Guide to the Human Genome
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Name: CD96 Sequence: fasta or formatted (569aa) NCBI GI: 5032141
Description:

CD96 antigen isoform 2 precursor

Referenced in:

Additional Immunoglobulin-related Receptors

Other entries for this name:
alt prot [585aa] CD96 antigen isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         20           2
 C cysteine            2.5         14           2
 D aspartate           3.5         20           2
 E glutamate           6.2         35           2
 F phenylalanine       3.9         22           2
 G glycine             4.7         27           1
 H histidine           2.5         14           1
 I isoleucine          6.3         36           2
 K lysine              6.0         34           2
 L leucine             7.2         41           2
 M methionine          1.8         10           1
 N asparagine          5.6         32           2
 P proline             6.7         38           5
 Q glutamine           3.3         19           1
 R arginine            3.3         19           2
 S serine             10.4         59           3
 T threonine           9.5         54           2
 V valine              7.6         43           2
 W tryptophan          2.1         12           1
 Y tyrosine            3.5         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD96 antigen isoform 2 precursor 
CD96                  0.991   CD96 antigen isoform 1 precursor 
CD226                 0.025   CD226 molecule precursor 
ALCAM                 0.024   activated leukocyte cell adhesion molecule 
PVRL3                 0.024   poliovirus receptor-related 3 
LOC100131514          0.019   PREDICTED: similar to hCG1747327, partial 
LOC100294420          0.018   PREDICTED: similar to mucin 2 
BCAM                  0.017   basal cell adhesion molecule isoform 2 precursor [Ho...
BCAM                  0.017   basal cell adhesion molecule isoform 1 precursor [Ho...
MUC3A                 0.016   PREDICTED: mucin 3A, intestinal 
LOC100130716          0.015   PREDICTED: similar to mucin 11 
LOC100130716          0.015   PREDICTED: similar to Mucin-12 
MUC12                 0.015   PREDICTED: mucin 12 
CD86                  0.015   CD86 antigen isoform 2 precursor 
CD86                  0.015   CD86 antigen isoform 1 
MUC12                 0.015   PREDICTED: mucin 12, cell surface associated 
MUC3B                 0.015   PREDICTED: mucin 3B, cell surface associated, parti...
MUC4                  0.014   mucin 4 isoform a 
MUC17                 0.014   mucin 17 
AGER                  0.014   advanced glycosylation end product-specific receptor...
AGER                  0.014   advanced glycosylation end product-specific receptor...
ANKRD36               0.014   PREDICTED: ankyrin repeat domain 36 
MUC16                 0.013   mucin 16 
LOC100133790          0.013   PREDICTED: intestinal mucin-like, partial 
MUC5B                 0.012   mucin 5, subtype B, tracheobronchial 
MUC2                  0.012   mucin 2 precursor 
PVRL1                 0.012   poliovirus receptor-related 1 isoform 3 
PVRL1                 0.012   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.012   poliovirus receptor-related 1 isoform 1 
MUC5AC                0.012   mucin 5AC 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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