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Search of human proteins with 60498980
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|60498980 breast carcinoma amplified sequence 4 isoform b
[Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|60498980 breast carcinoma amplified sequence 4 isoform b [Hom... 412 e-115
gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom... 325 2e-89
gi|58294158 breast carcinoma amplified sequence 4 isoform c [Hom... 299 1e-81
gi|8922952 cappuccino [Homo sapiens] 120 8e-28
gi|32967514 neurofibromin 2 isoform 7 [Homo sapiens] 32 0.28
gi|32967254 neurofibromin 2 isoform 2 [Homo sapiens] 32 0.28
gi|32967266 neurofibromin 2 isoform 2 [Homo sapiens] 32 0.28
gi|32967264 neurofibromin 2 isoform 7 [Homo sapiens] 32 0.28
gi|32967262 neurofibromin 2 isoform 6 [Homo sapiens] 32 0.28
gi|32967260 neurofibromin 2 isoform 5 [Homo sapiens] 32 0.28
gi|32451486 neurofibromin 2 isoform 2 [Homo sapiens] 32 0.28
gi|4557795 neurofibromin 2 isoform 1 [Homo sapiens] 32 0.28
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 32 0.48
gi|149408146 TOX high mobility group box family member 2 isoform... 30 1.1
gi|149408144 TOX high mobility group box family member 2 isoform... 30 1.1
gi|149408141 TOX high mobility group box family member 2 isoform... 30 1.1
gi|14249636 TOX high mobility group box family member 2 isoform ... 30 1.1
gi|157743282 synaptonemal complex central element protein 2 [Hom... 30 1.1
gi|153945846 inositol 1,4,5-triphosphate receptor, type 3 [Homo ... 30 1.4
gi|4557719 DNA ligase I [Homo sapiens] 29 2.4
gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens] 29 2.4
gi|14861860 testicular acid phosphatase precursor [Homo sapiens] 29 2.4
gi|148612801 KIAA1009 protein [Homo sapiens] 29 2.4
gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens] 29 3.1
gi|169218268 PREDICTED: similar to Serine-protein kinase ATM, pa... 29 3.1
gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens] 29 3.1
gi|239755298 PREDICTED: hypothetical protein [Homo sapiens] 28 5.3
gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo ... 28 5.3
gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo ... 28 5.3
gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo ... 28 5.3
>gi|60498980 breast carcinoma amplified sequence 4 isoform b [Homo
sapiens]
Length = 203
Score = 412 bits (1059), Expect = e-115
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60
MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE
Sbjct: 1 MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60
Query: 61 AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF 120
AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF
Sbjct: 61 AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF 120
Query: 121 VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKSPAPVPVTYELPTLYR 180
VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKSPAPVPVTYELPTLYR
Sbjct: 121 VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKSPAPVPVTYELPTLYR 180
Query: 181 TEDYFPVDAGEAQHHPRTCPRPL 203
TEDYFPVDAGEAQHHPRTCPRPL
Sbjct: 181 TEDYFPVDAGEAQHHPRTCPRPL 203
>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
sapiens]
Length = 211
Score = 325 bits (833), Expect = 2e-89
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60
MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE
Sbjct: 1 MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60
Query: 61 AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF 120
AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF
Sbjct: 61 AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF 120
Query: 121 VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRN 163
VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRN
Sbjct: 121 VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRN 163
>gi|58294158 breast carcinoma amplified sequence 4 isoform c [Homo
sapiens]
Length = 158
Score = 299 bits (766), Expect = 1e-81
Identities = 158/203 (77%), Positives = 158/203 (77%), Gaps = 45/203 (22%)
Query: 1 MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60
MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE
Sbjct: 1 MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE 60
Query: 61 AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAF 120
AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLE
Sbjct: 61 AKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLE-- 118
Query: 121 VKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKSPAPVPVTYELPTLYR 180
KSPAPVPVTYELPTLYR
Sbjct: 119 -------------------------------------------KSPAPVPVTYELPTLYR 135
Query: 181 TEDYFPVDAGEAQHHPRTCPRPL 203
TEDYFPVDAGEAQHHPRTCPRPL
Sbjct: 136 TEDYFPVDAGEAQHHPRTCPRPL 158
>gi|8922952 cappuccino [Homo sapiens]
Length = 217
Score = 120 bits (301), Expect = 8e-28
Identities = 63/149 (42%), Positives = 94/149 (63%), Gaps = 4/149 (2%)
Query: 42 MRSGARELALFLTPEPGA--EAKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPV 99
+R A A L P GA E + ++ ++E +L R++EF + D++R D+S ++ E +P
Sbjct: 61 LRRAAAGYAACLLPGAGARPEVEALDASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPR 120
Query: 100 LKAKLTEMRGIYAKVDRLEAFVKMVGHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLP 159
+ AK EMR IY+++DRLEAFV+MVG VA +E V +AE + G FP+A ++ L + +P
Sbjct: 121 IHAKAAEMRRIYSRIDRLEAFVRMVGGRVARMEEQVTKAEAELGTFPRAFKKLLHTMNVP 180
Query: 160 SFRNKS--PAPVPVTYELPTLYRTEDYFP 186
S +KS P YE P L+RTEDYFP
Sbjct: 181 SLFSKSAPSRPQQAGYEAPVLFRTEDYFP 209
>gi|32967514 neurofibromin 2 isoform 7 [Homo sapiens]
Length = 507
Score = 32.3 bits (72), Expect = 0.28
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 14 NHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLL 73
NH L R+ D + + + A + + + R+ L + EA+ + +E LL
Sbjct: 220 NHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQ-RLAREKQMREEAERTRDELERRLL 278
Query: 74 RLEEFCSLAD--LIRSDTS--------QILEENIPVLKAKLTE----MRGIYAKVDRLEA 119
+++E ++A+ L+RS+ + QI EE +L K E M+ I A R E
Sbjct: 279 QMKEEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEE 338
Query: 120 FVKMVGHHVAFLEADVL----------------QAERDHGAFPQALRR----WLGSAGLP 159
+++ V LEA+VL Q ++D +A RR L A P
Sbjct: 339 EKRLMEQKV--LEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKP 396
Query: 160 SFRNKSPAPVPVTYELPTLYRTEDYFPVD 188
++ +P P P+ ++P+ D D
Sbjct: 397 TYPPMNPIPAPLPPDIPSFNLIGDSLSFD 425
>gi|32967254 neurofibromin 2 isoform 2 [Homo sapiens]
Length = 590
Score = 32.3 bits (72), Expect = 0.28
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 14 NHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLL 73
NH L R+ D + + + A + + + R+ L + EA+ + +E LL
Sbjct: 303 NHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQ-RLAREKQMREEAERTRDELERRLL 361
Query: 74 RLEEFCSLAD--LIRSDTS--------QILEENIPVLKAKLTE----MRGIYAKVDRLEA 119
+++E ++A+ L+RS+ + QI EE +L K E M+ I A R E
Sbjct: 362 QMKEEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEE 421
Query: 120 FVKMVGHHVAFLEADVL----------------QAERDHGAFPQALRR----WLGSAGLP 159
+++ V LEA+VL Q ++D +A RR L A P
Sbjct: 422 EKRLMEQKV--LEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKP 479
Query: 160 SFRNKSPAPVPVTYELPTLYRTEDYFPVD 188
++ +P P P+ ++P+ D D
Sbjct: 480 TYPPMNPIPAPLPPDIPSFNLIGDSLSFD 508
>gi|32967266 neurofibromin 2 isoform 2 [Homo sapiens]
Length = 590
Score = 32.3 bits (72), Expect = 0.28
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 14 NHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLL 73
NH L R+ D + + + A + + + R+ L + EA+ + +E LL
Sbjct: 303 NHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQ-RLAREKQMREEAERTRDELERRLL 361
Query: 74 RLEEFCSLAD--LIRSDTS--------QILEENIPVLKAKLTE----MRGIYAKVDRLEA 119
+++E ++A+ L+RS+ + QI EE +L K E M+ I A R E
Sbjct: 362 QMKEEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEE 421
Query: 120 FVKMVGHHVAFLEADVL----------------QAERDHGAFPQALRR----WLGSAGLP 159
+++ V LEA+VL Q ++D +A RR L A P
Sbjct: 422 EKRLMEQKV--LEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKP 479
Query: 160 SFRNKSPAPVPVTYELPTLYRTEDYFPVD 188
++ +P P P+ ++P+ D D
Sbjct: 480 TYPPMNPIPAPLPPDIPSFNLIGDSLSFD 508
>gi|32967264 neurofibromin 2 isoform 7 [Homo sapiens]
Length = 507
Score = 32.3 bits (72), Expect = 0.28
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 14 NHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLL 73
NH L R+ D + + + A + + + R+ L + EA+ + +E LL
Sbjct: 220 NHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQ-RLAREKQMREEAERTRDELERRLL 278
Query: 74 RLEEFCSLAD--LIRSDTS--------QILEENIPVLKAKLTE----MRGIYAKVDRLEA 119
+++E ++A+ L+RS+ + QI EE +L K E M+ I A R E
Sbjct: 279 QMKEEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEE 338
Query: 120 FVKMVGHHVAFLEADVL----------------QAERDHGAFPQALRR----WLGSAGLP 159
+++ V LEA+VL Q ++D +A RR L A P
Sbjct: 339 EKRLMEQKV--LEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKP 396
Query: 160 SFRNKSPAPVPVTYELPTLYRTEDYFPVD 188
++ +P P P+ ++P+ D D
Sbjct: 397 TYPPMNPIPAPLPPDIPSFNLIGDSLSFD 425
>gi|32967262 neurofibromin 2 isoform 6 [Homo sapiens]
Length = 549
Score = 32.3 bits (72), Expect = 0.28
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 14 NHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLL 73
NH L R+ D + + + A + + + R+ L + EA+ + +E LL
Sbjct: 262 NHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQ-RLAREKQMREEAERTRDELERRLL 320
Query: 74 RLEEFCSLAD--LIRSDTS--------QILEENIPVLKAKLTE----MRGIYAKVDRLEA 119
+++E ++A+ L+RS+ + QI EE +L K E M+ I A R E
Sbjct: 321 QMKEEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEE 380
Query: 120 FVKMVGHHVAFLEADVL----------------QAERDHGAFPQALRR----WLGSAGLP 159
+++ V LEA+VL Q ++D +A RR L A P
Sbjct: 381 EKRLMEQKV--LEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKP 438
Query: 160 SFRNKSPAPVPVTYELPTLYRTEDYFPVD 188
++ +P P P+ ++P+ D D
Sbjct: 439 TYPPMNPIPAPLPPDIPSFNLIGDSLSFD 467
>gi|32967260 neurofibromin 2 isoform 5 [Homo sapiens]
Length = 548
Score = 32.3 bits (72), Expect = 0.28
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 14 NHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLL 73
NH L R+ D + + + A + + + R+ L + EA+ + +E LL
Sbjct: 261 NHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQ-RLAREKQMREEAERTRDELERRLL 319
Query: 74 RLEEFCSLAD--LIRSDTS--------QILEENIPVLKAKLTE----MRGIYAKVDRLEA 119
+++E ++A+ L+RS+ + QI EE +L K E M+ I A R E
Sbjct: 320 QMKEEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEE 379
Query: 120 FVKMVGHHVAFLEADVL----------------QAERDHGAFPQALRR----WLGSAGLP 159
+++ V LEA+VL Q ++D +A RR L A P
Sbjct: 380 EKRLMEQKV--LEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKP 437
Query: 160 SFRNKSPAPVPVTYELPTLYRTEDYFPVD 188
++ +P P P+ ++P+ D D
Sbjct: 438 TYPPMNPIPAPLPPDIPSFNLIGDSLSFD 466
>gi|32451486 neurofibromin 2 isoform 2 [Homo sapiens]
Length = 590
Score = 32.3 bits (72), Expect = 0.28
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 14 NHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLL 73
NH L R+ D + + + A + + + R+ L + EA+ + +E LL
Sbjct: 303 NHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQ-RLAREKQMREEAERTRDELERRLL 361
Query: 74 RLEEFCSLAD--LIRSDTS--------QILEENIPVLKAKLTE----MRGIYAKVDRLEA 119
+++E ++A+ L+RS+ + QI EE +L K E M+ I A R E
Sbjct: 362 QMKEEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEE 421
Query: 120 FVKMVGHHVAFLEADVL----------------QAERDHGAFPQALRR----WLGSAGLP 159
+++ V LEA+VL Q ++D +A RR L A P
Sbjct: 422 EKRLMEQKV--LEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKP 479
Query: 160 SFRNKSPAPVPVTYELPTLYRTEDYFPVD 188
++ +P P P+ ++P+ D D
Sbjct: 480 TYPPMNPIPAPLPPDIPSFNLIGDSLSFD 508
>gi|4557795 neurofibromin 2 isoform 1 [Homo sapiens]
Length = 595
Score = 32.3 bits (72), Expect = 0.28
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 14 NHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLL 73
NH L R+ D + + + A + + + R+ L + EA+ + +E LL
Sbjct: 303 NHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQ-RLAREKQMREEAERTRDELERRLL 361
Query: 74 RLEEFCSLAD--LIRSDTS--------QILEENIPVLKAKLTE----MRGIYAKVDRLEA 119
+++E ++A+ L+RS+ + QI EE +L K E M+ I A R E
Sbjct: 362 QMKEEATMANEALMRSEETADLLAEKAQITEEEAKLLAQKAAEAEQEMQRIKATAIRTEE 421
Query: 120 FVKMVGHHVAFLEADVL----------------QAERDHGAFPQALRR----WLGSAGLP 159
+++ V LEA+VL Q ++D +A RR L A P
Sbjct: 422 EKRLMEQKV--LEAEVLALKMAEESERRAKEADQLKQDLQEAREAERRAKQKLLEIATKP 479
Query: 160 SFRNKSPAPVPVTYELPTLYRTEDYFPVD 188
++ +P P P+ ++P+ D D
Sbjct: 480 TYPPMNPIPAPLPPDIPSFNLIGDSLSFD 508
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 31.6 bits (70), Expect = 0.48
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 2 QRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEA 61
QR GG R G + G PGS P D+P R+ A P P A
Sbjct: 312 QRNGGSGQRSGAHGGRPGSAHSP-----------PDKPSSPSPRVRDKAAAAAPTPPARG 360
Query: 62 KE 63
KE
Sbjct: 361 KE 362
>gi|149408146 TOX high mobility group box family member 2 isoform b
[Homo sapiens]
Length = 488
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 129 AFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKSPAPVPVTYELPTLYR 180
+FL LQA R GA P +L R LGS L + SP P P PTL++
Sbjct: 336 SFLTPSDLQAFRS-GASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQ 386
>gi|149408144 TOX high mobility group box family member 2 isoform a
[Homo sapiens]
Length = 506
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 129 AFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKSPAPVPVTYELPTLYR 180
+FL LQA R GA P +L R LGS L + SP P P PTL++
Sbjct: 354 SFLTPSDLQAFRS-GASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQ 404
>gi|149408141 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 129 AFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKSPAPVPVTYELPTLYR 180
+FL LQA R GA P +L R LGS L + SP P P PTL++
Sbjct: 312 SFLTPSDLQAFRS-GASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQ 362
>gi|14249636 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 129 AFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKSPAPVPVTYELPTLYR 180
+FL LQA R GA P +L R LGS L + SP P P PTL++
Sbjct: 312 SFLTPSDLQAFRS-GASPASLARTLGSKSLLPGLSASPPPPPSFPLSPTLHQ 362
>gi|157743282 synaptonemal complex central element protein 2 [Homo
sapiens]
Length = 218
Score = 30.4 bits (67), Expect = 1.1
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 81 LADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAFVKMVGHHVAFLEADV-LQAE 139
L + + QI ++ +++ KL E AK+ LE +K V H V + D+ LQ E
Sbjct: 106 LTEKLEERIYQIYNDHNKIIQEKLQEFTQKMAKISHLETELKQVCHSVETVYKDLCLQPE 165
Query: 140 RDHGAFPQALR-RWLGSAGLPSFRNKSPAPVPVTYELPTLY 179
Q+LR RW G R KSP P P + P ++
Sbjct: 166 -------QSLRLRW----GPDHSRGKSP-PRPGNSQPPDVF 194
>gi|153945846 inositol 1,4,5-triphosphate receptor, type 3 [Homo
sapiens]
Length = 2671
Score = 30.0 bits (66), Expect = 1.4
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 52 FLTPEPGAEAKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIY 111
FL P PG ++ E + ++G+L RL + C + + +R ++L +N+ K L ++ Y
Sbjct: 1157 FLHP-PGEKSSENYQIVKGILERLNKMCGVGEQMRKKQQRLL-KNMDAHKVMLDLLQIPY 1214
Query: 112 AKVD 115
K D
Sbjct: 1215 DKGD 1218
>gi|4557719 DNA ligase I [Homo sapiens]
Length = 919
Score = 29.3 bits (64), Expect = 2.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 20 SLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEG 70
S+ +P+ L + +Q +P R + L+ F TP A KEV+E G
Sbjct: 199 SVSEPEVATKQELQEEEEQTKPPRRAPKTLSSFFTPRKPAVKKEVKEEEPG 249
>gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens]
Length = 307
Score = 29.3 bits (64), Expect = 2.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 10 RPGRNHG-LPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAK 62
RPG G PGS R+P L ++ D+ + EP SG+ A+ L P G A+
Sbjct: 2 RPGLFKGQAPGSRRRPT-AGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAAR 54
>gi|14861860 testicular acid phosphatase precursor [Homo sapiens]
Length = 426
Score = 29.3 bits (64), Expect = 2.4
Identities = 23/67 (34%), Positives = 29/67 (43%)
Query: 16 GLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLLRL 75
G P + +P PV + + D PMRS R L AE +E E G L RL
Sbjct: 130 GSPEARWRPIPVHTVPVAEDKLLRFPMRSCPRYHELLREATEAAEYQEALEGWTGFLSRL 189
Query: 76 EEFCSLA 82
E F L+
Sbjct: 190 ENFTGLS 196
>gi|148612801 KIAA1009 protein [Homo sapiens]
Length = 1403
Score = 29.3 bits (64), Expect = 2.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 32 LLVDADQPEPMRSGARELALFLTPEPGAEAKEVEET----IEGMLLRLEEFCSLADLIRS 87
L VD ++ + R A++ ++T E E K +EET I + RL+ + +L+
Sbjct: 815 LEVDFEKMKKERDQAKDQIAYVTGEKLYEIKILEETHKQEISRLQKRLQWYAENQELLDK 874
Query: 88 DTSQILEENIPVLKAKL 104
D ++ E N + K KL
Sbjct: 875 DALRLREANEEIEKLKL 891
>gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens]
Length = 3056
Score = 28.9 bits (63), Expect = 3.1
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 20 SLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPE-PGAEAKEVEETIEGMLLRLEEF 78
S R D L++L+D+ EP +S + L L E PG E E + +L L
Sbjct: 917 SFRAADIRRKLLMLIDSSTLEPTKSLHLHMYLMLLKELPGEEYPLPMEDVLELLKPLSNV 976
Query: 79 CSLADLIRSDTSQILEENIPVLK 101
CSL + IL + V+K
Sbjct: 977 CSLYRRDQDVCKTILNHVLHVVK 999
>gi|169218268 PREDICTED: similar to Serine-protein kinase ATM,
partial [Homo sapiens]
Length = 2934
Score = 28.9 bits (63), Expect = 3.1
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 20 SLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPE-PGAEAKEVEETIEGMLLRLEEF 78
S R D L++L+D+ EP +S + L L E PG E E + +L L
Sbjct: 795 SFRAADIRRKLLMLIDSSTLEPTKSLHLHMYLMLLKELPGEEYPLPMEDVLELLKPLSNV 854
Query: 79 CSLADLIRSDTSQILEENIPVLK 101
CSL + IL + V+K
Sbjct: 855 CSLYRRDQDVCKTILNHVLHVVK 877
>gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]
Length = 1194
Score = 28.9 bits (63), Expect = 3.1
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 47 RELALFLTPEPGAEAKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEE----------- 95
R+L++ L E A KE+ E +L R EE L R++T +LE
Sbjct: 72 RQLSIALPQEFAALTKELNLCREQLLEREEEIAEL-KAERNNTRLLLEHLECLVSRHERS 130
Query: 96 -NIPVLKAKLTEMRGIYAKVDRLEAFVKMVGHHVAFLE 132
+ V+K + G+ ++V+ L+A + HH A E
Sbjct: 131 LRMTVVKRQAQSPGGVSSEVEVLKALKSLFEHHKALDE 168
>gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 28.1 bits (61), Expect = 5.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 147 QALRRWLGSAGLPSFRNKSPAPV-----------PVTYELPTLYRTEDYFPVDAGEAQHH 195
QA RR G+ P+ + ++PAP+ L + R+ P AQ H
Sbjct: 139 QAARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSPGAPPAGRSLAQPH 198
Query: 196 PRTCP 200
P++CP
Sbjct: 199 PQSCP 203
>gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo
sapiens]
Length = 250
Score = 28.1 bits (61), Expect = 5.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 147 QALRRWLGSAGLPSFRNKSPAPV-----------PVTYELPTLYRTEDYFPVDAGEAQHH 195
QA RR G+ P+ + ++PAP+ L + R+ P AQ H
Sbjct: 92 QAARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSPGAPPAGRSLAQPH 151
Query: 196 PRTCP 200
P++CP
Sbjct: 152 PQSCP 156
>gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo
sapiens]
Length = 438
Score = 28.1 bits (61), Expect = 5.3
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 6 GGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPM 42
GG PGR G PG LR P P A V+AD+ P+
Sbjct: 319 GGGFGPGRRKGSPGRLRGP-PGADEAEEVEADEQHPL 354
>gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo
sapiens]
Length = 250
Score = 28.1 bits (61), Expect = 5.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 147 QALRRWLGSAGLPSFRNKSPAPV-----------PVTYELPTLYRTEDYFPVDAGEAQHH 195
QA RR G+ P+ + ++PAP+ L + R+ P AQ H
Sbjct: 92 QAARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSPGAPPAGRSLAQPH 151
Query: 196 PRTCP 200
P++CP
Sbjct: 152 PQSCP 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,297,710
Number of Sequences: 37866
Number of extensions: 489343
Number of successful extensions: 1457
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 46
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.