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Search of human proteins with 62530388
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62530388 mitochondrial ribosomal protein L22 isoform b [Homo
sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62530388 mitochondrial ribosomal protein L22 isoform b [Homo ... 259 5e-70
gi|21265040 mitochondrial ribosomal protein L22 isoform a [Homo ... 259 5e-70
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens] 31 0.22
gi|38683840 CD96 antigen isoform 1 precursor [Homo sapiens] 29 0.83
gi|5032141 CD96 antigen isoform 2 precursor [Homo sapiens] 29 0.83
gi|29558099 protein phosphatase 1B isoform 3 [Homo sapiens] 29 0.83
gi|4505995 protein phosphatase 1B isoform 1 [Homo sapiens] 29 0.83
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 29 0.83
gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo sap... 29 1.1
gi|149363674 hypothetical protein LOC25758 [Homo sapiens] 29 1.1
gi|7657461 phospholipase A2, group IIE [Homo sapiens] 29 1.1
gi|88703045 proline rich 11 [Homo sapiens] 29 1.1
gi|18079216 CASK interacting protein 1 [Homo sapiens] 28 1.8
gi|110349719 titin isoform N2-A [Homo sapiens] 28 1.8
gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo sap... 28 1.8
gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo sap... 28 1.8
gi|117938310 sine oculis binding protein homolog [Homo sapiens] 28 1.8
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 2.4
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 2.4
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 2.4
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 27 3.2
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 27 3.2
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 27 3.2
gi|31543397 phosphoglycerate kinase 2 [Homo sapiens] 27 3.2
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s... 27 3.2
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 27 3.2
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 27 3.2
gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens] 27 3.2
gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens] 27 3.2
gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens] 27 4.1
>gi|62530388 mitochondrial ribosomal protein L22 isoform b [Homo
sapiens]
Length = 126
Score = 259 bits (661), Expect = 5e-70
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAEST 60
MWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAEST
Sbjct: 1 MWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAEST 60
Query: 61 SGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHAKEYIQQLRSR 120
SGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHAKEYIQQLRSR
Sbjct: 61 SGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHAKEYIQQLRSR 120
Query: 121 TIVHTL 126
TIVHTL
Sbjct: 121 TIVHTL 126
>gi|21265040 mitochondrial ribosomal protein L22 isoform a [Homo
sapiens]
Length = 206
Score = 259 bits (661), Expect = 5e-70
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAEST 60
MWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAEST
Sbjct: 81 MWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAEST 140
Query: 61 SGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHAKEYIQQLRSR 120
SGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHAKEYIQQLRSR
Sbjct: 141 SGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHAKEYIQQLRSR 200
Query: 121 TIVHTL 126
TIVHTL
Sbjct: 201 TIVHTL 206
>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 31.2 bits (69), Expect = 0.22
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 55 YIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPPPEPPKTAVAHAK 111
Y+A G R+R G+ + CH + E PPPPP P T A ++
Sbjct: 142 YVAGDLGASGAVSARVRARASLALGL--PIQCHRHIS-TEPPPPPPAAPATGSAQSR 195
>gi|38683840 CD96 antigen isoform 1 precursor [Homo sapiens]
Length = 585
Score = 29.3 bits (64), Expect = 0.83
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 78 FGIMEKVYCHYFVKLVEGPPP--PPEPP 103
FG+ + +C Y +++E PPP PP PP
Sbjct: 536 FGLGVRKWCQYQKEIMERPPPFKPPPPP 563
>gi|5032141 CD96 antigen isoform 2 precursor [Homo sapiens]
Length = 569
Score = 29.3 bits (64), Expect = 0.83
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 78 FGIMEKVYCHYFVKLVEGPPP--PPEPP 103
FG+ + +C Y +++E PPP PP PP
Sbjct: 520 FGLGVRKWCQYQKEIMERPPPFKPPPPP 547
>gi|29558099 protein phosphatase 1B isoform 3 [Homo sapiens]
Length = 192
Score = 29.3 bits (64), Expect = 0.83
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 57 AESTSGRG---QCLKRIRYHGRGRFG-IMEKVYCHYFVKLVEGPPPPPEPPKTAVA 108
AE + +G + L+++R + RG + ++E++ Y + VEG P EP TA +
Sbjct: 96 AEESGSQGKLVEALRQMRINHRGNYRQLLEEMLTSYRLAKVEGEESPAEPAATATS 151
>gi|4505995 protein phosphatase 1B isoform 1 [Homo sapiens]
Length = 479
Score = 29.3 bits (64), Expect = 0.83
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 57 AESTSGRG---QCLKRIRYHGRGRFG-IMEKVYCHYFVKLVEGPPPPPEPPKTAVA 108
AE + +G + L+++R + RG + ++E++ Y + VEG P EP TA +
Sbjct: 383 AEESGSQGKLVEALRQMRINHRGNYRQLLEEMLTSYRLAKVEGEESPAEPAATATS 438
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 29.3 bits (64), Expect = 0.83
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 96 PPPPPEPP-----KTAVAHAKEYIQQLRSR 120
PPPPPEPP + + HAKE +++ R
Sbjct: 289 PPPPPEPPTESAWERGLRHAKEVLKKATIR 318
>gi|239743040 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 28.9 bits (63), Expect = 1.1
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 64 GQCLKRIRYHGRGRFGIMEKVYCHYFVKLVE--GPPPPPEPPKTAVAHAKE 112
G+ L RI G G FGI E V +F L + G PPP P K +K+
Sbjct: 259 GEGLLRIE-SGDGTFGISENVDAAFFCFLRDPSGASPPPLPLKACCERSKD 308
>gi|149363674 hypothetical protein LOC25758 [Homo sapiens]
Length = 1855
Score = 28.9 bits (63), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 91 KLVEGPPPPPEPPKT---AVAHAKEYIQQLRSRT 121
++V G PPPP PP+T AVA + + S+T
Sbjct: 1638 EMVMGSPPPPVPPRTGPVAVASLRRSTSDIGSKT 1671
>gi|7657461 phospholipase A2, group IIE [Homo sapiens]
Length = 142
Score = 28.9 bits (63), Expect = 1.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 65 QCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPPP 99
+C KR R G + Y HY KL GP PP
Sbjct: 107 ECDKRAALCFRRNLGTYNRKYAHYPNKLCTGPTPP 141
>gi|88703045 proline rich 11 [Homo sapiens]
Length = 360
Score = 28.9 bits (63), Expect = 1.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 82 EKVYCHYFVKLVEGPPPPPEPPKTAVA 108
+K H+ KL+ PPPPP P + ++
Sbjct: 21 KKEASHFQSKLITPPPPPPSPERVGIS 47
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 28.1 bits (61), Expect = 1.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 96 PPPPPEPPKTAVAH 109
PPPP EPP T +AH
Sbjct: 1194 PPPPAEPPPTDLAH 1207
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 28.1 bits (61), Expect = 1.8
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 96 PPPPPEPPKTAVAHAKEYIQQLRS 119
PPPPP PPK V KE I QL++
Sbjct: 10882 PPPPPAPPKEDV---KEKIFQLKA 10902
>gi|239754466 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 28.1 bits (61), Expect = 1.8
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 74 GRGRFGIMEKVYCHYFVKLVE--GPPPPPEPPKTAVAHAKE 112
G G FGI E V +F L + G PPP P K +K+
Sbjct: 268 GDGTFGISENVEAAFFCFLRDPSGASPPPLPLKACCERSKD 308
>gi|239749021 PREDICTED: hypothetical protein LOC401287 [Homo
sapiens]
Length = 573
Score = 28.1 bits (61), Expect = 1.8
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 74 GRGRFGIMEKVYCHYFVKLVE--GPPPPPEPPKTAVAHAKE 112
G G FGI E V +F L + G PPP P K +K+
Sbjct: 268 GDGTFGISENVEAAFFCFLRDPSGASPPPLPLKACCERSKD 308
>gi|117938310 sine oculis binding protein homolog [Homo sapiens]
Length = 873
Score = 28.1 bits (61), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 96 PPPPPEPPKTAVAHAKEYIQQLRS 119
PPPPP PPK ++ + + +L S
Sbjct: 747 PPPPPAPPKKLLSPEEPAVSELES 770
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 27.7 bits (60), Expect = 2.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 96 PPPPPEPPKTAVA 108
PPPPP+PPK +A
Sbjct: 1612 PPPPPQPPKAELA 1624
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 27.7 bits (60), Expect = 2.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 96 PPPPPEPPKTAVA 108
PPPPP+PPK +A
Sbjct: 1528 PPPPPQPPKAELA 1540
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 27.7 bits (60), Expect = 2.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 96 PPPPPEPPKTAVA 108
PPPPP+PPK +A
Sbjct: 1528 PPPPPQPPKAELA 1540
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 91 KLVEGPPPPPEPPKTAVAHAKEYIQQLR 118
KL +GPPP P PP T Q LR
Sbjct: 162 KLGKGPPPRPAPPGTRCCPGARAAQLLR 189
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 91 KLVEGPPPPPEPPKTAVAHAKEYIQQLR 118
KL +GPPP P PP T Q LR
Sbjct: 162 KLGKGPPPRPAPPGTRCCPGARAAQLLR 189
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 91 KLVEGPPPPPEPPKTAVAHAKEYIQQLR 118
KL +GPPP P PP T Q LR
Sbjct: 162 KLGKGPPPRPAPPGTRCCPGARAAQLLR 189
>gi|31543397 phosphoglycerate kinase 2 [Homo sapiens]
Length = 417
Score = 27.3 bits (59), Expect = 3.2
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 6 KLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVR 44
K++ M I +L D++GAKI+K+++ +AQ VR
Sbjct: 246 KVLNNMEIGASLF-----DEEGAKIVKDIMAKAQKNGVR 279
>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
sapiens]
Length = 468
Score = 27.3 bits (59), Expect = 3.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 97 PPPPEPPKTAVAHAKEYIQQLRSRT 121
PP PEPP +H ++ + QL +R+
Sbjct: 170 PPSPEPPGALASHDQDTLAQLLARS 194
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 27.3 bits (59), Expect = 3.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 97 PPPPEPPKTAVAHAKEYIQQLRSRT 121
PP PEPP +H ++ + QL +R+
Sbjct: 263 PPSPEPPGALASHDQDTLAQLLARS 287
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 27.3 bits (59), Expect = 3.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 94 EGPPPPPEPPKTAVAHAKEYIQQLRS 119
+ PPPP +PP + K+Y + L+S
Sbjct: 446 QAPPPPQQPPTAPPSGLKKYEEPLQS 471
>gi|164698460 mannosidase, endo-alpha-like isoform 3 [Homo sapiens]
Length = 457
Score = 27.3 bits (59), Expect = 3.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 96 PPPPPEPPKTA 106
PPPPP PP+TA
Sbjct: 68 PPPPPPPPRTA 78
>gi|72534766 mannosidase, endo-alpha-like isoform 1 [Homo sapiens]
Length = 250
Score = 27.3 bits (59), Expect = 3.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 96 PPPPPEPPKTA 106
PPPPP PP+TA
Sbjct: 68 PPPPPPPPRTA 78
>gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens]
Length = 1139
Score = 26.9 bits (58), Expect = 4.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 94 EGPPPPPEPPKTAVAHAKE 112
+ PPPPP PP A + +E
Sbjct: 7 QSPPPPPPPPAAAASDEEE 25
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,558,894
Number of Sequences: 37866
Number of extensions: 266936
Number of successful extensions: 4380
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4065
Number of HSP's gapped (non-prelim): 278
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.