Guide to the Human Genome
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Search of human proteins with 59933284

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|59933284 RUN domain containing 2B [Homo sapiens]
         (249 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|59933284 RUN domain containing 2B [Homo sapiens]                   497   e-141
gi|116292170 RUN domain containing 2A [Homo sapiens]                  420   e-118
gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo sa...    48   7e-06
gi|239757977 PREDICTED: similar to CYorf16 protein [Homo sapiens]      47   2e-05
gi|239752473 PREDICTED: hypothetical protein XP_002348288 [Homo ...    47   2e-05
gi|239747029 PREDICTED: hypothetical protein XP_002343910 [Homo ...    47   2e-05
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi...    47   2e-05
gi|238908517 colony stimulating factor 2 receptor alpha chain is...    45   6e-05
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [...    45   8e-05
gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...    43   3e-04
gi|193794843 BEN domain containing 2 [Homo sapiens]                    42   5e-04
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ...    41   0.001
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ...    41   0.001
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ...    41   0.001
gi|149588643 zinc finger protein 283 [Homo sapiens]                    40   0.002
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s...    40   0.002
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s...    40   0.002
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]    39   0.006
gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4 pr...    39   0.006
gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4 p...    39   0.006
gi|40789270 zinc finger protein 573 [Homo sapiens]                     39   0.006
gi|169217402 PREDICTED: similar to CYorf16 protein [Homo sapiens]      38   0.009
gi|169217327 PREDICTED: hypothetical protein [Homo sapiens]            38   0.009
gi|148612849 kinesin heavy chain member 2 isoform 2 [Homo sapiens]     38   0.009
gi|148612877 kinesin heavy chain member 2 isoform 1 [Homo sapiens]     38   0.009
gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens]             37   0.012
gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo sapi...    37   0.012
gi|40068059 CBF1 interacting corepressor [Homo sapiens]                37   0.021
gi|27734775 hypothetical protein LOC286499 [Homo sapiens]              36   0.027
gi|16445033 ACRC protein [Homo sapiens]                                35   0.047

>gi|59933284 RUN domain containing 2B [Homo sapiens]
          Length = 249

 Score =  497 bits (1279), Expect = e-141
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQG 60
           MDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQG
Sbjct: 1   MDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQG 60

Query: 61  VSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEE 120
           VSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEE
Sbjct: 61  VSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEE 120

Query: 121 DEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNR 180
           DEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNR
Sbjct: 121 DEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNR 180

Query: 181 EFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHSVTQAGVQWHDLGS 240
           EFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHSVTQAGVQWHDLGS
Sbjct: 181 EFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHSVTQAGVQWHDLGS 240

Query: 241 LQPLPPGFR 249
           LQPLPPGFR
Sbjct: 241 LQPLPPGFR 249


>gi|116292170 RUN domain containing 2A [Homo sapiens]
          Length = 375

 Score =  420 bits (1079), Expect = e-118
 Identities = 215/223 (96%), Positives = 219/223 (98%), Gaps = 1/223 (0%)

Query: 1   MDEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVT-LLKESTQ 59
           MDEERSSMLPTMAAG NSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVT LLKESTQ
Sbjct: 153 MDEERSSMLPTMAAGLNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTSLLKESTQ 212

Query: 60  GVSSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDE 119
           GVSS+FREITASSA+SILIKPEQETDPLPVVSRNVSADAKCKKERKKKK+VTNIISFDDE
Sbjct: 213 GVSSLFREITASSAVSILIKPEQETDPLPVVSRNVSADAKCKKERKKKKKVTNIISFDDE 272

Query: 120 EDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN 179
           EDEQNSGD+FKKTPGAGESSEDNSD SSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN
Sbjct: 273 EDEQNSGDVFKKTPGAGESSEDNSDRSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN 332

Query: 180 REFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK 222
            EFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK
Sbjct: 333 GEFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK 375


>gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo
           sapiens]
          Length = 322

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 21/31 (67%), Positives = 25/31 (80%)

Query: 219 SPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
           S +   +HSVTQAGVQWH+LGSLQPLP G +
Sbjct: 261 SKKAKWSHSVTQAGVQWHNLGSLQPLPLGLK 291


>gi|239757977 PREDICTED: similar to CYorf16 protein [Homo sapiens]
          Length = 140

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 225 AHSVTQAGVQWHDLGSLQPLPPGFR 249
           +H VTQAGV+WHDLGSLQ LPP F+
Sbjct: 109 SHYVTQAGVKWHDLGSLQTLPPSFK 133


>gi|239752473 PREDICTED: hypothetical protein XP_002348288 [Homo
           sapiens]
          Length = 140

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 225 AHSVTQAGVQWHDLGSLQPLPPGFR 249
           +H VTQAGV+WHDLGSLQ LPP F+
Sbjct: 109 SHYVTQAGVKWHDLGSLQTLPPSFK 133


>gi|239747029 PREDICTED: hypothetical protein XP_002343910 [Homo
           sapiens]
          Length = 228

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 225 AHSVTQAGVQWHDLGSLQPLPPGFR 249
           +H VTQAGV+WHDLGSLQ LPP F+
Sbjct: 197 SHYVTQAGVKWHDLGSLQTLPPSFK 221


>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
           sapiens]
          Length = 440

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 209 SGRKHRGHSESPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
           S R  R   + P+   + SV QAGVQW +LGSLQPLPPGF+
Sbjct: 345 SRRVKRREKQFPD---SRSVAQAGVQWRNLGSLQPLPPGFK 382


>gi|238908517 colony stimulating factor 2 receptor alpha chain
           isoform f precursor [Homo sapiens]
          Length = 434

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 19/23 (82%), Positives = 21/23 (91%)

Query: 224 GAHSVTQAGVQWHDLGSLQPLPP 246
           G+HSVTQAGVQWH+LGSLQP  P
Sbjct: 316 GSHSVTQAGVQWHNLGSLQPPSP 338


>gi|121583542 mitogen-activated protein kinase kinase kinase 15
           [Homo sapiens]
          Length = 788

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 18/24 (75%), Positives = 20/24 (83%)

Query: 226 HSVTQAGVQWHDLGSLQPLPPGFR 249
           H   +AGVQWHDLGSLQPLPP F+
Sbjct: 21  HKGNKAGVQWHDLGSLQPLPPRFK 44


>gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo
           sapiens]
          Length = 165

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 18/22 (81%), Positives = 19/22 (86%)

Query: 228 VTQAGVQWHDLGSLQPLPPGFR 249
           V QAGVQW DLGSLQP PPGF+
Sbjct: 32  VPQAGVQWRDLGSLQPPPPGFK 53


>gi|193794843 BEN domain containing 2 [Homo sapiens]
          Length = 799

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 14/91 (15%)

Query: 173 IDSLSLNREFGYQKLDVKSIDDEDVDENEDD--------------VYGNSSGRKHRGHSE 218
           +D    N +   + ++V    D   ++  DD                 N  G     H  
Sbjct: 15  VDDSDDNNDCSIEMVEVSETADNSTNDIADDSTYVTADNPTDDTATQPNFPGGNDGHHRP 74

Query: 219 SPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
                G+ SVTQAGVQWHD  SLQP P G +
Sbjct: 75  LQMSYGSGSVTQAGVQWHDHSSLQPQPLGLK 105


>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/23 (86%), Positives = 20/23 (86%), Gaps = 1/23 (4%)

Query: 227 SVTQAGVQW-HDLGSLQPLPPGF 248
           SVTQAGVQW  DLGSLQP PPGF
Sbjct: 131 SVTQAGVQWCDDLGSLQPPPPGF 153


>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/23 (86%), Positives = 20/23 (86%), Gaps = 1/23 (4%)

Query: 227 SVTQAGVQW-HDLGSLQPLPPGF 248
           SVTQAGVQW  DLGSLQP PPGF
Sbjct: 131 SVTQAGVQWCDDLGSLQPPPPGF 153


>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
           sapiens]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 20/23 (86%), Positives = 20/23 (86%), Gaps = 1/23 (4%)

Query: 227 SVTQAGVQW-HDLGSLQPLPPGF 248
           SVTQAGVQW  DLGSLQP PPGF
Sbjct: 131 SVTQAGVQWCDDLGSLQPPPPGF 153


>gi|149588643 zinc finger protein 283 [Homo sapiens]
          Length = 679

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 18/24 (75%), Positives = 19/24 (79%)

Query: 225 AHSVTQAGVQWHDLGSLQPLPPGF 248
           + SV QAGVQW DLGSLQ  PPGF
Sbjct: 3   SRSVAQAGVQWCDLGSLQAPPPGF 26


>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
           sapiens]
          Length = 714

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/28 (64%), Positives = 20/28 (71%)

Query: 220 PEKNGAHSVTQAGVQWHDLGSLQPLPPG 247
           P   G+ S TQAGVQW + GSLQP PPG
Sbjct: 462 PILEGSRSYTQAGVQWCNHGSLQPRPPG 489


>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
           sapiens]
          Length = 741

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/28 (64%), Positives = 20/28 (71%)

Query: 220 PEKNGAHSVTQAGVQWHDLGSLQPLPPG 247
           P   G+ S TQAGVQW + GSLQP PPG
Sbjct: 462 PILEGSRSYTQAGVQWCNHGSLQPRPPG 489


>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
          Length = 1301

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 8/207 (3%)

Query: 26  DNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQGVSSVFREITASSAISILIKPEQETD 85
           D+ D +   K     SD     + N +   +S+   SS     + S +         ++D
Sbjct: 535 DDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSD 594

Query: 86  PLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDH 145
                + + S+D+    +       ++  S D  + E +S D   K+  +  +S D+SD+
Sbjct: 595 SSDSSNSSDSSDSSDSSDSSDSSDSSDSKS-DSSKSESDSSDSDSKSDSSDSNSSDSSDN 653

Query: 146 S-------SVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVD 198
           S       S N   + +S    +S+ S  S++    S S +     +  D     D D  
Sbjct: 654 SDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSS 713

Query: 199 ENEDDVYGNSSGRKHRGHSESPEKNGA 225
           ++ D    NSS       S+S + + +
Sbjct: 714 DSSDSSNSNSSDSDSSNSSDSSDSSNS 740



 Score = 37.7 bits (86), Expect = 0.009
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 3/136 (2%)

Query: 95  SADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIM--- 151
           S+D+    +       +N     D  D  NS +    +  +   S D+SD S+ N     
Sbjct: 668 SSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSD 727

Query: 152 SAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGR 211
           S+  S    +SN S SS+S    + S + +         S D  D  ++ D    + S  
Sbjct: 728 SSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSND 787

Query: 212 KHRGHSESPEKNGAHS 227
                  S   N + S
Sbjct: 788 SSNSSDSSDSSNSSDS 803



 Score = 34.7 bits (78), Expect = 0.080
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 95  SADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAF 154
           S D+    +       ++  +  D  D  +S D          +S D+SD S+    S+ 
Sbjct: 785 SNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSN----SSD 840

Query: 155 ESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHR 214
            S    +S+GS S +S + DS + +           S   +  D NE     +SS   + 
Sbjct: 841 SSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNS 900

Query: 215 GHSESPEKNGA 225
             S+S + + +
Sbjct: 901 SDSDSSDSSNS 911



 Score = 34.7 bits (78), Expect = 0.080
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 3/111 (2%)

Query: 118  DEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSW-KIDSL 176
            D  D  NS D  + +  +  S+  +S +SS +  S+  S    +SN S SSNS    DS 
Sbjct: 913  DSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSN 972

Query: 177  SLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHS 227
            S +        D  S D  D  ++ D    ++S         S   N + S
Sbjct: 973  SSDSSDSSNSSD--SSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDS 1021



 Score = 32.7 bits (73), Expect = 0.30
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 95  SADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAF 154
           S+D+    +       +N     D  D  NS D    +  +  S   NS  S+ +  S+ 
Sbjct: 734 SSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSD 793

Query: 155 ESPFGPNSNGSQSSNSW-------KIDSLSLNREFGYQKLDVK-SIDDEDVDENEDDVYG 206
            S    +SN S SSNS          DS S N        D   S +  D  ++ D   G
Sbjct: 794 SSD---SSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDG 850

Query: 207 NSSGRKHRGHSES 219
           + S   +R  S +
Sbjct: 851 SDSDSSNRSDSSN 863



 Score = 31.6 bits (70), Expect = 0.67
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 103 ERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNS 162
           +   +   +N     D  D  NS D    +  + ESS  +    S N   +  S    +S
Sbjct: 854 DSSNRSDSSNSSDSSDSSDSSNSSDS-SDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSS 912

Query: 163 NGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEK 222
           + S SSNS    S S N        D  +  D     +  +   +S+       S+S + 
Sbjct: 913 DSSDSSNS-SDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDS 971

Query: 223 NGAHS 227
           N + S
Sbjct: 972 NSSDS 976



 Score = 31.6 bits (70), Expect = 0.67
 Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 6/224 (2%)

Query: 2    DEERSSMLPTMAAGPNSILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQGV 61
            D   SS     +   NS   + + D+ + +  S  + + +    +S+ +      S    
Sbjct: 860  DSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSN 919

Query: 62   SSVFREITASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFD--DE 119
            SS   E + SS  S        +D       + S+D+    +       ++  S D  D 
Sbjct: 920  SSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDS 979

Query: 120  EDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLN 179
             +  +S D    +  +  S   NS  SS +  S+  S    +SN S SSNS    S S +
Sbjct: 980  SNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNS----SDSSD 1035

Query: 180  REFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKN 223
                    D     D     N  D   +S        S+S + +
Sbjct: 1036 SSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSS 1079



 Score = 30.4 bits (67), Expect = 1.5
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 21/111 (18%)

Query: 118 DEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLS 177
           DE++++ SGD   +  G G+ S +NS                   +G +  +   I   S
Sbjct: 252 DEDEDEGSGDDEDEEAGNGKDSSNNSKGQE------------GQDHGKEDDHDSSIGQNS 299

Query: 178 LNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHSV 228
            ++E+          D E  ++  ++V G+ + +     +  PE NG+  +
Sbjct: 300 DSKEY---------YDPEGKEDPHNEVDGDKTSKSEENSAGIPEDNGSQRI 341



 Score = 30.0 bits (66), Expect = 2.0
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 118 DEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLS 177
           D     N+G+       +G+   D+SD  S             +SN S SS+S   DS  
Sbjct: 525 DSNGNGNNGNDDNDKSDSGKGKSDSSDSDS-----------SDSSNSSDSSDSSDSDSSD 573

Query: 178 LNREFGYQKLDVKSIDDEDVDENEDDVYGNSS 209
            N        D  S D  D D ++     +SS
Sbjct: 574 SNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSS 605



 Score = 29.3 bits (64), Expect = 3.3
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 18/106 (16%)

Query: 118 DEEDEQNSGDMFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLS 177
           D +D+   GD     P + + S  N D +S       ES    +S G  S NS +     
Sbjct: 454 DFDDKSMQGD----DPNSSDESNGNDDANS-------ESDNNSSSRGDASYNSDE----- 497

Query: 178 LNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKN 223
            +++ G    D K  +D+D D   D    +S+G  + G+ ++ + +
Sbjct: 498 -SKDNGNGS-DSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDNDKSD 541



 Score = 28.5 bits (62), Expect = 5.7
 Identities = 34/122 (27%), Positives = 44/122 (36%), Gaps = 14/122 (11%)

Query: 118 DEEDEQNSGDMFKKTPGAGES-SEDNSDHS-SVNIMSAFESPFGPNSNGSQSSNSWK--- 172
           D  D  NS D    +  +  S S D+SD S S +  S+  S    +S+ S SSNS     
Sbjct: 784 DSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSD 843

Query: 173 -------IDSLSLNREFGYQKLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGA 225
                   DS S NR       D  S D  D   + D    + S         S   N +
Sbjct: 844 SSDSSDGSDSDSSNRSDSSNSSD--SSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSS 901

Query: 226 HS 227
            S
Sbjct: 902 DS 903


>gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4
           precursor [Homo sapiens]
          Length = 171

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query: 225 AHSVTQAGVQWHDLGSLQPLPP 246
           +HSVTQ  +QWHD GSLQP PP
Sbjct: 147 SHSVTQDWLQWHDHGSLQPPPP 168


>gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4
           precursor [Homo sapiens]
          Length = 171

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query: 225 AHSVTQAGVQWHDLGSLQPLPP 246
           +HSVTQ  +QWHD GSLQP PP
Sbjct: 147 SHSVTQDWLQWHDHGSLQPPPP 168


>gi|40789270 zinc finger protein 573 [Homo sapiens]
          Length = 607

 Score = 38.5 bits (88), Expect = 0.006
 Identities = 17/23 (73%), Positives = 18/23 (78%)

Query: 227 SVTQAGVQWHDLGSLQPLPPGFR 249
           SV QAGVQW DL SLQP PP F+
Sbjct: 5   SVAQAGVQWPDLSSLQPPPPRFK 27


>gi|169217402 PREDICTED: similar to CYorf16 protein [Homo sapiens]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 215 GHSESPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
           G    PEK  +HSVTQAGV+  DLGS QP P  F+
Sbjct: 184 GSGRIPEKE-SHSVTQAGVKCQDLGSPQPPPATFK 217


>gi|169217327 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 217

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 20/35 (57%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 215 GHSESPEKNGAHSVTQAGVQWHDLGSLQPLPPGFR 249
           G    PEK  +HSVTQAGV+  DLGS QP P  F+
Sbjct: 184 GSGRIPEKE-SHSVTQAGVKCQDLGSPQPPPATFK 217


>gi|148612849 kinesin heavy chain member 2 isoform 2 [Homo sapiens]
          Length = 744

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 15/187 (8%)

Query: 19  ILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQGVSSVFREITASSAISIL- 77
           I   I ++ K  +G+   A   S  L E  ++VT+  E  +   +  +EI   S  S+  
Sbjct: 9   IQIGIYVEIKRSDGRIHQAMVTS--LNEDNESVTV--EWIENGDTKGKEIDLESIFSLNP 64

Query: 78  -IKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKT---P 133
            + P++E +P P      ++ AK  K  K ++ V +I +     D +  G    +    P
Sbjct: 65  DLVPDEEIEPSPETPPPPASSAKVNKIVKNRRTVASIKNDPPSRDNRVVGSARARPSQFP 124

Query: 134 GAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWK-IDSLSLNRE---FGYQKLDV 189
               S++ N   S ++ + A +  FGP S   + SN  K ++ L   RE      Q+L  
Sbjct: 125 EQSSSAQQNGSVSDISPVQAAKKEFGPPSR--RKSNCVKEVEKLQEKREKRRLQQQELRE 182

Query: 190 KSIDDED 196
           K   D D
Sbjct: 183 KRAQDVD 189


>gi|148612877 kinesin heavy chain member 2 isoform 1 [Homo sapiens]
          Length = 706

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 15/187 (8%)

Query: 19  ILFAINIDNKDLNGQSKFAPTVSDLLKESTQNVTLLKESTQGVSSVFREITASSAISIL- 77
           I   I ++ K  +G+   A   S  L E  ++VT+  E  +   +  +EI   S  S+  
Sbjct: 9   IQIGIYVEIKRSDGRIHQAMVTS--LNEDNESVTV--EWIENGDTKGKEIDLESIFSLNP 64

Query: 78  -IKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKT---P 133
            + P++E +P P      ++ AK  K  K ++ V +I +     D +  G    +    P
Sbjct: 65  DLVPDEEIEPSPETPPPPASSAKVNKIVKNRRTVASIKNDPPSRDNRVVGSARARPSQFP 124

Query: 134 GAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWK-IDSLSLNRE---FGYQKLDV 189
               S++ N   S ++ + A +  FGP S   + SN  K ++ L   RE      Q+L  
Sbjct: 125 EQSSSAQQNGSVSDISPVQAAKKEFGPPSR--RKSNCVKEVEKLQEKREKRRLQQQELRE 182

Query: 190 KSIDDED 196
           K   D D
Sbjct: 183 KRAQDVD 189


>gi|150378454 sarcoglycan, epsilon isoform 1 [Homo sapiens]
          Length = 462

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 16/19 (84%), Positives = 16/19 (84%)

Query: 228 VTQAGVQWHDLGSLQPLPP 246
           V QAGVQW DLGSLQP PP
Sbjct: 424 VAQAGVQWSDLGSLQPPPP 442


>gi|154240722 hypothetical protein LOC399949 isoform 1 [Homo
           sapiens]
          Length = 196

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 16/23 (69%), Positives = 18/23 (78%)

Query: 221 EKNGAHSVTQAGVQWHDLGSLQP 243
           +K  +HSVTQ  VQWHD GSLQP
Sbjct: 112 QKTRSHSVTQNEVQWHDHGSLQP 134


>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
          Length = 450

 Score = 36.6 bits (83), Expect = 0.021
 Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 37/213 (17%)

Query: 41  SDLLKESTQNVTLLKESTQGVSSVFREITASSAISILIKPEQETDPLPVVSRNVSA---- 96
           S+L+ E   +   LK +  G     R +TA+      +  E E DP     ++++     
Sbjct: 168 SELIAEMRNSGFALKRNVLG-----RNLTANDPSQEYVASEGEEDPEVEFLKSLTTKQKQ 222

Query: 97  ---------DAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSS 147
                    + K KK+ +KKK+     S   +    +S      +  + E+SE +S+  S
Sbjct: 223 KLLRKLDRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESES 282

Query: 148 VNIMSAFESP-------FGPNSNGSQSSNSWK-------IDSLSLNREFGYQKLDVKSID 193
            N     +          G N++ S+  +  K       + S   NRE   +K   + + 
Sbjct: 283 NNKEKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEK--PRFLK 340

Query: 194 DEDVDENEDDVYGNS-SGRKHRGHSESPEKNGA 225
            E     ED  + +S S +K R H  SPEK G+
Sbjct: 341 HE--SSREDSKWSHSDSDKKSRTHKHSPEKRGS 371


>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
          Length = 248

 Score = 36.2 bits (82), Expect = 0.027
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 30/177 (16%)

Query: 79  KPEQETDPLPVVSRNVSADAKCKKERKKKKQV-----------TNIISFDDEEDEQNSGD 127
           K E E     ++S N S+  K ++++K+KK+            ++  S D E++E+  G 
Sbjct: 70  KKELEKSREKLLSGNESSSKKRERKKKRKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGK 129

Query: 128 MFKKTPGAGESSEDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKL 187
             KK       S  +S H S +   + ES      +  ++     + SLS  R+  Y   
Sbjct: 130 RRKKKKNRSYKSSQSSTHESES--ESKESVKKKKKSKDETEKEKDVRSLSKKRKKSYPDD 187

Query: 188 DVKSIDDEDVDENEDDVYGNSSGR-----------------KHRGHSESPEKNGAHS 227
              S +     + E+DV      R                 +H+ HS+  +K    S
Sbjct: 188 KPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKKKSGSS 244


>gi|16445033 ACRC protein [Homo sapiens]
          Length = 691

 Score = 35.4 bits (80), Expect = 0.047
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 10/162 (6%)

Query: 69  TASSAISILIKPEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDM 128
           T+ S+++      Q +  L V SR+          R  K+Q ++++  D + DE+     
Sbjct: 32  TSGSSVARRAPKRQASCILNVQSRSGDTSGSSVARRAPKRQASSVVVIDSDSDEECHTHE 91

Query: 129 FKKTPGAGESSEDNSDHSSVNIMSAFESP---FGPNSNGSQSSNSWKIDSLSLNREFGYQ 185
            KK      +S+D S     ++  A + P      + N   + N  ++     +     +
Sbjct: 92  EKKAKLLEINSDDESP-ECCHVKPAIQEPPIVISDDDNDDDNGNDLEVPD---DNSDDSE 147

Query: 186 KLDVKSIDDEDVDENEDDVYGNSSGRKHRGHSESPEKNGAHS 227
             D  S D E  D+N DD   + +   +   SE+P+ N   S
Sbjct: 148 APDDNSDDSEAPDDNSDD---SEAPDDNSDDSEAPDDNSDDS 186



 Score = 33.1 bits (74), Expect = 0.23
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 80  PEQETDPLPVVSRNVSADAKCKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESS 139
           P+  +D       N S D++   +     +  +  S D E  + NS D       + +SS
Sbjct: 139 PDDNSDDSEAPDDN-SDDSEAPDDNSDDSEAPDDNSDDSEAPDDNSDDSDVPDDNSDDSS 197

Query: 140 EDNSDHSSVNIMSAFESPFGPNSNGSQSSNSWKIDSLSLNREFGYQKLDVKSIDDEDVDE 199
           +DNSD SS +     + P   + +     +S     +  +     +  D  S D E  D+
Sbjct: 198 DDNSDDSSDDNSDDSDVPDDKSDDSDVPDDSSDDSDVPDDSSDDSEAPDDSSDDSEAPDD 257

Query: 200 NEDD 203
           + DD
Sbjct: 258 SSDD 261


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.306    0.125    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,213,185
Number of Sequences: 37866
Number of extensions: 463847
Number of successful extensions: 1753
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 1545
Number of HSP's gapped (non-prelim): 243
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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