Guide to the Human Genome
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Name: TGFBI Sequence: fasta or formatted (683aa) NCBI GI: 4507467
Description:

transforming growth factor, beta-induced, 68kDa precursor

Referenced in:

Bone and Related Tissues
TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         61           2
 C cysteine            1.6         11           2
 D aspartate           4.0         27           1
 E glutamate           6.1         42           1
 F phenylalanine       2.3         16           1
 G glycine             7.0         48           2
 H histidine           2.8         19           2
 I isoleucine          5.9         40           2
 K lysine              4.8         33           2
 L leucine            12.7         87           2
 M methionine          2.0         14           1
 N asparagine          5.9         40           2
 P proline             4.5         31           2
 Q glutamine           3.2         22           2
 R arginine            5.4         37           2
 S serine              6.0         41           1
 T threonine           6.7         46           3
 V valine              6.9         47           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.8         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transforming growth factor, beta-induced, 68kDa precu... 
POSTN                 0.434   periostin, osteoblast specific factor isoform 3 [Ho...
POSTN                 0.433   periostin, osteoblast specific factor isoform 4 [Ho...
POSTN                 0.433   periostin, osteoblast specific factor isoform 2 [Ho...
POSTN                 0.433   periostin, osteoblast specific factor isoform 1 [Ho...
STAB2                 0.041   stabilin 2 precursor 
STAB1                 0.032   stabilin 1 precursor 
POLR3A                0.007   polymerase (RNA) III (DNA directed) polypeptide A, 1...
FHOD1                 0.005   formin homology 2 domain containing 1 
SLC27A2               0.004   solute carrier family 27 (fatty acid transporter), ...
SLC27A2               0.004   solute carrier family 27 (fatty acid transporter), ...
ATP1A4                0.004   Na+/K+ -ATPase alpha 4 subunit isoform 1 
DDX23                 0.004   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
C12orf41              0.004   hypothetical protein LOC54934 
OTUD1                 0.004   OTU domain containing 1 
PRMT5                 0.004   protein arginine methyltransferase 5 isoform b [Homo...
PRMT5                 0.004   protein arginine methyltransferase 5 isoform a [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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