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Search of human proteins with 60498987
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|60498987 forkhead box P1 isoform 2 [Homo sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|60498987 forkhead box P1 isoform 2 [Homo sapiens] 240 2e-64
gi|18644886 forkhead box P1 isoform 1 [Homo sapiens] 123 3e-29
gi|17017963 forkhead box P2 isoform I [Homo sapiens] 50 5e-07
gi|149999352 forkhead box P2 isoform II [Homo sapiens] 50 5e-07
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 29 0.70
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 29 0.70
gi|57864582 hornerin [Homo sapiens] 29 0.92
gi|169209574 PREDICTED: hypothetical protein LOC400558 [Homo sap... 28 2.0
gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo sap... 28 2.0
gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo sap... 28 2.0
gi|60498992 forkhead box P4 isoform 3 [Homo sapiens] 28 2.0
gi|29789367 forkhead box P4 isoform 2 [Homo sapiens] 28 2.0
gi|60498989 forkhead box P4 isoform 1 [Homo sapiens] 28 2.0
gi|51479148 Rho GTPase activating protein 20 [Homo sapiens] 28 2.0
gi|27734829 hypothetical protein LOC256329 [Homo sapiens] 27 2.7
gi|98991767 mitogen-activated protein kinase kinase kinase 7 int... 27 2.7
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 27 3.5
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 27 3.5
gi|178057337 mohawk homeobox [Homo sapiens] 27 3.5
gi|189181750 human immunodeficiency virus type I enhancer bindin... 27 3.5
gi|116089331 human immunodeficiency virus type I enhancer bindin... 27 3.5
gi|149944516 tet oncogene family member 3 [Homo sapiens] 27 4.6
gi|31543980 zinc finger protein 263 [Homo sapiens] 27 4.6
gi|50233787 nuclear protein in testis [Homo sapiens] 27 4.6
gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo ... 26 5.9
gi|28373122 contactin 4 isoform a precursor [Homo sapiens] 26 5.9
gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens] 26 7.8
gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens] 26 7.8
gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens] 26 7.8
>gi|60498987 forkhead box P1 isoform 2 [Homo sapiens]
Length = 114
Score = 240 bits (612), Expect = 2e-64
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQ 60
MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQ
Sbjct: 1 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQ 60
Query: 61 WHLINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVAETKMSGPVCQPNPSPF 114
WHLINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVAETKMSGPVCQPNPSPF
Sbjct: 61 WHLINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVAETKMSGPVCQPNPSPF 114
>gi|18644886 forkhead box P1 isoform 1 [Homo sapiens]
Length = 677
Score = 123 bits (309), Expect = 3e-29
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQ 60
MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQ
Sbjct: 1 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQ 60
>gi|17017963 forkhead box P2 isoform I [Homo sapiens]
Length = 715
Score = 49.7 bits (117), Expect = 5e-07
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 1 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQ 58
MMQES TET SN S QNG + L+ G R+GRS+G+T + ++ +L H QQQQ
Sbjct: 1 MMQESATETISNSSMNQNGMSTLSSQLDAGS-RDGRSSGDTSS-EVSTVELLHLQQQQ 56
>gi|149999352 forkhead box P2 isoform II [Homo sapiens]
Length = 740
Score = 49.7 bits (117), Expect = 5e-07
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 1 MMQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQ 58
MMQES TET SN S QNG + L+ G R+GRS+G+T + ++ +L H QQQQ
Sbjct: 1 MMQESATETISNSSMNQNGMSTLSSQLDAGS-RDGRSSGDTSS-EVSTVELLHLQQQQ 56
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 2 MQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGET----PAVDIGA-ADLAHAQQ 56
M+ G + S S + S S E GG + G S T P G+ AD+ +
Sbjct: 77 MEVDGNKVMS--SFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLK 134
Query: 57 QQQQWHLINHQPSRSPSSWLKRLISSPWELEVL 89
Q++ LI ++P +PS +++L+S W+ ++L
Sbjct: 135 QRKMEELIKNEPEETPS--IEKLLSKDWKDKLL 165
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 2 MQESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGET----PAVDIGA-ADLAHAQQ 56
M+ G + S S + S S E GG + G S T P G+ AD+ +
Sbjct: 90 MEVDGNKVMS--SFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLK 147
Query: 57 QQQQWHLINHQPSRSPSSWLKRLISSPWELEVL 89
Q++ LI ++P +PS +++L+S W+ ++L
Sbjct: 148 QRKMEELIKNEPEETPS--IEKLLSKDWKDKLL 178
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 11 SNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQWHLINHQPSR 70
S+GS+ G GS G R+G +G++P+ + L H+ Q SR
Sbjct: 2622 SSGSSSHYGQHGSGSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSR 2681
Query: 71 SP 72
P
Sbjct: 2682 GP 2683
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 11 SNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQWHLINHQPSR 70
S+GS+ G GS G R+G +G +P+ + L H+ Q SR
Sbjct: 1212 SSGSSSHYGQHGSGSRQSSGHGRQGSGSGHSPSRGRHGSGLGHSSSHGQHGSGSGRSSSR 1271
Query: 71 SP 72
P
Sbjct: 1272 GP 1273
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 3 QESGTETKSNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQWH 62
+ G+ ++S+ Q+GSG G R+G +G++P+ + L H+ Q
Sbjct: 1677 ERHGSSSRSSSRYGQHGSGSRQ---SSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGS 1733
Query: 63 LINHQPSRSP 72
SR P
Sbjct: 1734 GSGRSSSRGP 1743
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 11 SNGSAIQNGSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHAQQQQQQWHLINHQPSR 70
S+GS+ + G GS G R+G +G +P+ + H+ Q SR
Sbjct: 2152 SSGSSSRYGQHGSGSRQSSGHGRQGSGSGHSPSRGRHGSGSGHSSSHGQHGSGSGRSSSR 2211
Query: 71 SP 72
P
Sbjct: 2212 GP 2213
>gi|169209574 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 39 GETPAVDIGAADLAHAQQQQQQWHLINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVA 98
G P GA A Q H RS W + L PL V
Sbjct: 146 GTCPGAPQGAVGTCRASPQSP---CHRHPSLRSGLEWTQPPDQDQGLLTPGSPPLVSGVT 202
Query: 99 ETKMSGPVCQPNPSPF 114
+T + P C P P+P+
Sbjct: 203 QTPWTSPFCPPRPTPW 218
>gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 39 GETPAVDIGAADLAHAQQQQQQWHLINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVA 98
G P GA A Q H RS W + L PL V
Sbjct: 146 GTCPGAPQGAVGTCRASPQSP---CHRHPSLRSGLEWTQPPDQDQGLLTPGSPPLVSGVT 202
Query: 99 ETKMSGPVCQPNPSPF 114
+T + P C P P+P+
Sbjct: 203 QTPWTSPFCPPRPTPW 218
>gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Query: 39 GETPAVDIGAADLAHAQQQQQQWHLINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVA 98
G P GA A Q H RS W + L PL V
Sbjct: 146 GTCPGAPQGAVGTCRASPQSP---CHRHPSLRSGLEWTQPPDQDQGLLTPGSPPLVSGVT 202
Query: 99 ETKMSGPVCQPNPSPF 114
+T + P C P P+P+
Sbjct: 203 QTPWTSPFCPPRPTPW 218
>gi|60498992 forkhead box P4 isoform 3 [Homo sapiens]
Length = 678
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 1 MMQESGTETKSNGSAIQNG-----------SGGSNHLLECGGLREGRSNGETPAVDIGAA 49
MM ES +ET + + QNG SGG+ G RE + ++ ++ A
Sbjct: 1 MMVESASETIRSAPSGQNGVGSLSGQADGSSGGATGTTASGTGREVTTGADSNG-EMSPA 59
Query: 50 DLAHAQQQQ 58
+L H QQQQ
Sbjct: 60 ELLHFQQQQ 68
>gi|29789367 forkhead box P4 isoform 2 [Homo sapiens]
Length = 667
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 1 MMQESGTETKSNGSAIQNG-----------SGGSNHLLECGGLREGRSNGETPAVDIGAA 49
MM ES +ET + + QNG SGG+ G RE + ++ ++ A
Sbjct: 1 MMVESASETIRSAPSGQNGVGSLSGQADGSSGGATGTTASGTGREVTTGADSNG-EMSPA 59
Query: 50 DLAHAQQQQ 58
+L H QQQQ
Sbjct: 60 ELLHFQQQQ 68
>gi|60498989 forkhead box P4 isoform 1 [Homo sapiens]
Length = 680
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 1 MMQESGTETKSNGSAIQNG-----------SGGSNHLLECGGLREGRSNGETPAVDIGAA 49
MM ES +ET + + QNG SGG+ G RE + ++ ++ A
Sbjct: 1 MMVESASETIRSAPSGQNGVGSLSGQADGSSGGATGTTASGTGREVTTGADSNG-EMSPA 59
Query: 50 DLAHAQQQQ 58
+L H QQQQ
Sbjct: 60 ELLHFQQQQ 68
>gi|51479148 Rho GTPase activating protein 20 [Homo sapiens]
Length = 1191
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 52 AHAQQQQQQWHLINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVAETKMSGPVCQPNP 111
A+ ++ +WH H + PS+WL+ ++S + + E K++ P P
Sbjct: 1014 AYTKKDTMEWHSQMHSVTLHPSTWLRNGVASLKNWSLKKKAKAARPEEEKIASPKGPLEP 1073
Query: 112 SP 113
P
Sbjct: 1074 PP 1075
>gi|27734829 hypothetical protein LOC256329 [Homo sapiens]
Length = 634
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 33 REGRSNGETPAVDIGA-----ADLAHAQQQQQQWHLINHQPSRSPSSWLKRLISSPWELE 87
R+ R++ E V G+ DL + +++ QP P W L+ SP L+
Sbjct: 304 RDHRASSEQALVQAGSYSRDSEDLQKTHSPRHGEPVLSPQPCTDPDHWSPELLQSPTGLK 363
Query: 88 VLQV 91
++ V
Sbjct: 364 IVAV 367
>gi|98991767 mitogen-activated protein kinase kinase kinase 7
interacting protein 3 [Homo sapiens]
Length = 712
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 68 PSRSPSSWLKRLISSPWELEVLQVPLWGAVAETKMSGPVCQPNPSP 113
PS SPS + P+ + P++ + T+ +GP C P+PSP
Sbjct: 406 PSSSPSRGISSQPKPPFSVN----PVY--ITYTQPTGPSCTPSPSP 445
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 35 GRSNGETPAVDIGAADLAHAQQQQQQWHLINHQP---SRSPSSWLKRLISSPWELEVLQV 91
GR GET + AA L QQ+ +P SR P + L+ PW L
Sbjct: 24 GRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGA 83
Query: 92 PLWGAVAETKMSGPVCQPNPSP 113
PL + G +P +P
Sbjct: 84 PLQDRAPSAHVPGSASRPTATP 105
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 35 GRSNGETPAVDIGAADLAHAQQQQQQWHLINHQP---SRSPSSWLKRLISSPWELEVLQV 91
GR GET + AA L QQ+ +P SR P + L+ PW L
Sbjct: 24 GRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGA 83
Query: 92 PLWGAVAETKMSGPVCQPNPSP 113
PL + G +P +P
Sbjct: 84 PLQDRAPSAHVPGSASRPTATP 105
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 35 GRSNGETPAVDIGAADLAHAQQQQQQWHLINHQP---SRSPSSWLKRLISSPWELEVLQV 91
GR GET + AA L QQ+ +P SR P + L+ PW L
Sbjct: 24 GRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPLGA 83
Query: 92 PLWGAVAETKMSGPVCQPNPSP 113
PL + G +P +P
Sbjct: 84 PLQDRAPSAHVPGSASRPTATP 105
>gi|178057337 mohawk homeobox [Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 59 QQWHLINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVAETKMSGPVCQPNPS 112
+QW L H+ + P+ K L++ ++ ++QV W A A ++ V QP+ S
Sbjct: 86 KQW-LYKHRDNPYPTKTEKILLALGSQMTLVQVSNWFANARRRLKNTVRQPDLS 138
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 62 HLINHQPSRSPSSW----LKRLISSPWELEVLQVPLWGA 96
HL+ H+P +SP + + L+SSP+ + L L+ A
Sbjct: 1150 HLVQHEPGQSPEFFSTQAMSSLLSSPYSMPPLPPSLFQA 1188
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 62 HLINHQPSRSPSSW----LKRLISSPWELEVLQVPLWGA 96
HL+ H+P +SP + + L+SSP+ + L L+ A
Sbjct: 1150 HLVQHEPGQSPEFFSTQAMSSLLSSPYSMPPLPPSLFQA 1188
>gi|149944516 tet oncogene family member 3 [Homo sapiens]
Length = 1660
Score = 26.6 bits (57), Expect = 4.6
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 15/73 (20%)
Query: 18 NGSGGSNHLLECGGLREGRSNGETPAV------DIGAADLAHAQQQQQQWHLINHQPSRS 71
NG GGS + S+GE+PA+ GA+ LA + QW L + ++
Sbjct: 1315 NGVGGSWGVF---------SSGESPAIVPDKLSSFGASCLAPSHFTDGQWGLFPGEGQQA 1365
Query: 72 PSSWLKRLISSPW 84
S RL PW
Sbjct: 1366 ASHSGGRLRGKPW 1378
>gi|31543980 zinc finger protein 263 [Homo sapiens]
Length = 683
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 63 LINHQPSRSPSSWLKRLISSPWELEVLQVPLWGAVAETKMSGP 105
L+ P R P + +R +S+PW + P G + + +M+GP
Sbjct: 174 LLGPSPQRDPQAVKERALSAPW---LSLFPPEGNMEDKEMTGP 213
>gi|50233787 nuclear protein in testis [Homo sapiens]
Length = 1132
Score = 26.6 bits (57), Expect = 4.6
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 26/131 (19%)
Query: 6 GTETKSNGSAIQN----------GSGGSNHLLECGGLRE--------GRSNGETPAVDIG 47
G E + +G I G+G H L E G TP++D G
Sbjct: 580 GVERRGSGKVINQVSLHQDGHLGGAGPPGHCLVADRTSEALPLCWQGGFQPESTPSLDAG 639
Query: 48 AADLAHAQQQQQQWHLINHQP-----SRSPSSWLKRLISSPWELEVLQVPLWGAVAETKM 102
A+LA Q Q + ++ Q R K ++ PWE +WG T M
Sbjct: 640 LAELAPLQGQGLEKQVLGLQKGQQTGGRGVLPQGKEPLAVPWEGS--SGAMWGDDRGTPM 697
Query: 103 SGPVCQPNPSP 113
+ Q NPSP
Sbjct: 698 AQSYDQ-NPSP 707
>gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 27 LECGGLREGRSNGETPAVDIGAADLA 52
LE +EG+SNG+T A++ AA A
Sbjct: 109 LEASSTQEGKSNGKTKALNSNAASNA 134
>gi|28373122 contactin 4 isoform a precursor [Homo sapiens]
Length = 1026
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 83 PWELEVLQVPLWGAVAETKMSGPVCQPNPSP 113
PWEL VLQ + ++ + GP+ PSP
Sbjct: 4 PWELLVLQSFILCLADDSTLHGPIFIQEPSP 34
>gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 25.8 bits (55), Expect = 7.8
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 21 GGSNHLLECGGLREGRSNGETPAVDIGAAD-----LAHAQQQQQQWH----LINHQPSRS 71
G S CGG +GR GE+P D G A L+ A Q + I+ P R
Sbjct: 61 GASPRWQLCGG--DGRGLGESP--DPGGATAWEELLSQATPQVPESRPTGIQISMSPRRW 116
Query: 72 PSSWLKRLISSP 83
P +WL ++I P
Sbjct: 117 PLTWLWKVIEGP 128
>gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 25.8 bits (55), Expect = 7.8
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 21 GGSNHLLECGGLREGRSNGETPAVDIGAAD-----LAHAQQQQQQWH----LINHQPSRS 71
G S CGG +GR GE+P D G A L+ A Q + I+ P R
Sbjct: 61 GASPRWQLCGG--DGRGLGESP--DPGGATAWEELLSQATPQVPESRPTGIQISMSPRRW 116
Query: 72 PSSWLKRLISSP 83
P +WL ++I P
Sbjct: 117 PLTWLWKVIEGP 128
>gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 25.8 bits (55), Expect = 7.8
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 21 GGSNHLLECGGLREGRSNGETPAVDIGAAD-----LAHAQQQQQQWH----LINHQPSRS 71
G S CGG +GR GE+P D G A L+ A Q + I+ P R
Sbjct: 61 GASPRWQLCGG--DGRGLGESP--DPGGATAWEELLSQATPQVPESRPTGIQISMSPRRW 116
Query: 72 PSSWLKRLISSP 83
P +WL ++I P
Sbjct: 117 PLTWLWKVIEGP 128
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,412,547
Number of Sequences: 37866
Number of extensions: 248450
Number of successful extensions: 645
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 43
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.