Search of human proteins with 62510076

Search of human proteins with 62510076

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|62510076 hypothetical protein LOC90835 [Homo sapiens]
         (294 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|62510076 hypothetical protein LOC90835 [Homo sapiens]              603   e-173
gi|91176323 hypothetical protein LOC203076 [Homo sapiens]              52   6e-07
gi|157738665 poly (ADP-ribose) polymerase family, member 10 [Hom...    44   2e-04
gi|40254891 hypothetical protein FLJ20674 [Homo sapiens]               37   0.021
gi|112789536 troponin T3, skeletal, fast isoform 3 [Homo sapiens]      36   0.035
gi|112789541 troponin T3, skeletal, fast isoform 4 [Homo sapiens]      36   0.035
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]       36   0.035
gi|48255883 troponin T type 2, cardiac isoform 4 [Homo sapiens]        36   0.046
gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens]        36   0.046
gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens]        36   0.046
gi|48255877 troponin T type 2, cardiac isoform 1 [Homo sapiens]        36   0.046
gi|81295809 pericentrin [Homo sapiens]                                 35   0.060
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]         35   0.10 
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap...    34   0.13 
gi|55741709 RNA binding motif protein 25 [Homo sapiens]                34   0.18 
gi|112789538 troponin T3, skeletal, fast isoform 2 [Homo sapiens]      34   0.18 
gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sap...    34   0.18 
gi|221139761 zinc finger protein 853 [Homo sapiens]                    33   0.23 
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              33   0.23 
gi|131889097 cancer susceptibility candidate 1 isoform b [Homo s...    33   0.23 
gi|131889447 cancer susceptibility candidate 1 isoform c [Homo s...    33   0.23 
gi|131888105 cancer susceptibility candidate 1 isoform a [Homo s...    33   0.23 
gi|5803203 troponin T3, skeletal, fast isoform 1 [Homo sapiens]        33   0.30 
gi|154354979 myosin X [Homo sapiens]                                   33   0.30 
gi|50511945 cajalin 2 isoform a [Homo sapiens]                         33   0.30 
gi|10047134 cajalin 2 isoform c [Homo sapiens]                         33   0.30 
gi|155030232 proline, glutamic acid and leucine rich protein 1 [...    33   0.39 
gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo sap...    33   0.39 
gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo sap...    33   0.39 
gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo sap...    33   0.39 

>gi|62510076 hypothetical protein LOC90835 [Homo sapiens]
          Length = 294

 Score =  603 bits (1554), Expect = e-173
 Identities = 294/294 (100%), Positives = 294/294 (100%)

Query: 1   MASYSGFSGLLEIRYGPGHRSCLPQFAFFPQPPLPRPRICMWKYLDVHSMHQLEKTTNAE 60
           MASYSGFSGLLEIRYGPGHRSCLPQFAFFPQPPLPRPRICMWKYLDVHSMHQLEKTTNAE
Sbjct: 1   MASYSGFSGLLEIRYGPGHRSCLPQFAFFPQPPLPRPRICMWKYLDVHSMHQLEKTTNAE 60

Query: 61  MREVLAELLELGCPEQSLRDAITLDLFCHALIFCRQQGFSLEQTSAACALLQDLHKACIA 120
           MREVLAELLELGCPEQSLRDAITLDLFCHALIFCRQQGFSLEQTSAACALLQDLHKACIA
Sbjct: 61  MREVLAELLELGCPEQSLRDAITLDLFCHALIFCRQQGFSLEQTSAACALLQDLHKACIA 120

Query: 121 TPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALEDYVVNTYFRHFKLYKYVFT 180
           TPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALEDYVVNTYFRHFKLYKYVFT
Sbjct: 121 TPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALEDYVVNTYFRHFKLYKYVFT 180

Query: 181 PQVRLDLSLTYMGLQPPKLWPESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHV 240
           PQVRLDLSLTYMGLQPPKLWPESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHV
Sbjct: 181 PQVRLDLSLTYMGLQPPKLWPESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHV 240

Query: 241 LRAYIKTQVNKELEQLQGLVEERLKASEERLSSKLTALERPFQLPPGKGKSKTK 294
           LRAYIKTQVNKELEQLQGLVEERLKASEERLSSKLTALERPFQLPPGKGKSKTK
Sbjct: 241 LRAYIKTQVNKELEQLQGLVEERLKASEERLSSKLTALERPFQLPPGKGKSKTK 294


>gi|91176323 hypothetical protein LOC203076 [Homo sapiens]
          Length = 294

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 56/250 (22%)

Query: 75  EQSLRDAITLDLFCHALIFCRQQGFSLEQTSAACALLQDL---HKACIATP----LGNVE 127
           ++  R +I LD    ++IF   +GF   + +      ++L    K C  T     LGN  
Sbjct: 36  QRDSRRSILLDTLYESIIFAVGKGFPWVEVAQVVKFTEELLRETKGCSITEAVTILGNKL 95

Query: 128 ECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALEDYVVNTYFRHFKLYKYVFTPQVRLDL 187
             YR                    F    LLAL DY  +T+ RH+KLY+YV     ++DL
Sbjct: 96  RDYRGH------------------FNTTHLLALCDYFHHTFIRHYKLYQYVLGQDQQVDL 137

Query: 188 SLTYMGL-QPPKLWPESE----------------TEEEESKEME----EQAVTPQKEE-- 224
           ++ ++ +  PP   P +E                TE E  K  +    ++A+  ++E   
Sbjct: 138 TVAHLEVCMPPHPLPLAEGMDRDLWIHEQQVATLTEAEAQKRADVLLLKEALRLERENSL 197

Query: 225 ---LETVAPPEP-EPSHIHVLRAYIKTQVNKELEQLQGLVEERLKAS----EERLSSKLT 276
                  AP +P +      L + I   V+ ++E LQ L++ +++ +    + +L  K  
Sbjct: 198 QKAFAAAAPAQPGQVLERQELESLICQAVHTQMELLQELLQRQIQNTFAILDLKLQKKTL 257

Query: 277 ALERPFQLPP 286
            L  P  +PP
Sbjct: 258 NLNAPTPIPP 267


>gi|157738665 poly (ADP-ribose) polymerase family, member 10 [Homo
           sapiens]
          Length = 1025

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 200 WPESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGL 259
           W   E EEE  +E  E+ VTP  EE E VAP    P  +    A ++  +++ LE  QG 
Sbjct: 612 WLPRELEEEGPQEQPEEEVTPGHEEEEPVAPSTVAPRWLEE-EAALQLALHRSLEP-QGQ 669

Query: 260 VEERLKASEERLSSKLTALERP 281
           V E+ +A+  R +  L+ LE+P
Sbjct: 670 VAEQEEAAALRQALTLSLLEQP 691


>gi|40254891 hypothetical protein FLJ20674 [Homo sapiens]
          Length = 540

 Score = 37.0 bits (84), Expect = 0.021
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 202 ESETEEEESKEMEEQAVTPQKE---ELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQG 258
           +SE EEEE +E EE A   ++E   E E +    P+  HIH + A     VN  +EQ+  
Sbjct: 461 DSEEEEEEEEEEEEDAAVGEQEGAREREELPKEIPKQDHIHRVTAL----VNGNIEQMGN 516

Query: 259 LVEERLKASEERLSSKLTALERP 281
             ++    S E  S  +   +RP
Sbjct: 517 GFQDLQDDSSEEQSDIVQEEDRP 539


>gi|112789536 troponin T3, skeletal, fast isoform 3 [Homo sapiens]
          Length = 250

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 202 ESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGLVE 261
           E + EEEE  + EE+    +K   +  AP  PE   +       K Q NK+L +LQ L++
Sbjct: 10  EEQYEEEEEAQEEEEVQEEEKPRPKLTAPKIPEGEKVDFDDIQKKRQ-NKDLMELQALID 68

Query: 262 ERLKASEERLSSKLTALER 280
              +A ++     +   ER
Sbjct: 69  SHFEARKKEEEELVALKER 87


>gi|112789541 troponin T3, skeletal, fast isoform 4 [Homo sapiens]
          Length = 250

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 202 ESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGLVE 261
           E + EEEE  + EE+    +K   +  AP  PE   +       K Q NK+L +LQ L++
Sbjct: 10  EEQYEEEEEAQEEEEVQEEEKPRPKLTAPKIPEGEKVDFDDIQKKRQ-NKDLMELQALID 68

Query: 262 ERLKASEERLSSKLTALER 280
              +A ++     +   ER
Sbjct: 69  SHFEARKKEEEELVALKER 87


>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
          Length = 340

 Score = 36.2 bits (82), Expect = 0.035
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 186 DLSLTYMGLQPPKLWPESETEEEESK-EMEEQAVTPQKEELETVAPPEPEP 235
           DLSL+  G       PE   +E  SK E+ ++A   Q   LE+ APPEP P
Sbjct: 86  DLSLSPGGESKANCSPEDPCQETVSKPEVSKEATADQGSRLESAAPPEPAP 136


>gi|48255883 troponin T type 2, cardiac isoform 4 [Homo sapiens]
          Length = 282

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 202 ESETEEEESKE-----MEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQL 256
           E + EEEE+KE     MEE    P+      V P  P+   +     + K ++ K+L +L
Sbjct: 39  EEDEEEEEAKEAEDGPMEESKPKPRSFMPNLVPPKIPDGERVDFDDIHRK-RMEKDLNEL 97

Query: 257 QGLVE---ERLKASEERLSSKLTALER 280
           Q L+E   E  K  EE L S    +ER
Sbjct: 98  QALIEAHFENRKKEEEELVSLKDRIER 124


>gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens]
          Length = 285

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 202 ESETEEEESKE-----MEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQL 256
           E + EEEE+KE     MEE    P+      V P  P+   +     + K ++ K+L +L
Sbjct: 44  EEDEEEEEAKEAEDGPMEESKPKPRSFMPNLVPPKIPDGERVDFDDIHRK-RMEKDLNEL 102

Query: 257 QGLVE---ERLKASEERLSSKLTALER 280
           Q L+E   E  K  EE L S    +ER
Sbjct: 103 QALIEAHFENRKKEEEELVSLKDRIER 129


>gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens]
          Length = 288

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 202 ESETEEEESKE-----MEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQL 256
           E + EEEE+KE     MEE    P+      V P  P+   +     + K ++ K+L +L
Sbjct: 44  EEDEEEEEAKEAEDGPMEESKPKPRSFMPNLVPPKIPDGERVDFDDIHRK-RMEKDLNEL 102

Query: 257 QGLVE---ERLKASEERLSSKLTALER 280
           Q L+E   E  K  EE L S    +ER
Sbjct: 103 QALIEAHFENRKKEEEELVSLKDRIER 129


>gi|48255877 troponin T type 2, cardiac isoform 1 [Homo sapiens]
          Length = 295

 Score = 35.8 bits (81), Expect = 0.046
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 202 ESETEEEESKE-----MEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQL 256
           E + EEEE+KE     MEE    P+      V P  P+   +     + K ++ K+L +L
Sbjct: 54  EEDEEEEEAKEAEDGPMEESKPKPRSFMPNLVPPKIPDGERVDFDDIHRK-RMEKDLNEL 112

Query: 257 QGLVE---ERLKASEERLSSKLTALER 280
           Q L+E   E  K  EE L S    +ER
Sbjct: 113 QALIEAHFENRKKEEEELVSLKDRIER 139


>gi|81295809 pericentrin [Homo sapiens]
          Length = 3336

 Score = 35.4 bits (80), Expect = 0.060
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 18/91 (19%)

Query: 198 KLWPE---SETEEEESKEMEEQ--AVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKE 252
           +LW +   + T  +E  E+ EQ  A T + E+LE +   E             KTQ   E
Sbjct: 469 RLWSQLDSARTSRQELSELHEQLLARTSRVEDLEQLKQRE-------------KTQHESE 515

Query: 253 LEQLQGLVEERLKASEERLSSKLTALERPFQ 283
           LEQL+   E++L+ +E+     LT L++  Q
Sbjct: 516 LEQLRIYFEKKLRDAEKTYQEDLTLLQQRLQ 546


>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
          Length = 224

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 201 PESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAY 244
           P+ + E+EE +E EE+    ++EE E  APP P       LR Y
Sbjct: 41  PDDDEEDEEEEEEEEEEEEEEEEEEEEEAPPPPRVVSEEHLRRY 84


>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
           sapiens]
          Length = 528

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 195 QPPKLWPESETEEEESKEMEEQAVTPQKEELETVAPPEPEP 235
           QPP     +E EEEE +E EE+A   ++EE    APP   P
Sbjct: 304 QPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEEAPPPLSP 344


>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
          Length = 843

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 4/35 (11%)

Query: 201 PESETEEEESKEMEEQAVTPQKEELETVAPPEPEP 235
           PESE EEEE +E EE+   P +EE E    PE +P
Sbjct: 581 PESEEEEEEKQEKEEKREEPMEEEEE----PEQKP 611


>gi|112789538 troponin T3, skeletal, fast isoform 2 [Homo sapiens]
          Length = 256

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 195 QPPKLWPESETEEEESKEMEEQAVTPQ-KEELETVAPPEPEPSHIHVLRAYIKTQVNKEL 253
           Q  + + E E  +EE+ E+ E+   P+ K   +  AP  PE   +       K Q NK+L
Sbjct: 8   QVEEQYEEEEEAQEEAAEVHEEVHEPEEKPRPKLTAPKIPEGEKVDFDDIQKKRQ-NKDL 66

Query: 254 EQLQGLVEERLKASEERLSSKLTALER 280
            +LQ L++   +A ++     +   ER
Sbjct: 67  MELQALIDSHFEARKKEEEELVALKER 93


>gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo
           sapiens]
          Length = 525

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 195 QPPKLWPESETEEEESKEMEEQAVTPQKEELETVAPPEPEPS 236
           QPP     +E EEEE +E EE+A   ++EE   V   +P+P+
Sbjct: 304 QPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEVQGEQPKPA 345


>gi|221139761 zinc finger protein 853 [Homo sapiens]
          Length = 659

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 12/92 (13%)

Query: 194 LQPPKLWPESETEEEESKEM-----EEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQ 248
           LQPP L PE E EE E + M      EQ +  Q++ELE     E +       +  ++ +
Sbjct: 307 LQPPPLEPEEE-EEVELELMPVDLGSEQELEQQRQELERQQELERQQE-----QRQLQLK 360

Query: 249 VNKELEQL-QGLVEERLKASEERLSSKLTALE 279
           + +EL+QL Q L +++ +  ++ +  +LT +E
Sbjct: 361 LQEELQQLEQQLEQQQQQLEQQEVQLELTPVE 392


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 201  PESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGLV 260
            PESE  E    E E Q  T   E LET    EPE        A    Q  +   Q +  V
Sbjct: 1901 PESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESEV 1960

Query: 261  EERLKASEERL--SSKLTALERPFQLPPGKGKSK 292
             E  +A EE    S  + ALE   +    +G+++
Sbjct: 1961 IESQEAEEEAQPESEDVEALEVEVETQEAEGEAQ 1994


>gi|131889097 cancer susceptibility candidate 1 isoform b [Homo
           sapiens]
          Length = 716

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 204 ETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGLVEER 263
           E EE   KE EE  +  +KEE+E +     E    H L A    + N+ELE+L  L  ER
Sbjct: 20  EEEERRLKEEEEARLKYEKEEMERLEIQRIEKEKWHRLEAKDLERRNEELEELYLL--ER 77

Query: 264 LKASEERLSSKLTALER 280
                E+L  +   L +
Sbjct: 78  CFPEAEKLKQETKLLSQ 94


>gi|131889447 cancer susceptibility candidate 1 isoform c [Homo
           sapiens]
          Length = 690

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 204 ETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGLVEER 263
           E EE   KE EE  +  +KEE+E +     E    H L A    + N+ELE+L  L  ER
Sbjct: 84  EEEERRLKEEEEARLKYEKEEMERLEIQRIEKEKWHRLEAKDLERRNEELEELYLL--ER 141

Query: 264 LKASEERLSSKLTALER 280
                E+L  +   L +
Sbjct: 142 CFPEAEKLKQETKLLSQ 158


>gi|131888105 cancer susceptibility candidate 1 isoform a [Homo
           sapiens]
          Length = 722

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 204 ETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGLVEER 263
           E EE   KE EE  +  +KEE+E +     E    H L A    + N+ELE+L  L  ER
Sbjct: 26  EEEERRLKEEEEARLKYEKEEMERLEIQRIEKEKWHRLEAKDLERRNEELEELYLL--ER 83

Query: 264 LKASEERLSSKLTALER 280
                E+L  +   L +
Sbjct: 84  CFPEAEKLKQETKLLSQ 100


>gi|5803203 troponin T3, skeletal, fast isoform 1 [Homo sapiens]
          Length = 258

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 202 ESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGLVE 261
           E++ EEE  ++  E+    +K   +  AP  PE   +       K Q NK+L +LQ L++
Sbjct: 18  EAQEEEEVQEDTAEEDAEEEKPRPKLTAPKIPEGEKVDFDDIQKKRQ-NKDLMELQALID 76

Query: 262 ERLKASEERLSSKLTALER 280
              +A ++     +   ER
Sbjct: 77  SHFEARKKEEEELVALKER 95


>gi|154354979 myosin X [Homo sapiens]
          Length = 2058

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 163 YVVNTYFRHFKLYKYVFTPQVRLDLSL-TYMGLQPPKLWPES----ETEEEESKEMEEQA 217
           +++   F H K    VF  Q+R  ++   Y  L   K   E     E EE++ +E EE+ 
Sbjct: 779 FLLRRRFLHLKKAAIVFQKQLRGQIARRVYRQLLAEKREQEEKKKQEEEEKKKREEEERE 838

Query: 218 VTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKEL-EQLQGLVEERLKASEERLSSKLT 276
              ++ E E  A  E E      L A  K+Q   EL  +L+   E +      RL  ++ 
Sbjct: 839 RERERREAELRAQQEEETRKQQELEALQKSQKEAELTRELEKQKENKQVEEILRLEKEIE 898

Query: 277 ALER 280
            L+R
Sbjct: 899 DLQR 902


>gi|50511945 cajalin 2 isoform a [Homo sapiens]
          Length = 1248

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 11   LEIRYGPGHRSCLPQ-FAFFPQPPLPRPRICMWKYLD-VHSMHQLEKTTNAEMREVL 65
            L+ R G GH S LP+ F   P  P+P+PR+ + K +D +H+ H  ++ +     E L
Sbjct: 1190 LQARKG-GHSSTLPESFENKPSKPIPKPRVSIRKSVDLLHASHTGQEPSERHTEEAL 1245


>gi|10047134 cajalin 2 isoform c [Homo sapiens]
          Length = 414

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 11  LEIRYGPGHRSCLPQ-FAFFPQPPLPRPRICMWKYLD-VHSMHQLEKTTNAEMREVL 65
           L+ R G GH S LP+ F   P  P+P+PR+ + K +D +H+ H  ++ +     E L
Sbjct: 356 LQARKG-GHSSTLPESFENKPSKPIPKPRVSIRKSVDLLHASHTGQEPSERHTEEAL 411


>gi|155030232 proline, glutamic acid and leucine rich protein 1
           [Homo sapiens]
          Length = 1130

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 203 SETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGLVEE 262
           S  EEEE +E EE+    ++EE E     E +           + +  +E E+ +G +EE
Sbjct: 885 SSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEE 944

Query: 263 RLKASEERLSSKLTALE 279
             +  +E    +L  +E
Sbjct: 945 EEEEEDEEEEEELEEVE 961


>gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo
           sapiens]
          Length = 594

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 202 ESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIH---VLRAYIKTQVNKELEQLQG 258
           E E EEEE KE EE+    + EE    A P   P  I    +L  +   Q+    E+L+ 
Sbjct: 264 EDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLISQEALLHQHHCPQLEALQEKLRL 323

Query: 259 LVEERLKASEERLSSKLTALERPFQL 284
           L EE  +  EE  +S+L  LE   Q+
Sbjct: 324 LEEENHQLREE--ASQLDTLEDEEQM 347


>gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo
           sapiens]
          Length = 602

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 202 ESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIH---VLRAYIKTQVNKELEQLQG 258
           E E EEEE KE EE+    + EE    A P   P  I    +L  +   Q+    E+L+ 
Sbjct: 272 EDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLISQEALLHQHHCPQLEALQEKLRL 331

Query: 259 LVEERLKASEERLSSKLTALERPFQL 284
           L EE  +  EE  +S+L  LE   Q+
Sbjct: 332 LEEENHQLREE--ASQLDTLEDEEQM 355


>gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo
           sapiens]
          Length = 619

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 202 ESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIH---VLRAYIKTQVNKELEQLQG 258
           E E EEEE KE EE+    + EE    A P   P  I    +L  +   Q+    E+L+ 
Sbjct: 264 EDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLISQEALLHQHHCPQLEALQEKLRL 323

Query: 259 LVEERLKASEERLSSKLTALERPFQL 284
           L EE  +  EE  +S+L  LE   Q+
Sbjct: 324 LEEENHQLREE--ASQLDTLEDEEQM 347


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,447,155
Number of Sequences: 37866
Number of extensions: 669952
Number of successful extensions: 5696
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 4913
Number of HSP's gapped (non-prelim): 705
length of query: 294
length of database: 18,247,518
effective HSP length: 101
effective length of query: 193
effective length of database: 14,423,052
effective search space: 2783649036
effective search space used: 2783649036
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.