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Name: ATP2A1 Sequence: fasta or formatted (1001aa) NCBI GI: 27886529
Description:

ATPase, Ca++ transporting, fast twitch 1 isoform a

Referenced in:

Sodium, Potassium, and Calcium Membrane ATPases

Other entries for this name:
alt prot [994aa] ATPase, Ca++ transporting, fast twitch 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         91           3
 C cysteine            2.4         24           2
 D aspartate           5.3         53           2
 E glutamate           7.9         79           2
 F phenylalanine       3.6         36           2
 G glycine             6.7         67           2
 H histidine           0.9          9           1
 I isoleucine          7.0         70           2
 K lysine              5.3         53           2
 L leucine             9.7         97           3
 M methionine          2.9         29           1
 N asparagine          3.8         38           2
 P proline             4.6         46           2
 Q glutamine           2.3         23           2
 R arginine            5.1         51           2
 S serine              5.0         50           2
 T threonine           6.4         64           2
 V valine              8.5         85           2
 W tryptophan          1.3         13           2
 Y tyrosine            2.3         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase, Ca++ transporting, fast twitch 1 isoform a [... 
ATP2A1                0.991   ATPase, Ca++ transporting, fast twitch 1 isoform b [...
ATP2A2                0.849   ATPase, Ca++ transporting, slow twitch 2 isoform 2 [H...
ATP2A2                0.849   ATPase, Ca++ transporting, slow twitch 2 isoform 1 [...
ATP2A2                0.818   ATPase, Ca++ transporting, slow twitch 2 isoform 3 ...
ATP2A3                0.774   ATPase, Ca++ transporting, ubiquitous isoform a [Hom...
ATP2A3                0.773   ATPase, Ca++ transporting, ubiquitous isoform f [Hom...
ATP2A3                0.773   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.773   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.773   ATPase, Ca++ transporting, ubiquitous isoform b [Hom...
ATP2A3                0.773   ATPase, Ca++ transporting, ubiquitous isoform d [Hom...
ATP2A3                0.773   ATPase, Ca++ transporting, ubiquitous isoform e [Hom...
LOC100294460          0.577   PREDICTED: similar to ATPase, Ca++ transporting, fa...
ATP2C1                0.221   calcium-transporting ATPase 2C1 isoform 1b 
ATP2C1                0.221   calcium-transporting ATPase 2C1 isoform 1d 
ATP2C1                0.221   calcium-transporting ATPase 2C1 isoform 1a 
ATP2C1                0.216   calcium-transporting ATPase 2C1 isoform 1c 
ATP2C2                0.212   ATPase, Ca++ transporting, type 2C, member 2 
ATP1A4                0.172   Na+/K+ -ATPase alpha 4 subunit isoform 1 
ATP1A2                0.171   Na+/K+ -ATPase alpha 2 subunit proprotein 
ATP1A3                0.170   Na+/K+ -ATPase alpha 3 subunit 
ATP4A                 0.169   hydrogen/potassium-exchanging ATPase 4A 
ATP1A1                0.168   Na+/K+ -ATPase alpha 1 subunit isoform c 
ATP1A1                0.168   Na+/K+ -ATPase alpha 1 subunit isoform d 
ATP1A1                0.168   Na+/K+ -ATPase alpha 1 subunit isoform a 
ATP12A                0.157   hydrogen/potassium-exchanging ATPase 12A 
ATP2B2                0.140   plasma membrane calcium ATPase 2 isoform 2 
ATP2B4                0.138   plasma membrane calcium ATPase 4 isoform 4a 
ATP2B4                0.138   plasma membrane calcium ATPase 4 isoform 4b 
ATP2B1                0.137   plasma membrane calcium ATPase 1 isoform 1a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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