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Search of human proteins with 59933284
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|59933284 RUN domain containing 2B [Homo sapiens]
(249 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|59933284 RUN domain containing 2B [Homo sapiens] 497 e-141
gi|116292170 RUN domain containing 2A [Homo sapiens] 420 e-118
gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo sa... 48 7e-06
gi|239757977 PREDICTED: similar to CYorf16 protein [Homo sapiens] 47 2e-05
gi|239752473 PREDICTED: hypothetical protein XP_002348288 [Homo ... 47 2e-05
gi|239747029 PREDICTED: hypothetical protein XP_002343910 [Homo ... 47 2e-05
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 47 2e-05
gi|238908517 colony stimulating factor 2 receptor alpha chain is... 45 6e-05
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 45 8e-05
gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo... 43 3e-04
gi|193794843 BEN domain containing 2 [Homo sapiens] 42 5e-04
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 41 0.001
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 41 0.001
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 41 0.001
gi|149588643 zinc finger protein 283 [Homo sapiens] 40 0.002
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s... 40 0.002
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s... 40 0.002
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 39 0.006
gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4 pr... 39 0.006
gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4 p... 39 0.006
gi|40789270 zinc finger protein 573 [Homo sapiens] 39 0.006
gi|169217402 PREDICTED: similar to CYorf16 protein [Homo sapiens] 38 0.009
gi|169217327 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|148612849 kinesin heavy chain member 2 isoform 2 [Homo sapiens] 38 0.009
gi|148612877 kinesin heavy chain member 2 isoform 1 [Homo sapiens] 38 0.009
gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens] 37 0.012
gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo sapi... 37 0.012
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 37 0.021
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 36 0.027
gi|16445033 ACRC protein [Homo sapiens] 35 0.047
>gi|59933284 RUN domain containing 2B [Homo sapiens]
Length = 249
Score = 497 bits (1279), Expect = e-141
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQG 60
MDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQG
Sbjct: 1 MDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQG 60
Query: 61 VSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEE 120
VSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEE
Sbjct: 61 VSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEE 120
Query: 121 DEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNR 180
DEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNR
Sbjct: 121 DEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNR 180
Query: 181 EFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHSVTQAGVQWHDLGS 240
EFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHSVTQAGVQWHDLGS
Sbjct: 181 EFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHSVTQAGVQWHDLGS 240
Query: 241 LQPLPPGFR 249
LQPLPPGFR
Sbjct: 241 LQPLPPGFR 249
>gi|116292170 RUN domain containing 2A [Homo sapiens]
Length = 375
Score = 420 bits (1079), Expect = e-118
Identities = 215/223 (96%), Positives = 219/223 (98%), Gaps = 1/223 (0%)
Query: 1 MDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVT-LLKESTQ 59
MDEERSSMLPTMAAG NSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVT LLKESTQ
Sbjct: 153 MDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLKESTQ 212
Query: 60 GVSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDE 119
GVSS+FREITASSA+SILIKPEQETDPLPVVSRNVSADAKCKKERKKKK+VTNIISFDDE
Sbjct: 213 GVSSLFREITASSAVSILIKPEQETDPLPVVSRNVSADAKCKKERKKKKKVTNIISFDDE 272
Query: 120 EDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN 179
EDEQNSGD+FKKTPGAGESSEDNSD SSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN
Sbjct: 273 EDEQNSGDVFKKTPGAGESSEDNSDRSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN 332
Query: 180 REFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK 222
EFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK
Sbjct: 333 GEFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK 375
>gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo
sapiens]
Length = 322
Score = 48.1 bits (113), Expect = 7e-06
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 219 SPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
S + +HSVTQAGVQWH+LGSLQPLP G +
Sbjct: 261 SKKAKWSHSVTQAGVQWHNLGSLQPLPLGLK 291
>gi|239757977 PREDICTED: similar to CYorf16 protein [Homo sapiens]
Length = 140
Score = 46.6 bits (109), Expect = 2e-05
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 225 AHSVTQAGVQWHDLGSLQPLPPGFR 249
+H VTQAGV+WHDLGSLQ LPP F+
Sbjct: 109 SHYVTQAGVKWHDLGSLQTLPPSFK 133
>gi|239752473 PREDICTED: hypothetical protein XP_002348288 [Homo
sapiens]
Length = 140
Score = 46.6 bits (109), Expect = 2e-05
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 225 AHSVTQAGVQWHDLGSLQPLPPGFR 249
+H VTQAGV+WHDLGSLQ LPP F+
Sbjct: 109 SHYVTQAGVKWHDLGSLQTLPPSFK 133
>gi|239747029 PREDICTED: hypothetical protein XP_002343910 [Homo
sapiens]
Length = 228
Score = 46.6 bits (109), Expect = 2e-05
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 225 AHSVTQAGVQWHDLGSLQPLPPGFR 249
+H VTQAGV+WHDLGSLQ LPP F+
Sbjct: 197 SHYVTQAGVKWHDLGSLQTLPPSFK 221
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 46.6 bits (109), Expect = 2e-05
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 209 SGRKHRGHSESPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
S R R + P+ + SV QAGVQW +LGSLQPLPPGF+
Sbjct: 345 SRRVKRREKQFPD---SRSVAQAGVQWRNLGSLQPLPPGFK 382
>gi|238908517 colony stimulating factor 2 receptor alpha chain
isoform f precursor [Homo sapiens]
Length = 434
Score = 45.1 bits (105), Expect = 6e-05
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 224 GAHSVTQAGVQWHDLGSLQPLPP 246
G+HSVTQAGVQWH+LGSLQP P
Sbjct: 316 GSHSVTQAGVQWHNLGSLQPPSP 338
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 44.7 bits (104), Expect = 8e-05
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 226 HSVTQAGVQWHDLGSLQPLPPGFR 249
H +AGVQWHDLGSLQPLPP F+
Sbjct: 21 HKGNKAGVQWHDLGSLQPLPPRFK 44
>gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo
sapiens]
Length = 165
Score = 42.7 bits (99), Expect = 3e-04
Identities = 18/22 (81%), Positives = 19/22 (86%)
Query: 228 VTQAGVQWHDLGSLQPLPPGFR 249
V QAGVQW DLGSLQP PPGF+
Sbjct: 32 VPQAGVQWRDLGSLQPPPPGFK 53
>gi|193794843 BEN domain containing 2 [Homo sapiens]
Length = 799
Score = 42.0 bits (97), Expect = 5e-04
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 173 IDSLSLNREFGYQKLDVKSIDDEDVDENEDD--------------VYGNSSGRKHRGHSE 218
+D N + + ++V D ++ DD N G H
Sbjct: 15 VDDSDDNNDCSIEMVEVSETADNSTNDIADDSTYVTADNPTDDTATQPNFPGGNDGHHRP 74
Query: 219 SPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
G+ SVTQAGVQWHD SLQP P G +
Sbjct: 75 LQMSYGSGSVTQAGVQWHDHSSLQPQPLGLK 105
>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/23 (86%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Query: 227 SVTQAGVQW-HDLGSLQPLPPGF 248
SVTQAGVQW DLGSLQP PPGF
Sbjct: 131 SVTQAGVQWCDDLGSLQPPPPGF 153
>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/23 (86%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Query: 227 SVTQAGVQW-HDLGSLQPLPPGF 248
SVTQAGVQW DLGSLQP PPGF
Sbjct: 131 SVTQAGVQWCDDLGSLQPPPPGF 153
>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 40.8 bits (94), Expect = 0.001
Identities = 20/23 (86%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Query: 227 SVTQAGVQW-HDLGSLQPLPPGF 248
SVTQAGVQW DLGSLQP PPGF
Sbjct: 131 SVTQAGVQWCDDLGSLQPPPPGF 153
>gi|149588643 zinc finger protein 283 [Homo sapiens]
Length = 679
Score = 40.0 bits (92), Expect = 0.002
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 225 AHSVTQAGVQWHDLGSLQPLPPGF 248
+ SV QAGVQW DLGSLQ PPGF
Sbjct: 3 SRSVAQAGVQWCDLGSLQAPPPGF 26
>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
sapiens]
Length = 714
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 220 PEKNGAHSVTQAGVQWHDLGSLQPLPPG 247
P G+ S TQAGVQW + GSLQP PPG
Sbjct: 462 PILEGSRSYTQAGVQWCNHGSLQPRPPG 489
>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
sapiens]
Length = 741
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 220 PEKNGAHSVTQAGVQWHDLGSLQPLPPG 247
P G+ S TQAGVQW + GSLQP PPG
Sbjct: 462 PILEGSRSYTQAGVQWCNHGSLQPRPPG 489
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 38.5 bits (88), Expect = 0.006
Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 8/207 (3%)
Query: 26 DNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQGVSSVFREITASSAISILIKPEQETD 85
D+ D + K SD + N + +S+ SS + S + ++D
Sbjct: 535 DDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSD 594
Query: 86 PLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDH 145
+ + S+D+ + ++ S D + E +S D K+ + +S D+SD+
Sbjct: 595 SSDSSNSSDSSDSSDSSDSSDSSDSSDSKS-DSSKSESDSSDSDSKSDSSDSNSSDSSDN 653
Query: 146 S-------SVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVD 198
S S N + +S +S+ S S++ S S + + D D D
Sbjct: 654 SDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSS 713
Query: 199 ENEDDVYGNSSGRKHRGHSESPEKNGA 225
++ D NSS S+S + + +
Sbjct: 714 DSSDSSNSNSSDSDSSNSSDSSDSSNS 740
Score = 37.7 bits (86), Expect = 0.009
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 3/136 (2%)
Query: 95 SADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIM--- 151
S+D+ + +N D D NS + + + S D+SD S+ N
Sbjct: 668 SSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSD 727
Query: 152 SAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGR 211
S+ S +SN S SS+S + S + + S D D ++ D + S
Sbjct: 728 SSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSND 787
Query: 212 KHRGHSESPEKNGAHS 227
S N + S
Sbjct: 788 SSNSSDSSDSSNSSDS 803
Score = 34.7 bits (78), Expect = 0.080
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 4/131 (3%)
Query: 95 SADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAF 154
S D+ + ++ + D D +S D +S D+SD S+ S+
Sbjct: 785 SNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSN----SSD 840
Query: 155 ESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHR 214
S +S+GS S +S + DS + + S + D NE +SS +
Sbjct: 841 SSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNS 900
Query: 215 GHSESPEKNGA 225
S+S + + +
Sbjct: 901 SDSDSSDSSNS 911
Score = 34.7 bits (78), Expect = 0.080
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 118 DEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSW-KIDSL 176
D D NS D + + + S+ +S +SS + S+ S +SN S SSNS DS
Sbjct: 913 DSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSN 972
Query: 177 SLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHS 227
S + D S D D ++ D ++S S N + S
Sbjct: 973 SSDSSDSSNSSD--SSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDS 1021
Score = 32.7 bits (73), Expect = 0.30
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 95 SADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAF 154
S+D+ + +N D D NS D + + S NS S+ + S+
Sbjct: 734 SSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSD 793
Query: 155 ESPFGPNSNGSQSSNSW-------KIDSLSLNREFGYQKLDVK-SIDDEDVDENEDDVYG 206
S +SN S SSNS DS S N D S + D ++ D G
Sbjct: 794 SSD---SSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDG 850
Query: 207 NSSGRKHRGHSES 219
+ S +R S +
Sbjct: 851 SDSDSSNRSDSSN 863
Score = 31.6 bits (70), Expect = 0.67
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 2/125 (1%)
Query: 103 ERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNS 162
+ + +N D D NS D + + ESS + S N + S +S
Sbjct: 854 DSSNRSDSSNSSDSSDSSDSSNSSDS-SDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSS 912
Query: 163 NGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK 222
+ S SSNS S S N D + D + + +S+ S+S +
Sbjct: 913 DSSDSSNS-SDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDS 971
Query: 223 NGAHS 227
N + S
Sbjct: 972 NSSDS 976
Score = 31.6 bits (70), Expect = 0.67
Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 6/224 (2%)
Query: 2 DEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQGV 61
D SS + NS + + D+ + + S + + + +S+ + S
Sbjct: 860 DSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSN 919
Query: 62 SSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFD--DE 119
SS E + SS S +D + S+D+ + ++ S D D
Sbjct: 920 SSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDS 979
Query: 120 EDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN 179
+ +S D + + S NS SS + S+ S +SN S SSNS S S +
Sbjct: 980 SNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNS----SDSSD 1035
Query: 180 REFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKN 223
D D N D +S S+S + +
Sbjct: 1036 SSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSS 1079
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 21/111 (18%)
Query: 118 DEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLS 177
DE++++ SGD + G G+ S +NS +G + + I S
Sbjct: 252 DEDEDEGSGDDEDEEAGNGKDSSNNSKGQE------------GQDHGKEDDHDSSIGQNS 299
Query: 178 LNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHSV 228
++E+ D E ++ ++V G+ + + + PE NG+ +
Sbjct: 300 DSKEY---------YDPEGKEDPHNEVDGDKTSKSEENSAGIPEDNGSQRI 341
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 118 DEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLS 177
D N+G+ +G+ D+SD S +SN S SS+S DS
Sbjct: 525 DSNGNGNNGNDDNDKSDSGKGKSDSSDSDS-----------SDSSNSSDSSDSSDSDSSD 573
Query: 178 LNREFGYQKLDVKSIDDEDVDENEDDVYGNSS 209
N D S D D D ++ +SS
Sbjct: 574 SNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSS 605
Score = 29.3 bits (64), Expect = 3.3
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 118 DEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLS 177
D +D+ GD P + + S N D +S ES +S G S NS +
Sbjct: 454 DFDDKSMQGD----DPNSSDESNGNDDANS-------ESDNNSSSRGDASYNSDE----- 497
Query: 178 LNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKN 223
+++ G D K +D+D D D +S+G + G+ ++ + +
Sbjct: 498 -SKDNGNGS-DSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDNDKSD 541
Score = 28.5 bits (62), Expect = 5.7
Identities = 34/122 (27%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query: 118 DEEDEQNSGDMFKKTPGAGES-SEDNSDHS-SVNIMSAFESPFGPNSNGSQSSNSWK--- 172
D D NS D + + S S D+SD S S + S+ S +S+ S SSNS
Sbjct: 784 DSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSD 843
Query: 173 -------IDSLSLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGA 225
DS S NR D S D D + D + S S N +
Sbjct: 844 SSDSSDGSDSDSSNRSDSSNSSD--SSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSS 901
Query: 226 HS 227
S
Sbjct: 902 DS 903
>gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4
precursor [Homo sapiens]
Length = 171
Score = 38.5 bits (88), Expect = 0.006
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 225 AHSVTQAGVQWHDLGSLQPLPP 246
+HSVTQ +QWHD GSLQP PP
Sbjct: 147 SHSVTQDWLQWHDHGSLQPPPP 168
>gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4
precursor [Homo sapiens]
Length = 171
Score = 38.5 bits (88), Expect = 0.006
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 225 AHSVTQAGVQWHDLGSLQPLPP 246
+HSVTQ +QWHD GSLQP PP
Sbjct: 147 SHSVTQDWLQWHDHGSLQPPPP 168
>gi|40789270 zinc finger protein 573 [Homo sapiens]
Length = 607
Score = 38.5 bits (88), Expect = 0.006
Identities = 17/23 (73%), Positives = 18/23 (78%)
Query: 227 SVTQAGVQWHDLGSLQPLPPGFR 249
SV QAGVQW DL SLQP PP F+
Sbjct: 5 SVAQAGVQWPDLSSLQPPPPRFK 27
>gi|169217402 PREDICTED: similar to CYorf16 protein [Homo sapiens]
Length = 217
Score = 37.7 bits (86), Expect = 0.009
Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 215 GHSESPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
G PEK +HSVTQAGV+ DLGS QP P F+
Sbjct: 184 GSGRIPEKE-SHSVTQAGVKCQDLGSPQPPPATFK 217
>gi|169217327 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 37.7 bits (86), Expect = 0.009
Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 215 GHSESPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
G PEK +HSVTQAGV+ DLGS QP P F+
Sbjct: 184 GSGRIPEKE-SHSVTQAGVKCQDLGSPQPPPATFK 217
>gi|148612849 kinesin heavy chain member 2 isoform 2 [Homo sapiens]
Length = 744
Score = 37.7 bits (86), Expect = 0.009
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 19 ILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQGVSSVFREITASSAISIL- 77
I I ++ K +G+ A S L E ++VT+ E + + +EI S S+
Sbjct: 9 IQIGIYVEIKRSDGRIHQAMVTS--LNEDNESVTV--EWIENGDTKGKEIDLESIFSLNP 64
Query: 78 -IKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKT---P 133
+ P++E +P P ++ AK K K ++ V +I + D + G + P
Sbjct: 65 DLVPDEEIEPSPETPPPPASSAKVNKIVKNRRTVASIKNDPPSRDNRVVGSARARPSQFP 124
Query: 134 GAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWK-IDSLSLNRE---FGYQKLDV 189
S++ N S ++ + A + FGP S + SN K ++ L RE Q+L
Sbjct: 125 EQSSSAQQNGSVSDISPVQAAKKEFGPPSR--RKSNCVKEVEKLQEKREKRRLQQQELRE 182
Query: 190 KSIDDED 196
K D D
Sbjct: 183 KRAQDVD 189
>gi|148612877 kinesin heavy chain member 2 isoform 1 [Homo sapiens]
Length = 706
Score = 37.7 bits (86), Expect = 0.009
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 19 ILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQGVSSVFREITASSAISIL- 77
I I ++ K +G+ A S L E ++VT+ E + + +EI S S+
Sbjct: 9 IQIGIYVEIKRSDGRIHQAMVTS--LNEDNESVTV--EWIENGDTKGKEIDLESIFSLNP 64
Query: 78 -IKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKT---P 133
+ P++E +P P ++ AK K K ++ V +I + D + G + P
Sbjct: 65 DLVPDEEIEPSPETPPPPASSAKVNKIVKNRRTVASIKNDPPSRDNRVVGSARARPSQFP 124
Query: 134 GAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWK-IDSLSLNRE---FGYQKLDV 189
S++ N S ++ + A + FGP S + SN K ++ L RE Q+L
Sbjct: 125 EQSSSAQQNGSVSDISPVQAAKKEFGPPSR--RKSNCVKEVEKLQEKREKRRLQQQELRE 182
Query: 190 KSIDDED 196
K D D
Sbjct: 183 KRAQDVD 189
>gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens]
Length = 462
Score = 37.4 bits (85), Expect = 0.012
Identities = 16/19 (84%), Positives = 16/19 (84%)
Query: 228 VTQAGVQWHDLGSLQPLPP 246
V QAGVQW DLGSLQP PP
Sbjct: 424 VAQAGVQWSDLGSLQPPPP 442
>gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo
sapiens]
Length = 196
Score = 37.4 bits (85), Expect = 0.012
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 221 EKNGAHSVTQAGVQWHDLGSLQP 243
+K +HSVTQ VQWHD GSLQP
Sbjct: 112 QKTRSHSVTQNEVQWHDHGSLQP 134
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 36.6 bits (83), Expect = 0.021
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 37/213 (17%)
Query: 41 SDLLKESTQNVTLLKESTQGVSSVFREITASSAISILIKPEQETDPLPVVSRNVSA---- 96
S+L+ E + LK + G R +TA+ + E E DP ++++
Sbjct: 168 SELIAEMRNSGFALKRNVLG-----RNLTANDPSQEYVASEGEEDPEVEFLKSLTTKQKQ 222
Query: 97 ---------DAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSS 147
+ K KK+ +KKK+ S + +S + + E+SE +S+ S
Sbjct: 223 KLLRKLDRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESES 282
Query: 148 VNIMSAFESP-------FGPNSNGSQSSNSWK-------IDSLSLNREFGYQKLDVKSID 193
N + G N++ S+ + K + S NRE +K + +
Sbjct: 283 NNKEKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEK--PRFLK 340
Query: 194 DEDVDENEDDVYGNS-SGRKHRGHSESPEKNGA 225
E ED + +S S +K R H SPEK G+
Sbjct: 341 HE--SSREDSKWSHSDSDKKSRTHKHSPEKRGS 371
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 36.2 bits (82), Expect = 0.027
Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 30/177 (16%)
Query: 79 KPEQETDPLPVVSRNVSADAKCKKERKKKKQV-----------TNIISFDDEEDEQNSGD 127
K E E ++S N S+ K ++++K+KK+ ++ S D E++E+ G
Sbjct: 70 KKELEKSREKLLSGNESSSKKRERKKKRKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGK 129
Query: 128 MFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKL 187
KK S +S H S + + ES + ++ + SLS R+ Y
Sbjct: 130 RRKKKKNRSYKSSQSSTHESES--ESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187
Query: 188 DVKSIDDEDVDENEDDVYGNSSGR-----------------KHRGHSESPEKNGAHS 227
S + + E+DV R +H+ HS+ +K S
Sbjct: 188 KPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKKKSGSS 244
>gi|16445033 ACRC protein [Homo sapiens]
Length = 691
Score = 35.4 bits (80), Expect = 0.047
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 10/162 (6%)
Query: 69 TASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDM 128
T+ S+++ Q + L V SR+ R K+Q ++++ D + DE+
Sbjct: 32 TSGSSVARRAPKRQASCILNVQSRSGDTSGSSVARRAPKRQASSVVVIDSDSDEECHTHE 91
Query: 129 FKKTPGAGESSEDNSDHSSVNIMSAFESP---FGPNSNGSQSSNSWKIDSLSLNREFGYQ 185
KK +S+D S ++ A + P + N + N ++ + +
Sbjct: 92 EKKAKLLEINSDDESP-ECCHVKPAIQEPPIVISDDDNDDDNGNDLEVPD---DNSDDSE 147
Query: 186 KLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHS 227
D S D E D+N DD + + + SE+P+ N S
Sbjct: 148 APDDNSDDSEAPDDNSDD---SEAPDDNSDDSEAPDDNSDDS 186
Score = 33.1 bits (74), Expect = 0.23
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 1/124 (0%)
Query: 80 PEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESS 139
P+ +D N S D++ + + + S D E + NS D + +SS
Sbjct: 139 PDDNSDDSEAPDDN-SDDSEAPDDNSDDSEAPDDNSDDSEAPDDNSDDSDVPDDNSDDSS 197
Query: 140 EDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDE 199
+DNSD SS + + P + + +S + + + D S D E D+
Sbjct: 198 DDNSDDSSDDNSDDSDVPDDKSDDSDVPDDSSDDSDVPDDSSDDSEAPDDSSDDSEAPDD 257
Query: 200 NEDD 203
+ DD
Sbjct: 258 SSDD 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.125 0.344
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,213,185
Number of Sequences: 37866
Number of extensions: 463847
Number of successful extensions: 1753
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 1545
Number of HSP's gapped (non-prelim): 243
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.