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Search of human proteins with 6005745
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6005745 dynactin 3 isoform 1 [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6005745 dynactin 3 isoform 1 [Homo sapiens] 360 e-100
gi|13259514 dynactin 3 isoform 2 [Homo sapiens] 266 8e-72
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 33 0.11
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 33 0.11
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 33 0.11
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 33 0.11
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 33 0.14
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 33 0.18
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 33 0.18
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 33 0.18
gi|5032285 dystrophin Dp427l isoform [Homo sapiens] 33 0.18
gi|5032283 dystrophin Dp427m isoform [Homo sapiens] 33 0.18
gi|95089461 discs large homolog 5 [Homo sapiens] 32 0.41
gi|57529222 basic helix-loop-helix domain containing, class B, 4... 31 0.54
gi|109148552 keratin 3 [Homo sapiens] 31 0.54
gi|209862789 microtubule associated monoxygenase, calponin and L... 31 0.70
gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens] 30 0.92
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 30 1.6
gi|41152097 DNA segment on chromosome X and Y (unique) 155 expre... 30 1.6
gi|110630018 eukaryotic translation initiation factor 4 gamma, 2... 30 1.6
gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i... 30 1.6
gi|4507467 transforming growth factor, beta-induced, 68kDa precu... 29 2.0
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 29 2.0
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 29 2.0
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 29 2.0
gi|149363632 coiled-coil domain containing 29 [Homo sapiens] 29 2.0
gi|28195388 RAB11 family interacting protein 4 (class II) [Homo ... 29 2.0
gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens] 29 2.0
gi|171460914 dynamin 1-like isoform 1 [Homo sapiens] 29 2.7
gi|171460918 dynamin 1-like isoform 3 [Homo sapiens] 29 2.7
>gi|6005745 dynactin 3 isoform 1 [Homo sapiens]
Length = 186
Score = 360 bits (924), Expect = e-100
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK 60
MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
Sbjct: 1 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK 60
Query: 61 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP 120
IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP
Sbjct: 61 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP 120
Query: 121 EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ 180
EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ
Sbjct: 121 EHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ 180
Query: 181 VKPAEE 186
VKPAEE
Sbjct: 181 VKPAEE 186
>gi|13259514 dynactin 3 isoform 2 [Homo sapiens]
Length = 176
Score = 266 bits (680), Expect = 8e-72
Identities = 141/154 (91%), Positives = 147/154 (95%), Gaps = 1/154 (0%)
Query: 1 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK 60
MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK
Sbjct: 1 MAGLTDLQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKK 60
Query: 61 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP 120
IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP
Sbjct: 61 IEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVP 120
Query: 121 EHAARLQRLAQIHIQQQDQC-VEITEESKALLEE 153
EHAARLQRLAQIHIQQQ V + +E+ +L+E+
Sbjct: 121 EHAARLQRLAQIHIQQQAPWGVGVRDEAGSLVED 154
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 33.5 bits (75), Expect = 0.11
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 10 LQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIKYLD 69
LQA++ EL+ + A+ ++ L ++ + ++ ++++ L I DL + LD
Sbjct: 1074 LQAQIAELKMQL-----AKKEEELQAALARLDDEIAQKNNALKKIRELEGHISDLQEDLD 1128
Query: 70 PEYIDRIAIPDASKLQFILAEE--------QFILSQVALLEQVNAL----VPMLDSAHIK 117
E R A A K + L EE + L A +++ A V +L A +
Sbjct: 1129 SE---RAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDE 1185
Query: 118 AVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQ 164
H A++Q + Q H Q ++ E E+ K +K L K+
Sbjct: 1186 ETRSHEAQVQEMRQKHAQAVEELTEQLEQFKRAKANLDKNKQTLEKE 1232
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 33.5 bits (75), Expect = 0.11
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 10 LQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIKYLD 69
LQA++ EL+ + A+ ++ L ++ + ++ ++++ L I DL + LD
Sbjct: 1081 LQAQIAELKMQL-----AKKEEELQAALARLDDEIAQKNNALKKIRELEGHISDLQEDLD 1135
Query: 70 PEYIDRIAIPDASKLQFILAEE--------QFILSQVALLEQVNAL----VPMLDSAHIK 117
E R A A K + L EE + L A +++ A V +L A +
Sbjct: 1136 SE---RAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDE 1192
Query: 118 AVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQ 164
H A++Q + Q H Q ++ E E+ K +K L K+
Sbjct: 1193 ETRSHEAQVQEMRQKHAQAVEELTEQLEQFKRAKANLDKNKQTLEKE 1239
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 33.5 bits (75), Expect = 0.11
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 10 LQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIKYLD 69
LQA++ EL+ + A+ ++ L ++ + ++ ++++ L I DL + LD
Sbjct: 1081 LQAQIAELKMQL-----AKKEEELQAALARLDDEIAQKNNALKKIRELEGHISDLQEDLD 1135
Query: 70 PEYIDRIAIPDASKLQFILAEE--------QFILSQVALLEQVNAL----VPMLDSAHIK 117
E R A A K + L EE + L A +++ A V +L A +
Sbjct: 1136 SE---RAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDE 1192
Query: 118 AVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQ 164
H A++Q + Q H Q ++ E E+ K +K L K+
Sbjct: 1193 ETRSHEAQVQEMRQKHAQAVEELTEQLEQFKRAKANLDKNKQTLEKE 1239
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 33.5 bits (75), Expect = 0.11
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 20/167 (11%)
Query: 10 LQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIKYLD 69
LQA++ EL+ + A+ ++ L ++ + ++ ++++ L I DL + LD
Sbjct: 1074 LQAQIAELKMQL-----AKKEEELQAALARLDDEIAQKNNALKKIRELEGHISDLQEDLD 1128
Query: 70 PEYIDRIAIPDASKLQFILAEE--------QFILSQVALLEQVNAL----VPMLDSAHIK 117
E R A A K + L EE + L A +++ A V +L A +
Sbjct: 1129 SE---RAARNKAEKQKRDLGEELEALKTELEDTLDSTATQQELRAKREQEVTVLKKALDE 1185
Query: 118 AVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQ 164
H A++Q + Q H Q ++ E E+ K +K L K+
Sbjct: 1186 ETRSHEAQVQEMRQKHAQAVEELTEQLEQFKRAKANLDKNKQTLEKE 1232
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 33.1 bits (74), Expect = 0.14
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 23 GPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIKYLDP-----EYIDRIA 77
G GG+ S + K Q AL + RER +++ DL LD Y +
Sbjct: 222 GSGGSSSSSSSSSKKSKEQKALRLNINARER-----RRMHDLNDALDELRAVIPYAHSPS 276
Query: 78 IPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAH---IKAVPEHAARLQRLAQIH 133
+ SK+ +L + +IL Q LE++ LV L+ ++P AA A +H
Sbjct: 277 VRKLSKIATLLLAKNYILMQAQALEEMRRLVAYLNQGQAISAASLPSSAAAAAAAAALH 335
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 32.7 bits (73), Expect = 0.18
Identities = 36/172 (20%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 8 QRLQARVEELE-RWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIK 66
++ Q+ EE+E RW + S ++ + K++ + + + ++ L K + ++
Sbjct: 1008 RKYQSEFEEIEGRW------KKLSSQLVEHCQKLEEQMNKLRKIQNHIQTLKKWMAEVDV 1061
Query: 67 YLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLE-QVNALVPMLDSAHIKAVPEHAAR 125
+L E+ A+ D+ L+ L + + ++S + ++ +N++ +A PE A+R
Sbjct: 1062 FLKEEWP---ALGDSEILKKQLKQCRLLVSDIQTIQPSLNSVNEGGQKIKNEAEPEFASR 1118
Query: 126 LQ-RLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLE 176
L+ L +++ Q C ++ +AL K T+ L K + E + Q E
Sbjct: 1119 LETELKELNTQWDHMCQQVYARKEALKGGLEK-TVSLQKDLSEMHEWMTQAE 1169
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 32.7 bits (73), Expect = 0.18
Identities = 36/172 (20%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 8 QRLQARVEELE-RWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIK 66
++ Q+ EE+E RW + S ++ + K++ + + + ++ L K + ++
Sbjct: 893 RKYQSEFEEIEGRW------KKLSSQLVEHCQKLEEQMNKLRKIQNHIQTLKKWMAEVDV 946
Query: 67 YLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLE-QVNALVPMLDSAHIKAVPEHAAR 125
+L E+ A+ D+ L+ L + + ++S + ++ +N++ +A PE A+R
Sbjct: 947 FLKEEWP---ALGDSEILKKQLKQCRLLVSDIQTIQPSLNSVNEGGQKIKNEAEPEFASR 1003
Query: 126 LQ-RLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLE 176
L+ L +++ Q C ++ +AL K T+ L K + E + Q E
Sbjct: 1004 LETELKELNTQWDHMCQQVYARKEALKGGLEK-TVSLQKDLSEMHEWMTQAE 1054
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 32.7 bits (73), Expect = 0.18
Identities = 36/172 (20%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 8 QRLQARVEELE-RWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIK 66
++ Q+ EE+E RW + S ++ + K++ + + + ++ L K + ++
Sbjct: 1012 RKYQSEFEEIEGRW------KKLSSQLVEHCQKLEEQMNKLRKIQNHIQTLKKWMAEVDV 1065
Query: 67 YLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLE-QVNALVPMLDSAHIKAVPEHAAR 125
+L E+ A+ D+ L+ L + + ++S + ++ +N++ +A PE A+R
Sbjct: 1066 FLKEEWP---ALGDSEILKKQLKQCRLLVSDIQTIQPSLNSVNEGGQKIKNEAEPEFASR 1122
Query: 126 LQ-RLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLE 176
L+ L +++ Q C ++ +AL K T+ L K + E + Q E
Sbjct: 1123 LETELKELNTQWDHMCQQVYARKEALKGGLEK-TVSLQKDLSEMHEWMTQAE 1173
>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
Length = 3562
Score = 32.7 bits (73), Expect = 0.18
Identities = 36/172 (20%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 8 QRLQARVEELE-RWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIK 66
++ Q+ EE+E RW + S ++ + K++ + + + ++ L K + ++
Sbjct: 893 RKYQSEFEEIEGRW------KKLSSQLVEHCQKLEEQMNKLRKIQNHIQTLKKWMAEVDV 946
Query: 67 YLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLE-QVNALVPMLDSAHIKAVPEHAAR 125
+L E+ A+ D+ L+ L + + ++S + ++ +N++ +A PE A+R
Sbjct: 947 FLKEEWP---ALGDSEILKKQLKQCRLLVSDIQTIQPSLNSVNEGGQKIKNEAEPEFASR 1003
Query: 126 LQ-RLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLE 176
L+ L +++ Q C ++ +AL K T+ L K + E + Q E
Sbjct: 1004 LETELKELNTQWDHMCQQVYARKEALKGGLEK-TVSLQKDLSEMHEWMTQAE 1054
>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
Length = 3685
Score = 32.7 bits (73), Expect = 0.18
Identities = 36/172 (20%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 8 QRLQARVEELE-RWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIK 66
++ Q+ EE+E RW + S ++ + K++ + + + ++ L K + ++
Sbjct: 1016 RKYQSEFEEIEGRW------KKLSSQLVEHCQKLEEQMNKLRKIQNHIQTLKKWMAEVDV 1069
Query: 67 YLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLE-QVNALVPMLDSAHIKAVPEHAAR 125
+L E+ A+ D+ L+ L + + ++S + ++ +N++ +A PE A+R
Sbjct: 1070 FLKEEWP---ALGDSEILKKQLKQCRLLVSDIQTIQPSLNSVNEGGQKIKNEAEPEFASR 1126
Query: 126 LQ-RLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLE 176
L+ L +++ Q C ++ +AL K T+ L K + E + Q E
Sbjct: 1127 LETELKELNTQWDHMCQQVYARKEALKGGLEK-TVSLQKDLSEMHEWMTQAE 1177
>gi|95089461 discs large homolog 5 [Homo sapiens]
Length = 1919
Score = 31.6 bits (70), Expect = 0.41
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 37/141 (26%)
Query: 52 ERVKILYKKIEDLIKYLDPEYIDRIAI--PDASKLQFILAEEQFILSQVALLEQVNALVP 109
++++++ K + L K Y +++AI D S+L+ + E Q +L Q +L Q
Sbjct: 308 DKLEVVKKDYDALRK----RYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQR---- 359
Query: 110 MLDSAHIKAVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWD 169
D+A IQ Q QC +A+ E NK T + +QW+
Sbjct: 360 --DTA-------------------IQLQHQCALSLRRFEAIHHELNKAT--AQNKDLQWE 396
Query: 170 ELLCQLE----AATQVKPAEE 186
L Q E TQVK A+E
Sbjct: 397 MELLQSELTELRTTQVKTAKE 417
>gi|57529222 basic helix-loop-helix domain containing, class B, 4
[Homo sapiens]
Length = 225
Score = 31.2 bits (69), Expect = 0.54
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 23 GPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDAS 82
GPG A R+ +++++ + +R R+ L ++ L + Y ++ S
Sbjct: 84 GPGSAADGRRRPREQRSLRLSIN--ARERRRMHDLNDALDGLRAVIP--YAHSPSVRKLS 139
Query: 83 KLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVPEHAARLQRLAQ 131
K+ +L + +IL Q L+++ LV L+ A P +AA L Q
Sbjct: 140 KIATLLLAKNYILMQAQALDEMRRLVAFLNQGQGLAAPVNAAPLTPFGQ 188
>gi|109148552 keratin 3 [Homo sapiens]
Length = 628
Score = 31.2 bits (69), Expect = 0.54
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 44 LGNISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAE---EQFILSQVAL 100
L NI +R R+ K +EDL++ +Y D I A++ +F+ + + +++V L
Sbjct: 262 LDNILGERGRLDSELKNMEDLVEDFKKKYEDEINKRTAAENEFVTLKKDVDSAYMNKVEL 321
Query: 101 LEQVNALVPMLD 112
+V+AL+ +D
Sbjct: 322 QAKVDALIDEID 333
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 30.8 bits (68), Expect = 0.70
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 60 KIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQ-VALLEQVNALVPMLDSAHIK 117
++ED L E +R+A+ D K + L+EE+ IL++ + ++EQ ++LV +L+ ++
Sbjct: 1922 ELEDRQSRLQQELRERMAVEDHLKTEEELSEEKQILNEMLEVVEQRDSLVALLEEQRLR 1980
>gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens]
Length = 1316
Score = 30.4 bits (67), Expect = 0.92
Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 23/135 (17%)
Query: 44 LGNISSKRERVKILYKKIEDLIKYLDPEYID---RIAIPD-----ASKLQFILAEEQFIL 95
LGN + K+E V++ + E L+K L P+ + ++ I + A+K + + +
Sbjct: 1087 LGNSTEKQESVQLAVRTAEKLLKELKPQTVQGHVQLRIMENYCLMATKQKSNVEQALNTF 1146
Query: 96 SQVALLEQ--VNALVPMLDSAHI-KAVPEHAARLQRLAQIHIQQQDQCVEITEESKALLE 152
+++A E+ + AL+ M + I K P +L+R+A+++ D E
Sbjct: 1147 TEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAID------------AE 1194
Query: 153 EYNKTTMLLSKQFVQ 167
E+ K+ +LL+ ++Q
Sbjct: 1195 EFEKSWLLLADIYIQ 1209
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 29.6 bits (65), Expect = 1.6
Identities = 31/167 (18%), Positives = 69/167 (41%), Gaps = 14/167 (8%)
Query: 7 LQRLQARVEELERWVYGPGGARGSRKVADGLVKVQVALGNISSKRERVKILYKKIEDLIK 66
+ LQA++ EL+ + A+ ++ L +V+ + ++++ L +I +L +
Sbjct: 1064 IAELQAQIAELKMQL-----AKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQE 1118
Query: 67 YLDPEYIDRIAIPDASK-----LQFILAEEQFILSQVALLEQVNAL----VPMLDSAHIK 117
L+ E R + L+ + E + L A +++ + V +L +
Sbjct: 1119 DLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEE 1178
Query: 118 AVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQ 164
H A++Q + Q H Q ++ E E++K + K L +
Sbjct: 1179 EAKTHEAQIQEMRQKHSQAVEELAEQLEQTKRVKANLEKAKQTLENE 1225
>gi|41152097 DNA segment on chromosome X and Y (unique) 155
expressed sequence isoform 1 [Homo sapiens]
Length = 695
Score = 29.6 bits (65), Expect = 1.6
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 59 KKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKA 118
+K E+ ++ + + DR + KL+ + AEEQ L + LE+ L+ + I+
Sbjct: 316 RKREEKLRKREQKQRDRELRRNQKKLEKLQAEEQKQLQEKIKLEERKLLLAQRNLQSIRL 375
Query: 119 VPEHAARL---------QRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQ 164
+ E +R Q+ ++ +QQQ++ + E +EE + + L ++
Sbjct: 376 IAELLSRAKAVKLREQEQKEEKLRLQQQEERRRLQEAELRRVEEEKERALGLQRK 430
>gi|110630018 eukaryotic translation initiation factor 4 gamma, 2
isoform 2 [Homo sapiens]
Length = 869
Score = 29.6 bits (65), Expect = 1.6
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 43 ALGNISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALL 101
A N ++++ER +++K+ ++ L PE D++ + +L + E + IL V LL
Sbjct: 63 AANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCL----ELLNVGVESKLILKGVILL 117
>gi|4503539 eukaryotic translation initiation factor 4 gamma, 2
isoform 1 [Homo sapiens]
Length = 907
Score = 29.6 bits (65), Expect = 1.6
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 43 ALGNISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALL 101
A N ++++ER +++K+ ++ L PE D++ + +L + E + IL V LL
Sbjct: 63 AANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCL----ELLNVGVESKLILKGVILL 117
>gi|4507467 transforming growth factor, beta-induced, 68kDa
precursor [Homo sapiens]
Length = 683
Score = 29.3 bits (64), Expect = 2.0
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 72 YIDRIAIPDASKLQFILAEEQFILSQVALLEQVN-----------ALVPMLDSAHIKAVP 120
YID + IPD++K F LA E + + + L Q L+ L+S P
Sbjct: 366 YIDELLIPDSAKTLFELAAESDVSTAIDLFRQAGLGNHLSGSERLTLLAPLNSVFKDGTP 425
Query: 121 EHAARLQRLAQIHI 134
A + L + HI
Sbjct: 426 PIDAHTRNLLRNHI 439
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 29.3 bits (64), Expect = 2.0
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 51 RERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPM 110
R++ + L K++E + K+LD + IDR E ++ LEQ +VP
Sbjct: 2052 RQQNQALEKQLEKMRKFLDEQAIDR------------EHERDVFQQEIQKLEQQLKVVP- 2098
Query: 111 LDSAHIKAVPEHAAR-LQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSK 163
+ + EH R +++LA ++ D+C E+ + L + + + K
Sbjct: 2099 ----RFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEK 2148
Score = 27.3 bits (59), Expect = 7.8
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 69 DPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVPEHAARLQR 128
D +I R +I D + + A Q +L++ L + LV + EH +
Sbjct: 1556 DKTFIVRQSIHDEISVSSMDASRQLMLNEEQLEDMRQELV--------RQYQEHQQATEL 1607
Query: 129 LAQIHIQQQDQCVE----ITEESKALLEEYNKTTMLLSKQFVQWDE--LLCQLEAATQVK 182
L Q H++Q ++ E + EE K L + + + + ++ V E LL +LEA Q+
Sbjct: 1608 LRQAHMRQMERQREDQEQLQEEIKRLNRQLAQRSSIDNENLVSERERVLLEELEALKQLS 1667
Query: 183 PA 184
A
Sbjct: 1668 LA 1669
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 29.3 bits (64), Expect = 2.0
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 51 RERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPM 110
R++ + L K++E + K+LD + IDR E ++ LEQ +VP
Sbjct: 2052 RQQNQALEKQLEKMRKFLDEQAIDR------------EHERDVFQQEIQKLEQQLKVVP- 2098
Query: 111 LDSAHIKAVPEHAAR-LQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSK 163
+ + EH R +++LA ++ D+C E+ + L + + + K
Sbjct: 2099 ----RFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEK 2148
Score = 27.3 bits (59), Expect = 7.8
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 69 DPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVPEHAARLQR 128
D +I R +I D + + A Q +L++ L + LV + EH +
Sbjct: 1556 DKTFIVRQSIHDEISVSSMDASRQLMLNEEQLEDMRQELV--------RQYQEHQQATEL 1607
Query: 129 LAQIHIQQQDQCVE----ITEESKALLEEYNKTTMLLSKQFVQWDE--LLCQLEAATQVK 182
L Q H++Q ++ E + EE K L + + + + ++ V E LL +LEA Q+
Sbjct: 1608 LRQAHMRQMERQREDQEQLQEEIKRLNRQLAQRSSIDNENLVSERERVLLEELEALKQLS 1667
Query: 183 PA 184
A
Sbjct: 1668 LA 1669
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 29.3 bits (64), Expect = 2.0
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 43 ALGNISSKRERVKIL---YKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVA 99
A +++++E++ +L Y+K ++ K L ++ R + A++ EE+ L+Q
Sbjct: 1003 AAQELAAEKEKISVLQNNYEKSQETFKQLQSDFYGRESELLATRQDLKSVEEKLSLAQED 1062
Query: 100 LLE------QVNALVPMLDSAHIKAVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEE 153
L+ N L+ L +A + A + Q+L + QD E + + K L+ E
Sbjct: 1063 LISNRNQIGNQNKLIQELKTAKATLEQDSAKKEQQLQERCKALQDIQKEKSLKEKELVNE 1122
Query: 154 YNK 156
+K
Sbjct: 1123 KSK 1125
>gi|149363632 coiled-coil domain containing 29 [Homo sapiens]
Length = 161
Score = 29.3 bits (64), Expect = 2.0
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 126 LQRLAQIHIQQQDQCVE-ITEESKALLEEYNKTTMLLS 162
+++L +IH+Q + CVE IT E+K ++ N + LL+
Sbjct: 122 VEKLEEIHLQMELDCVEQITRETKRIVAVLNTCSRLLT 159
>gi|28195388 RAB11 family interacting protein 4 (class II) [Homo
sapiens]
Length = 637
Score = 29.3 bits (64), Expect = 2.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 59 KKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNAL 107
+++E L+KYLDP + RI D + F + + +L V +E L
Sbjct: 52 EEVEKLVKYLDPNDLGRINFKDFCRGVFAMKGCEELLKDVLSVESAGTL 100
>gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]
Length = 1918
Score = 29.3 bits (64), Expect = 2.0
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 39 KVQVALGNISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQV 98
K+Q + G I++ +ER+K L ++ + L+ L PE D L+ LA++ + +
Sbjct: 1649 KIQGSAGEIATSQERLKALLER-KSLLHQLLPE--------DFLMLKEKLAQKNLSVKDL 1699
Query: 99 ALLEQ----VNALVPMLDSAHIKAVPEHAARLQRLAQIHIQQQDQCVEIT-EESKALLEE 153
L+E + L + DS V E RL Q+H + + T +E L E
Sbjct: 1700 GLVENYISFYDHLASLWDSLKKMHVLEEKRVRTRLEQVHEWLAKKRLSFTSQELSDLRSE 1759
Query: 154 YNKTTMLLS 162
+ T L++
Sbjct: 1760 IQRLTYLVN 1768
>gi|171460914 dynamin 1-like isoform 1 [Homo sapiens]
Length = 736
Score = 28.9 bits (63), Expect = 2.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 129 LAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ 180
L +H+ Q+D+ EE+ EE+ K +K + +DE+ ++E T+
Sbjct: 65 LQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETE 116
>gi|171460918 dynamin 1-like isoform 3 [Homo sapiens]
Length = 699
Score = 28.9 bits (63), Expect = 2.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 129 LAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLEAATQ 180
L +H+ Q+D+ EE+ EE+ K +K + +DE+ ++E T+
Sbjct: 65 LQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETE 116
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,160,223
Number of Sequences: 37866
Number of extensions: 224501
Number of successful extensions: 1061
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1038
Number of HSP's gapped (non-prelim): 80
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.