Guide to the Human Genome
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Name: ARHGAP20 Sequence: fasta or formatted (1191aa) NCBI GI: 51479148
Description:

Rho GTPase activating protein 20

Referenced in:

Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         64           3
 C cysteine            2.3         27           1
 D aspartate           5.4         64           1
 E glutamate           6.3         75           3
 F phenylalanine       3.3         39           2
 G glycine             4.7         56           2
 H histidine           2.3         27           1
 I isoleucine          3.9         47           2
 K lysine              7.2         86           3
 L leucine            10.2        122           2
 M methionine          2.1         25           1
 N asparagine          4.6         55           3
 P proline             6.4         76           3
 Q glutamine           4.6         55           2
 R arginine            5.0         60           3
 S serine             13.1        156           3
 T threonine           5.2         62           2
 V valine              4.7         56           2
 W tryptophan          1.1         13           1
 Y tyrosine            2.2         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rho GTPase activating protein 20 
TAGAP                 0.068   T-cell activation Rho GTPase-activating protein isof...
LOC100291736          0.058   PREDICTED: similar to hCG2040562 
LOC100290273          0.058   PREDICTED: hypothetical protein XP_002346902 
LOC100287613          0.058   PREDICTED: hypothetical protein XP_002342736 
LOC100287613          0.058   PREDICTED: similar to hCG2040562 
TAGAP                 0.054   T-cell activation Rho GTPase-activating protein isof...
ARHGAP1               0.034   Rho GTPase activating protein 1 
ARHGAP4               0.032   Rho GTPase activating protein 4 
LOC553158             0.030   PRR5-ARHGAP8 fusion protein 
ARHGAP8               0.030   Rho GTPase activating protein 8 isoform 2 
ARHGAP8               0.030   Rho GTPase activating protein 8 isoform 1 
TAGAP                 0.028   T-cell activation Rho GTPase-activating protein isof...
ARHGAP17              0.028   nadrin isoform 1 
FAM13A                0.028   family with sequence similarity 13, member A1 isofor...
MYO9A                 0.027   myosin IXA 
ARHGAP17              0.026   nadrin isoform 2 
SH3BP1                0.026   SH3-domain binding protein 1 
SRGAP3                0.025   SLIT-ROBO Rho GTPase activating protein 3 isoform a ...
SRGAP3                0.025   SLIT-ROBO Rho GTPase activating protein 3 isoform b ...
RICH2                 0.024   Rho GTPase-activating protein RICH2 
SRGAP1                0.022   SLIT-ROBO Rho GTPase activating protein 1 
ARHGAP6               0.022   Rho GTPase activating protein 6 isoform 4 
ARHGAP6               0.022   Rho GTPase activating protein 6 isoform 3 
ARHGAP6               0.022   Rho GTPase activating protein 6 isoform 1 
ARHGAP15              0.022   ARHGAP15 
ARHGAP12              0.021   Rho GTPase activating protein 12 
SRGAP2                0.021   SLIT-ROBO Rho GTPase activating protein 2 isoform a...
SRGAP2                0.021   SLIT-ROBO Rho GTPase activating protein 2 isoform b...
ARHGAP23              0.020   Rho GTPase activating protein 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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