 192
RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR
Sbjct: 121 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 180
Query: 193 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 252
STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV
Sbjct: 181 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 240
Query: 253 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 293
AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
Sbjct: 241 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 281
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 35.4 bits (80), Expect = 0.060
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 20 PARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLT 79
PA + P +++ A AP + P S+ AQ P P L P PGP+ P G +
Sbjct: 43 PASSSDPAAAAAATAAPGQTPASAQAPAQTPAP---ALPGPALPGPF-------PGGRVV 92
Query: 80 RL 81
RL
Sbjct: 93 RL 94
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 35.4 bits (80), Expect = 0.060
Identities = 39/154 (25%), Positives = 54/154 (35%), Gaps = 36/154 (23%)
Query: 27 HSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEFF 86
HS+++ A+ E DA P R P PGP P G L R+ L
Sbjct: 961 HSAAEEAEPEPELAAPGEDAEPQAGPSARGSPSPAAPGP--------PAGPLPRMDLPLA 1012
Query: 87 DQ------------------------PAVPLARAFLGQVLVRRLPNGTE--LRGRIVETE 120
Q P VP A G L R+ G E R+++ +
Sbjct: 1013 GQPLRHPTRARPRPRRQHHHRPPPGGPQVPPALPQEGNGLSARVDEGVEEFFSKRLIQQD 1072
Query: 121 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY 154
PE++ A G TP R + K GTL+ +
Sbjct: 1073 RLWAPEEDPATEGGA--TPVPRTLRKKLGTLFAF 1104
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 34.7 bits (78), Expect = 0.10
Identities = 40/151 (26%), Positives = 50/151 (33%), Gaps = 38/151 (25%)
Query: 12 RMGQKKQRPARAGQPHSSSDAAQAPAEQ------PHSSSDAAQAPCPRERCLGPPTTPGP 65
R K+ RAG+ SS Q AEQ + A P RC G P P
Sbjct: 401 REANTKRSGVRAGEAEESSAVCQVDAEQRSKVRHVDTKGPEATGVMPEARCRGTPEAP-- 458
Query: 66 YRSIYFSSPKGHLTRLGLEFFDQ--------PAVPLARAFLGQVLVRRLPNGTELRGRIV 117
P+G RLG+ D+ PA P + GQ+ G +
Sbjct: 459 --------PRGSQGRLGVRTRDEAPSGLSLPPAEPAGHS--GQL------------GDLE 496
Query: 118 ETEAYLGPEDEAAHSRGGRQTPRNRGMFMKP 148
A G E E A RGG G+ P
Sbjct: 497 GARAAAGQEREGAEVRGGAPGIEGTGLEQGP 527
>gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens]
Length = 697
Score = 34.7 bits (78), Expect = 0.10
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 158 GMYFCMNISSQGDGACVL-LRALEPLEGLETM-----RQLRSTLRKGTASRVLKDRELCS 211
G Y C + G L L P E L M R + L GT+ VL+ + LC
Sbjct: 319 GRYTCRAENRLGSQQRALDLSVQYPPENLRVMVSQANRTVLENLGNGTSLPVLEGQSLC- 377
Query: 212 GPSKLCQALAINKSFDQRDLAQDEAVWLERG----PLEPSEPAVVAAARVGVGHAGEW-- 265
+ + S L+ W +RG P +PS+P V+ RV V H GE+
Sbjct: 378 -------LVCVTHSSPPARLS-----WTQRGQVLSPSQPSDPGVLELPRVQVEHEGEFTC 425
Query: 266 -ARKPL 270
AR PL
Sbjct: 426 HARHPL 431
>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
Length = 739
Score = 34.3 bits (77), Expect = 0.13
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 18 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 75
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 76 G 76
G
Sbjct: 243 G 243
>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 34.3 bits (77), Expect = 0.13
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 18 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 75
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 76 G 76
G
Sbjct: 243 G 243
>gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 34.3 bits (77), Expect = 0.13
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 18 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 75
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 76 G 76
G
Sbjct: 243 G 243
>gi|149274614 melanoma antigen family D, 4 [Homo sapiens]
Length = 739
Score = 34.3 bits (77), Expect = 0.13
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 18 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 75
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 76 G 76
G
Sbjct: 243 G 243
>gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 2 [Homo sapiens]
Length = 548
Score = 32.3 bits (72), Expect = 0.51
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 14 GQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSS 73
GQ Q A A P A APA P S AQAP P P PGP +++ +
Sbjct: 368 GQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAP-----VPVLAPGPPQAVAPPA 422
Query: 74 PK 75
PK
Sbjct: 423 PK 424
>gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 1 [Homo sapiens]
Length = 551
Score = 32.3 bits (72), Expect = 0.51
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 14 GQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSS 73
GQ Q A A P A APA P S AQAP P P PGP +++ +
Sbjct: 371 GQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAP-----VPVLAPGPPQAVAPPA 425
Query: 74 PK 75
PK
Sbjct: 426 PK 427
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 32.3 bits (72), Expect = 0.51
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 2 PARSGAQFCRRMGQKKQRPARAGQPHSSSDAAQAPA---EQPHSSSDAAQAPCPRERCLG 58
P++S Q + ++ PA P +S QAP QPHS S P P ++
Sbjct: 212 PSQSQQQPLQPTPPQQPPPASQQPPAPTSQLQQAPQPQQHQPHSHSQNQNQPSPTQQSSS 271
Query: 59 PPTTP 63
PP P
Sbjct: 272 PPQKP 276
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 31.6 bits (70), Expect = 0.87
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 33 AQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSP 74
A AP PH + APCP + P TTP P ++P
Sbjct: 549 ASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATP 590
Score = 30.8 bits (68), Expect = 1.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 22 RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPG 64
RAG S+ +++ PA +P +S +AP + GP ++PG
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPG 118
>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]
Length = 498
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 6 GAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 65
G + C+ G+K + + G+ S+S + H S++ +AP P L PP P P
Sbjct: 347 GLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVP----LLPPLPPPP 402
>gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens]
Length = 486
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 6 GAQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 65
G + C+ G+K + + G+ S+S + H S++ +AP P L PP P P
Sbjct: 335 GLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVP----LLPPLPPPP 390
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 30.8 bits (68), Expect = 1.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 22 RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPG 64
RAG S+ +++ PA +P +S +AP + GP ++PG
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPG 118
>gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]
Length = 440
Score = 30.8 bits (68), Expect = 1.5
Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 32/117 (27%)
Query: 26 PHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEF 85
P S S +A P PH Q P P +R + P G L G+
Sbjct: 272 PGSPSHSAPDPDGLPHFMETPLQPPPPVQRVMDP----------------GFLDVSGISL 315
Query: 86 FDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPED----EAAHSRGGRQT 138
D + + LP+ TEL V T GPED ++H RGG T
Sbjct: 316 LDNSNASVWPS---------LPSSTELTTTAVSTS---GPEDICSSSSSHERGGEAT 360
>gi|38683851 round spermatid basic protein 1 [Homo sapiens]
Length = 802
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 14 GQKKQRPARAG--QPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYF 71
G K+QR + +G Q + + P PH + Q P P PT PGP +
Sbjct: 84 GVKRQRRSSSGGSQEKRGRPSQEPPLAPPHRRRRSRQHPGPLPPTNAAPTVPGPVEPLLL 143
Query: 72 SSP 74
P
Sbjct: 144 PPP 146
>gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens]
Length = 719
Score = 30.4 bits (67), Expect = 1.9
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 14 GQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSS 73
G K P AG+ S D A+ P QP + + P PR CL P G +R+ S
Sbjct: 417 GPTKPLPWTAGK--HSEDGAR-PRLQPSKNDPPSLRPMPRGSCLPCPCVQGTFRNSPISH 473
Query: 74 P 74
P
Sbjct: 474 P 474
>gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo
sapiens]
Length = 396
Score = 30.4 bits (67), Expect = 1.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 22 RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 65
R G + +D + E+ H+ + P PR C GP PGP
Sbjct: 254 RPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGP 297
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 30.4 bits (67), Expect = 1.9
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 26 PHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEF 85
P +++A + P + P +S PRE P P P S + +P GH LGL
Sbjct: 1024 PAFAAEAQKLPGDPPCWTSGLPFPVPPREVIKASPHAPDP--SAFSYAPPGHPLPLGLHD 1081
Query: 86 FDQPAVP 92
+P +P
Sbjct: 1082 TARPVLP 1088
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 30.4 bits (67), Expect = 1.9
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 26 PHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEF 85
P +++A + P + P +S PRE P P P S + +P GH LGL
Sbjct: 1040 PAFAAEAQKLPGDPPCWTSGLPFPVPPREVIKASPHAPDP--SAFSYAPPGHPLPLGLHD 1097
Query: 86 FDQPAVP 92
+P +P
Sbjct: 1098 TARPVLP 1104
>gi|24497460 Shaw-related voltage-gated potassium channel protein
3 [Homo sapiens]
Length = 757
Score = 30.4 bits (67), Expect = 1.9
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 7 AQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 65
+ F R G KQ+PA QP S P +Q + P P GPP GP
Sbjct: 8 SSFRGRQGASKQQPAPPPQPPESPPPPPLPPQQQQPAQ-----PGPAASPAGPPAPRGP 61
>gi|116812624 tau tubulin kinase 2 [Homo sapiens]
Length = 1244
Score = 30.4 bits (67), Expect = 1.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 20 PARAGQPH-----SSSDAAQAPAEQPHSSSDAAQAPCPRERC 56
P+RAG+PH SS ++ + HS S +++ C +E C
Sbjct: 1168 PSRAGRPHHDQRSSSPHLGRSKSPPSHSGSSSSRRSCQQEHC 1209
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 30.4 bits (67), Expect = 1.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 25 QPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 65
QP +S+A + PA+ P S S P PR +G + PGP
Sbjct: 287 QPQLASEAPRRPAQPPPSKSALLPPPSPR---VGKRSPPGP 324
>gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 632
Score = 30.0 bits (66), Expect = 2.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 11 RRMGQKKQRPA--RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 65
RR G K++ P RAG S ++ PA Q + D+A P PP +P P
Sbjct: 130 RRRGPKREGPRGPRAGGAQGPSGPSELPAAQGRLAPDSAGEGAPGRE---PPASPAP 183
>gi|169168296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 30.0 bits (66), Expect = 2.5
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 19 RPARAGQPHSSSDAAQAPAEQ---PHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPK 75
R A A P +A PA + P S Q+PC RE P TP RS Y P+
Sbjct: 234 RLASAQLPQGLPRSAGLPAREQPPPTQSRGRLQSPCAREASTSPALTP---RSQYPKRPQ 290
Query: 76 G 76
G
Sbjct: 291 G 291
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 30.0 bits (66), Expect = 2.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 11 RRMGQKKQRPA--RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 65
RR G K++ P RAG S ++ PA Q + D+A P PP +P P
Sbjct: 425 RRRGPKREGPRGPRAGGAQGPSGPSEPPAAQGRLAPDSAGEGAPGRE---PPASPAP 478
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,122,731
Number of Sequences: 37866
Number of extensions: 700443
Number of successful extensions: 3317
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 3217
Number of HSP's gapped (non-prelim): 179
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.