Guide to the Human Genome
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Name: BCAS4 Sequence: fasta or formatted (211aa) NCBI GI: 58294160
Description:

breast carcinoma amplified sequence 4 isoform a

Referenced in:

Lysosomes and Related Organelles
Mammary Tissues

Other entries for this name:
alt prot [158aa] breast carcinoma amplified sequence 4 isoform c
alt prot [203aa] breast carcinoma amplified sequence 4 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         24           2
 C cysteine            1.9          4           1
 D aspartate           4.7         10           1
 E glutamate           8.5         18           2
 F phenylalanine       2.8          6           1
 G glycine             8.5         18           3
 H histidine           2.4          5           2
 I isoleucine          3.3          7           1
 K lysine              2.4          5           1
 L leucine            11.8         25           2
 M methionine          2.8          6           1
 N asparagine          1.9          4           1
 P proline             7.1         15           1
 Q glutamine           3.3          7           1
 R arginine            8.5         18           2
 S serine              6.2         13           2
 T threonine           4.7         10           1
 V valine              6.6         14           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   breast carcinoma amplified sequence 4 isoform a [Hom... 
BCAS4                 0.759   breast carcinoma amplified sequence 4 isoform b [Hom...
BCAS4                 0.529   breast carcinoma amplified sequence 4 isoform c [Hom...
CNO                   0.182   cappuccino 
FAM76A                0.078   hypothetical protein LOC199870 isoform 2 
FAM76A                0.078   hypothetical protein LOC199870 isoform 1 
LOC100293423          0.078   PREDICTED: hypothetical protein 
LOC100290837          0.078   PREDICTED: hypothetical protein XP_002347267 
MAP4K1                0.078   mitogen-activated protein kinase kinase kinase kinase...
LOC100289388          0.076   PREDICTED: hypothetical protein XP_002343124 
ZMAT1                 0.076   zinc finger, matrin type 1 isoform 1 
NEK4                  0.073   NIMA-related kinase 4 
ADRA1A                0.073   alpha-1A-adrenergic receptor isoform 2 
C11orf80              0.061   hypothetical protein LOC79703 
RPGRIP1L              0.061   RPGRIP1-like isoform a 
ARGFX                 0.056   arginine-fifty homeobox 
IL12RB1               0.053   interleukin 12 receptor, beta 1 isoform 2 precursor ...
KCNRG                 0.051   potassium channel regulator isoform 2 
SLC36A3               0.051   solute carrier family 36, member 3 isoform 1 
PACRG                 0.051   parkin co-regulated gene protein isoform 1 
SYT14                 0.051   synaptotagmin XIV isoform 2 
SYT14                 0.051   synaptotagmin XIV isoform 1 
IFT20                 0.046   intraflagellar transport protein IFT20 
SORBS1                0.043   sorbin and SH3 domain containing 1 isoform 4 
TRIM61                0.043   tripartite motif-containing 61 
CCNJL                 0.041   cyclin J-like 
TEX11                 0.041   testis expressed sequence 11 isoform 1 
NOS3                  0.038   nitric oxide synthase 3 isoform 4 
LOC285501             0.038   hypothetical protein LOC285501 
MAD2L1BP              0.035   MAD2L1 binding protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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