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Search of human proteins with 60593054
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|60593054 hypothetical protein LOC494514 [Homo sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|60593054 hypothetical protein LOC494514 [Homo sapiens] 262 4e-71
gi|52145312 hypothetical protein LOC118611 [Homo sapiens] 40 4e-04
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 40 6e-04
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 38 0.002
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 38 0.002
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 38 0.002
gi|40805108 putative small membrane protein NID67 [Homo sapiens] 38 0.002
gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo sapi... 36 0.006
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 36 0.008
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 36 0.008
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 35 0.019
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 35 0.019
gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens] 34 0.032
gi|241982780 programmed cell death 6 interacting protein isoform... 33 0.042
gi|22027538 programmed cell death 6 interacting protein isoform ... 33 0.042
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 33 0.042
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 33 0.054
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 33 0.054
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 33 0.054
gi|40254851 protein kinase PKNbeta [Homo sapiens] 33 0.054
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 0.071
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 33 0.071
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.071
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 33 0.071
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.071
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 33 0.071
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.071
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 0.071
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 33 0.071
gi|134244285 Notch homolog 3 [Homo sapiens] 32 0.093
>gi|60593054 hypothetical protein LOC494514 [Homo sapiens]
Length = 123
Score = 262 bits (670), Expect = 4e-71
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MTPASGATASLGRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPL 60
MTPASGATASLGRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPL
Sbjct: 1 MTPASGATASLGRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPL 60
Query: 61 PGRIEVRTKRGPQRPAAPERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPCG 120
PGRIEVRTKRGPQRPAAPERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPCG
Sbjct: 61 PGRIEVRTKRGPQRPAAPERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPCG 120
Query: 121 RPS 123
RPS
Sbjct: 121 RPS 123
>gi|52145312 hypothetical protein LOC118611 [Homo sapiens]
Length = 699
Score = 40.0 bits (92), Expect = 4e-04
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 19 RSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEVRTKRGPQRPA-A 77
+SR + A LP A+ +RA H R LPGR+ + PA +
Sbjct: 62 KSRENRASLPLPCAIAQSRAHHAKQSLANRSGVNIHRAFALLPGRLGI--------PAPS 113
Query: 78 PERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRI 111
ER P+ LPP GPRR + + A R+
Sbjct: 114 DERGPEAELPPKEERPCGGPRRGFASITITARRV 147
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 39.7 bits (91), Expect = 6e-04
Identities = 36/101 (35%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 18 PRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEVRTKRGPQRPAA 77
PR R AA L A+AA R S P G + PLP ++ R P PAA
Sbjct: 60 PRERPAAARLSALAAAQPRRRSPGPQGGGGGDIAS------PLPPALQPRG--APAVPAA 111
Query: 78 PERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCP 118
P P P P S PS P + S PA P G R P
Sbjct: 112 PSPGPLPARPSSPPPSPPSPPVPTAQSSLPAPWPPQGPRSP 152
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 38.1 bits (87), Expect = 0.002
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 53 ARRTMRPLPGRIEVRTKRGPQRPA-----------APERSPQPRLPPSRH--PSRRGPRR 99
A + +R R+ T+R P RP A RS + LPP+ P R PR+
Sbjct: 194 AAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRK 253
Query: 100 HLSGCSAPACRIPTGCRCPCGR 121
H PA R+ +GCR C R
Sbjct: 254 HPERTRRPAQRLESGCRGHCSR 275
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 38.1 bits (87), Expect = 0.002
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 53 ARRTMRPLPGRIEVRTKRGPQRPA-----------APERSPQPRLPPSRH--PSRRGPRR 99
A + +R R+ T+R P RP A RS + LPP+ P R PR+
Sbjct: 194 AAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRK 253
Query: 100 HLSGCSAPACRIPTGCRCPCGR 121
H PA R+ +GCR C R
Sbjct: 254 HPERTRRPAQRLESGCRGHCSR 275
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 38.1 bits (87), Expect = 0.002
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 53 ARRTMRPLPGRIEVRTKRGPQRPA-----------APERSPQPRLPPSRH--PSRRGPRR 99
A + +R R+ T+R P RP A RS + LPP+ P R PR+
Sbjct: 194 AAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRK 253
Query: 100 HLSGCSAPACRIPTGCRCPCGR 121
H PA R+ +GCR C R
Sbjct: 254 HPERTRRPAQRLESGCRGHCSR 275
>gi|40805108 putative small membrane protein NID67 [Homo sapiens]
Length = 135
Score = 38.1 bits (87), Expect = 0.002
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 12 GRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEVRTKRG 71
G + P + W LP++A + S P GTL + + R PG R+ G
Sbjct: 10 GNVEGEPETPWS---LPSLAGSFLPERS--PQGTLEEELSWSCRG----PGT--GRSGGG 58
Query: 72 PQRPAAPERSPQP----RLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPC 119
PQ+P PE + +P LPP RG + L P + + C+ PC
Sbjct: 59 PQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPC 110
Score = 26.6 bits (57), Expect = 5.1
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 78 PERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPCGRP 122
PERSPQ L S RGP SG RIP P RP
Sbjct: 31 PERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPE----PAARP 71
>gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo
sapiens]
Length = 496
Score = 36.2 bits (82), Expect = 0.006
Identities = 37/120 (30%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 3 PASGATASLGRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPG 62
P GA +LG +A+ LP A V R G R C+AR ++ LPG
Sbjct: 44 PVRGAERALGSAQAQRHP----PPLPTCALQRVDRLGVAGAGGRRCRACRARTSV--LPG 97
Query: 63 RIEVRTKRGPQRPAAPERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPCGRP 122
VR +G PRLP R + R S +AP+ P R P GRP
Sbjct: 98 LRAVRRGQGQAAGRVCVAPDSPRLPVPRGDLKGRGREIRSPAAAPSRSSPAQTR-PAGRP 156
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 35.8 bits (81), Expect = 0.008
Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 24/127 (18%)
Query: 2 TPASGATASLGRLRARPRSRWDAAYLPAVAAVCVARA------SHVPNGTLRFG--VCKA 53
+P G T++ G+ + RP R VAA A A S G+ V +A
Sbjct: 126 SPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTSSATRVPRA 185
Query: 54 RRTMRPLPGRIEVRTKRGPQRPAAPERS-------PQPRLPPSRHPS-----RRGPRRHL 101
RR+ R R P P AP RS P PR P SR P R +R L
Sbjct: 186 RRSSR----RALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRLLSRTRQREL 241
Query: 102 SGCSAPA 108
G +AP+
Sbjct: 242 GGSAAPS 248
Score = 29.6 bits (65), Expect = 0.60
Identities = 29/71 (40%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 36 ARASHVPNGTLRFGVCKARRTMRPLPGRIEVRTKRGPQRP----AAPERSPQPRLPPSRH 91
ARAS P G F + +R RP GR RT+R P AAP RSP P P S
Sbjct: 123 ARAS--PGGG--FTSAEGKRKTRPA-GRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTS 177
Query: 92 PSRRGPRRHLS 102
+ R PR S
Sbjct: 178 SATRVPRARRS 188
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 35.8 bits (81), Expect = 0.008
Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 24/127 (18%)
Query: 2 TPASGATASLGRLRARPRSRWDAAYLPAVAAVCVARA------SHVPNGTLRFG--VCKA 53
+P G T++ G+ + RP R VAA A A S G+ V +A
Sbjct: 126 SPGGGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTSSATRVPRA 185
Query: 54 RRTMRPLPGRIEVRTKRGPQRPAAPERS-------PQPRLPPSRHPS-----RRGPRRHL 101
RR+ R R P P AP RS P PR P SR P R +R L
Sbjct: 186 RRSSR----RALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRLLSRTRQREL 241
Query: 102 SGCSAPA 108
G +AP+
Sbjct: 242 GGSAAPS 248
Score = 29.6 bits (65), Expect = 0.60
Identities = 29/71 (40%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 36 ARASHVPNGTLRFGVCKARRTMRPLPGRIEVRTKRGPQRP----AAPERSPQPRLPPSRH 91
ARAS P G F + +R RP GR RT+R P AAP RSP P P S
Sbjct: 123 ARAS--PGGG--FTSAEGKRKTRPA-GRGGGRTRRVVAAPESAAAAPGRSPSPADPGSTS 177
Query: 92 PSRRGPRRHLS 102
+ R PR S
Sbjct: 178 SATRVPRARRS 188
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 34.7 bits (78), Expect = 0.019
Identities = 37/108 (34%), Positives = 43/108 (39%), Gaps = 16/108 (14%)
Query: 18 PRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEVRTKRGPQRPAA 77
PR R AA L A+AA R S P G + PLP ++ R P PAA
Sbjct: 60 PRERPAAARLSALAAAQPRRRSPGPQGGGGGDIAS------PLPPALQPRG--APAVPAA 111
Query: 78 PERSP---QPRLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPCGRP 122
P P +P PP R GP R + SA A P P RP
Sbjct: 112 PSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRP-----PLARP 154
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 34.7 bits (78), Expect = 0.019
Identities = 37/108 (34%), Positives = 43/108 (39%), Gaps = 16/108 (14%)
Query: 18 PRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEVRTKRGPQRPAA 77
PR R AA L A+AA R S P G + PLP ++ R P PAA
Sbjct: 60 PRERPAAARLSALAAAQPRRRSPGPQGGGGGDIAS------PLPPALQPRG--APAVPAA 111
Query: 78 PERSP---QPRLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPCGRP 122
P P +P PP R GP R + SA A P P RP
Sbjct: 112 PSPGPLPARPSSPPPRPSLPSGPHRPVLPPSALAAPRP-----PLARP 154
>gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens]
Length = 434
Score = 33.9 bits (76), Expect = 0.032
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 61 PGRIEVRTKRGPQRPAAPERSPQPRLPPSRHP-SRRGPRRHLS 102
PG V GP PAAP P PR P + P P+ HLS
Sbjct: 344 PGTRSVSASSGPCSPAAPHPPPPPRFQPHQGPWGAPSPQAHLS 386
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 33.5 bits (75), Expect = 0.042
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 72 PQRPAAPERSPQPRLPPSRHPSRRGPRRHLSGCSAPA 108
P +P P R P P LP +R PS P +G +APA
Sbjct: 754 PTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPA 790
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 33.5 bits (75), Expect = 0.042
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 72 PQRPAAPERSPQPRLPPSRHPSRRGPRRHLSGCSAPA 108
P +P P R P P LP +R PS P +G +APA
Sbjct: 749 PTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPA 785
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 33.5 bits (75), Expect = 0.042
Identities = 30/96 (31%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 3 PASGATASLGRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPG 62
P S A RLRA P + LP V A AR + LR A P
Sbjct: 59 PPSSRAAVHSRLRAAPAAA--PRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPT 116
Query: 63 RIEVRTKRGPQRPAAPERSPQPRLPPSRHPSRRGPR 98
R + GP P P SRHP R PR
Sbjct: 117 GRRWRRRPGPSPPLQPR---------SRHPHTRYPR 143
Score = 30.4 bits (67), Expect = 0.35
Identities = 28/93 (30%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 17 RPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEVRTKRGPQRPA 76
+PRSR P AV A P GT + P P R + GP
Sbjct: 131 QPRSRHPHTRYPR--AVPEATPLRPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGP---- 184
Query: 77 APERSPQPRLP-PSRHPSRRGPRRHLSGCSAPA 108
P P+PR P P HP R R S P+
Sbjct: 185 -PRGDPRPRAPRPGDHPRRSPALRETPSLSPPS 216
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.1 bits (74), Expect = 0.054
Identities = 28/94 (29%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 7 ATASLGRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEV 66
ATA+ R RW + A C R S P G + RP P
Sbjct: 73 ATAAAARASGHAHGRWPRS----AATACTLRLSPWPGGASCHHRPRYHLRRRPQPHGAAS 128
Query: 67 -----RTKRGPQRPAAPERSPQPRLPPSRHPSRR 95
R + P+R A P R P LP S H +RR
Sbjct: 129 SCSLPRCRLCPERSAPPRRRGPPPLPTSCHWARR 162
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.1 bits (74), Expect = 0.054
Identities = 28/94 (29%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 7 ATASLGRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEV 66
ATA+ R RW + A C R S P G + RP P
Sbjct: 73 ATAAAARASGHAHGRWPRS----AATACTLRLSPWPGGASCHHRPRYHLRRRPQPHGAAS 128
Query: 67 -----RTKRGPQRPAAPERSPQPRLPPSRHPSRR 95
R + P+R A P R P LP S H +RR
Sbjct: 129 SCSLPRCRLCPERSAPPRRRGPPPLPTSCHWARR 162
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.1 bits (74), Expect = 0.054
Identities = 28/94 (29%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 7 ATASLGRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEV 66
ATA+ R RW + A C R S P G + RP P
Sbjct: 73 ATAAAARASGHAHGRWPRS----AATACTLRLSPWPGGASCHHRPRYHLRRRPQPHGAAS 128
Query: 67 -----RTKRGPQRPAAPERSPQPRLPPSRHPSRR 95
R + P+R A P R P LP S H +RR
Sbjct: 129 SCSLPRCRLCPERSAPPRRRGPPPLPTSCHWARR 162
>gi|40254851 protein kinase PKNbeta [Homo sapiens]
Length = 889
Score = 33.1 bits (74), Expect = 0.054
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 55 RTMRPLPGRIEVRTKRGPQRPAAPERSPQPRLPPSR 90
RT RP +E RT+RGP PA+P R P PRL R
Sbjct: 529 RTKRP---HMEPRTRRGPSPPASPTRKP-PRLQDFR 560
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.7 bits (73), Expect = 0.071
Identities = 20/63 (31%), Positives = 25/63 (39%)
Query: 54 RRTMRPLPGRIEVRTKRGPQRPAAPERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRIPT 113
R RP PG GP PA+P +P P P P L+G + PA R+
Sbjct: 756 RLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSR 815
Query: 114 GCR 116
R
Sbjct: 816 ASR 818
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 32.7 bits (73), Expect = 0.071
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 52 KARRTMRPLPGR-IEVRTKRGPQRPAAPERSPQPR-------LPPSRHPSR--------R 95
++R + L GR RT+RGP R PE P LP +R +R R
Sbjct: 170 ESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAAR 229
Query: 96 GPRRHLSGCSAPA 108
GP RHL G S A
Sbjct: 230 GPARHLRGGSVAA 242
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 32.7 bits (73), Expect = 0.071
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 72 PQRPAAPERSPQPRLPPSRHP---SRRGPR-RHLSGCSAPA 108
PQ AAP P P PP+R P SR GPR R S S PA
Sbjct: 201 PQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPA 241
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 32.7 bits (73), Expect = 0.071
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 52 KARRTMRPLPGR-IEVRTKRGPQRPAAPERSPQPR-------LPPSRHPSR--------R 95
++R + L GR RT+RGP R PE P LP +R +R R
Sbjct: 170 ESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAAR 229
Query: 96 GPRRHLSGCSAPA 108
GP RHL G S A
Sbjct: 230 GPARHLRGGSVAA 242
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 32.7 bits (73), Expect = 0.071
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 72 PQRPAAPERSPQPRLPPSRHP---SRRGPR-RHLSGCSAPA 108
PQ AAP P P PP+R P SR GPR R S S PA
Sbjct: 201 PQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPA 241
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 32.7 bits (73), Expect = 0.071
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 52 KARRTMRPLPGR-IEVRTKRGPQRPAAPERSPQPR-------LPPSRHPSR--------R 95
++R + L GR RT+RGP R PE P LP +R +R R
Sbjct: 170 ESRAARQGLGGRSARARTRRGPHRTRRPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAAR 229
Query: 96 GPRRHLSGCSAPA 108
GP RHL G S A
Sbjct: 230 GPARHLRGGSVAA 242
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 32.7 bits (73), Expect = 0.071
Identities = 21/41 (51%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 72 PQRPAAPERSPQPRLPPSRHP---SRRGPR-RHLSGCSAPA 108
PQ AAP P P PP+R P SR GPR R S S PA
Sbjct: 201 PQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPA 241
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 32.7 bits (73), Expect = 0.071
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 58 RPLPGRIEVRTKRGPQRPAAPERSPQPRLPPSRHPSR---RGPR 98
+P G+++ T P +P+ P RSP P P+R ++ +GPR
Sbjct: 3723 QPASGQLQSETATTPAKPSFPSRSPAPERLPARAQAKSCTKGPR 3766
Score = 27.3 bits (59), Expect = 3.0
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 71 GPQRPAAPERSPQPRLPPSRHPSRRGPRRHL 101
G PA PE R P R P RGP R L
Sbjct: 1120 GDGAPANPEEPGGSRPGPGRSPQARGPSRSL 1150
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 32.7 bits (73), Expect = 0.071
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 67 RTKRGPQRPAAPERSPQPRLPPSRHPSRRGPRRH 100
R++ +RP +P RSP P+ P SR G RH
Sbjct: 509 RSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARH 542
Score = 25.8 bits (55), Expect = 8.7
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 14/66 (21%)
Query: 59 PLPGRIEVRTKRGPQRPAAPERSPQPRLPPS--------------RHPSRRGPRRHLSGC 104
P P + P PA + SP PR PS R RR RR S
Sbjct: 341 PSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSA 400
Query: 105 SAPACR 110
SAP R
Sbjct: 401 SAPRRR 406
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 32.3 bits (72), Expect = 0.093
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 76 AAPERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRIPTG-CRCPCGRP 122
AAPE S +PR P + ++RG +R C++P C G C G P
Sbjct: 1377 AAPEVSEEPRCPRAACQAKRGDQRCDRECNSPGCGWDGGDCSLSVGDP 1424
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,490,238
Number of Sequences: 37866
Number of extensions: 383863
Number of successful extensions: 3753
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 267
Number of HSP's that attempted gapping in prelim test: 3089
Number of HSP's gapped (non-prelim): 883
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.