Guide to the Human Genome
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Name: PTDSS2 Sequence: fasta or formatted (487aa) NCBI GI: 13540555
Description:

phosphatidylserine synthase 2

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         23           2
 C cysteine            2.1         10           1
 D aspartate           5.5         27           2
 E glutamate           5.3         26           2
 F phenylalanine       6.0         29           2
 G glycine             7.8         38           2
 H histidine           2.1         10           1
 I isoleucine          4.3         21           2
 K lysine              4.3         21           2
 L leucine            11.9         58           2
 M methionine          2.3         11           1
 N asparagine          2.7         13           1
 P proline             6.8         33           2
 Q glutamine           3.1         15           1
 R arginine            5.1         25           2
 S serine              3.9         19           2
 T threonine           6.6         32           1
 V valine              6.8         33           2
 W tryptophan          4.7         23           2
 Y tyrosine            4.1         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylserine synthase 2 
PTDSS1                0.206   phosphatidylserine synthase 1 
SLAIN2                0.009   SLAIN motif family, member 2 
PRR12                 0.008   proline rich 12 
DDX51                 0.008   DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 
FOXQ1                 0.007   forkhead box Q1 
POU5F1                0.006   POU domain, class 5, transcription factor 1 isoform ...
LOC100128074          0.006   PREDICTED: hypothetical protein 
COL4A1                0.006   alpha 1 type IV collagen preproprotein 
ZNF428                0.005   zinc finger protein 428 
LOC100293994          0.005   PREDICTED: hypothetical protein 
LOC100288305          0.005   PREDICTED: hypothetical protein 
ARID1A                0.005   AT rich interactive domain 1A isoform a 
ESPN                  0.005   espin 
KLF15                 0.005   Kruppel-like factor 15 
FLJ22184              0.005   PREDICTED: hypothetical protein FLJ22184 
LOC728163             0.005   PREDICTED: hypothetical protein 
FLJ22184              0.005   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.005   PREDICTED: hypothetical protein LOC80164 
WIPF1                 0.005   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.005   WAS/WASL interacting protein family, member 1 
OR2L13                0.005   olfactory receptor, family 2, subfamily L, member 13...
COLQ                  0.005   acetylcholinesterase collagen-like tail subunit iso...
COLQ                  0.005   acetylcholinesterase collagen-like tail subunit isof...
COLQ                  0.005   acetylcholinesterase collagen-like tail subunit isof...
PRKD2                 0.005   protein kinase D2 isoform A 
PRKD2                 0.005   protein kinase D2 isoform A 
PRKD2                 0.005   protein kinase D2 isoform A 
COL4A4                0.005   alpha 4 type IV collagen precursor 
ZNF513                0.005   zinc finger protein 513 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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