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Search of human proteins with 59853162
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|59853162 thymine-DNA glycosylase [Homo sapiens]
(410 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|59853162 thymine-DNA glycosylase [Homo sapiens] 839 0.0
gi|194294554 SET binding protein 1 isoform a [Homo sapiens] 40 0.003
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 40 0.004
gi|148277037 AP2 associated kinase 1 [Homo sapiens] 40 0.005
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 39 0.007
gi|33695153 guanine nucleotide binding protein (G protein), alph... 38 0.015
gi|110349719 titin isoform N2-A [Homo sapiens] 38 0.019
gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens] 38 0.019
gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens] 38 0.019
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 37 0.042
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ... 36 0.055
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 36 0.055
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ... 36 0.055
gi|207113199 erythrocyte membrane protein band 4.1-like 2 isofor... 35 0.12
gi|207113195 erythrocyte membrane protein band 4.1-like 2 isofor... 35 0.12
gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform ... 35 0.12
gi|158534059 formin binding protein 4 [Homo sapiens] 35 0.12
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 35 0.16
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 35 0.16
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 35 0.16
gi|7706589 GNAS complex locus NESP55 [Homo sapiens] 34 0.27
gi|169166302 PREDICTED: similar to SET translocation [Homo sapiens] 34 0.27
gi|71051596 coiled-coil domain containing 7 [Homo sapiens] 34 0.27
gi|37059792 coiled-coil domain containing 7 [Homo sapiens] 34 0.27
gi|4758616 jun oncogene [Homo sapiens] 33 0.36
gi|18860857 menin isoform 1 [Homo sapiens] 33 0.36
gi|18860855 menin isoform 1 [Homo sapiens] 33 0.36
gi|18860851 menin isoform 1 [Homo sapiens] 33 0.36
gi|18860849 menin isoform 1 [Homo sapiens] 33 0.36
gi|18860853 menin isoform 1 [Homo sapiens] 33 0.36
>gi|59853162 thymine-DNA glycosylase [Homo sapiens]
Length = 410
Score = 839 bits (2168), Expect = 0.0
Identities = 410/410 (100%), Positives = 410/410 (100%)
Query: 1 MEAENAGSYSLQQAQAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG 60
MEAENAGSYSLQQAQAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG
Sbjct: 1 MEAENAGSYSLQQAQAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG 60
Query: 61 RKRKPRTTEPKQPVEPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDRFNGVSEAELL 120
RKRKPRTTEPKQPVEPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDRFNGVSEAELL
Sbjct: 61 RKRKPRTTEPKQPVEPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDRFNGVSEAELL 120
Query: 121 TKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHT 180
TKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHT
Sbjct: 121 TKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHT 180
Query: 181 LPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSK 240
LPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSK
Sbjct: 181 LPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSK 240
Query: 241 EVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLK 300
EVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLK
Sbjct: 241 EVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLK 300
Query: 301 GIERNMDVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYGENPCSSEPCGFSS 360
GIERNMDVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYGENPCSSEPCGFSS
Sbjct: 301 GIERNMDVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYGENPCSSEPCGFSS 360
Query: 361 NGLIESVELRGESAFSGIPNGQWMTQSFTDQIPSFSNHCGTQEQEEESHA 410
NGLIESVELRGESAFSGIPNGQWMTQSFTDQIPSFSNHCGTQEQEEESHA
Sbjct: 361 NGLIESVELRGESAFSGIPNGQWMTQSFTDQIPSFSNHCGTQEQEEESHA 410
>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
Length = 1596
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 28 EAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRK---------PRTTEPKQPVEPKK 78
EAP + +P P P P P+ + P+G KRK P+ + P+QP+ ++
Sbjct: 1518 EAPPLPPPPPPPLPPPPPPPLPPPPPLPKTPRGGKRKHKPQAPAQPPQQSPPQQPLPQEE 1577
Query: 79 PVESKKSGKSAKSKEK 94
V++K+ KS S+ +
Sbjct: 1578 EVKAKRQRKSRGSESE 1593
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 40.0 bits (92), Expect = 0.004
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 51 QEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSAKSKE-KQEKITDTFKVKRKVD 109
+EP + + K R +PK+ EPK+P E +K+ + K+KE K+ K D K RK
Sbjct: 99 KEPGDQEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPR 158
Query: 110 RFNGVSEAE 118
+G EA+
Sbjct: 159 EASGTKEAK 167
Score = 31.2 bits (69), Expect = 1.8
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 37 EQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTT-EPKQPVEPKKPVESK--KSGKSAKSKE 93
+++ P + A + + PK RKR+P+ EP++ EPKK E K K AK
Sbjct: 97 KKKEPGDQEGAAKGSKDREPKPK-RKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKAR 155
Query: 94 KQEKITDTFKVKRK 107
K + + T + K K
Sbjct: 156 KPREASGTKEAKEK 169
Score = 30.8 bits (68), Expect = 2.3
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 19/79 (24%)
Query: 51 QEPVQEAPKGRKRKP-RTTEPKQPVEPKKPVESKKS-----------GKSAK-------S 91
QE + K R+ KP R EPK+P EP+K E KK+ K A+ +
Sbjct: 104 QEGAAKGSKDREPKPKRKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGT 163
Query: 92 KEKQEKITDTFKVKRKVDR 110
KE +EK + T R R
Sbjct: 164 KEAKEKRSCTDSAARTKSR 182
>gi|148277037 AP2 associated kinase 1 [Homo sapiens]
Length = 961
Score = 39.7 bits (91), Expect = 0.005
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 12 QQAQAFYTFPFQQLMAEA------PNMAVVNEQQ-MPEEVPAPAPAQEPVQEAPKGRKRK 64
QQ Q QQLM + P MA + Q P P PAPAQEP +AP ++ K
Sbjct: 543 QQQQLATALHQQQLMTQQAALQQKPTMAAGQQPQPQPAAAPQPAPAQEPAIQAPVRQQPK 602
Query: 65 PRTTEPK----QPVEPKKPVESKKSGKS 88
+TT P Q V P S K+ ++
Sbjct: 603 VQTTPPPAVQGQKVGSLTPPSSPKTQRA 630
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 39.3 bits (90), Expect = 0.007
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 37 EQQMPEEVPAPAPAQEPVQEAPKG--RKRKPRTTEPKQPVEPKKPVESK-------KSGK 87
E + P E +P A+ PV+E K + P E K P E K P ++K KS +
Sbjct: 591 EAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPE 650
Query: 88 SAKSKEKQE 96
AKS EK+E
Sbjct: 651 KAKSPEKEE 659
Score = 37.4 bits (85), Expect = 0.025
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 37 EQQMPEEVPAPAPAQEPVQEAPKG--------RKRKPRTTEPKQPVEPKKPV-ESKKSGK 87
E + P EV +P A+ P +E K + + P E K P E K PV E KS
Sbjct: 571 EAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPA 630
Query: 88 SAKSKEKQEKIT 99
KS EK + T
Sbjct: 631 EVKSPEKAKSPT 642
Score = 37.0 bits (84), Expect = 0.032
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 37 EQQMPEEVPAPAPAQEPVQEAPKG--RKRKPRTTEPKQPVEPKKPVESK-------KSGK 87
E + P EV +P A+ P +E K + P E K P E K P ++K KS
Sbjct: 537 EAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPA 596
Query: 88 SAKSKEK 94
AKS EK
Sbjct: 597 EAKSPEK 603
Score = 37.0 bits (84), Expect = 0.032
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 21 PFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPV 80
P + + E P A E++ P +EAPK KP+ E K+P +KP
Sbjct: 830 PQEVKVKEPPKKA--EEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPA-VEKPK 886
Query: 81 ESKKSGKSAKSKEKQEKITDTFKVKRKVD 109
ESK K ++++K++ T + KV+
Sbjct: 887 ESKVEAKKEEAEDKKKVPTPEKEAPAKVE 915
Score = 36.6 bits (83), Expect = 0.042
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 37 EQQMPEEVPAP---APAQEPVQEAPKGR------KRKP---RTTEPKQPVEPKKPVESKK 84
E + ++VP P APA+ V+E K + K++P + EP +P E K+ KK
Sbjct: 896 EAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKK 955
Query: 85 SGKSAKSKEKQEKITDTFKVK 105
K K+K+ +EK K K
Sbjct: 956 DTKEEKAKKPEEKPKTEAKAK 976
Score = 35.8 bits (81), Expect = 0.072
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 27 AEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG--RKRKPRTTEPKQPVEPKKPV-ESK 83
A++P A E+ EE +P A+ PV+ K + + P E K P + K PV E
Sbjct: 646 AKSPEKAKSPEK---EEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEA 702
Query: 84 KSGKSAKSKEKQE 96
KS + AKS K+E
Sbjct: 703 KSPEKAKSPVKEE 715
Score = 34.7 bits (78), Expect = 0.16
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 42 EEVPAPAPAQEPVQEAPKG--RKRKPRTTEPKQPVEPKKPVESK-KSGKSAKSKEKQE 96
EE +P A+ P +E K + + P E K P + K PV+++ KS + AKS K+E
Sbjct: 644 EEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEE 701
Score = 33.5 bits (75), Expect = 0.36
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 27 AEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG--RKRKPRTTEPKQPVEPKKPV-ESK 83
A++P A + + E +P A+ PV+ K + + P E K P + K PV E
Sbjct: 660 AKSPEKA---KSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEA 716
Query: 84 KSGKSAKSKEKQEKIT 99
KS + AKS K+E T
Sbjct: 717 KSPEKAKSPVKEEAKT 732
Score = 33.1 bits (74), Expect = 0.47
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 42 EEVPAPAP-AQEPVQEAPKG--RKRKPRTTEPKQPVEPKKPVESK-------KSGKSAKS 91
EE +P A+ PV+E K + P E K P E K P ++K KS AKS
Sbjct: 507 EEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKS 566
Query: 92 KEKQE 96
EK+E
Sbjct: 567 PEKEE 571
Score = 32.7 bits (73), Expect = 0.61
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 24 QLMAEAPNMAVVNEQQMPEEVPAPAPAQEPV-QEAPKGRKRKPRT---------TEPKQP 73
++ + P+ A E P E AP ++ +E K + KP+T T K+P
Sbjct: 927 EVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEP 986
Query: 74 VEPKKPVESKKSGKSAKSKEKQEKITDTFKVKRK 107
+PK K S K + EK T+ K K
Sbjct: 987 SKPKAEKAEKSSSTDQKDSKPPEKATEDKAAKGK 1020
Score = 32.0 bits (71), Expect = 1.0
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 24/102 (23%)
Query: 27 AEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG--RKRKPRTTEPKQPVEPKKPV-ESK 83
A++P A + + EE +P A+ PV+E K + + P E K P + K PV E
Sbjct: 688 AKSPEKA---KSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEA 744
Query: 84 KSGKSAKS------------------KEKQEKITDTFKVKRK 107
KS + AKS KE+ D F K K
Sbjct: 745 KSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAK 786
Score = 31.2 bits (69), Expect = 1.8
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 42 EEVPAPAPAQEPVQEAPKG--------RKRKPRTTEPKQPVEPKKPVESK-------KSG 86
EE +P A+ P +E K + + P E K P E K P ++K KS
Sbjct: 556 EEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSP 615
Query: 87 KSAKSKEKQE 96
AKS K+E
Sbjct: 616 AEAKSPVKEE 625
Score = 30.0 bits (66), Expect = 4.0
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 21/87 (24%)
Query: 42 EEVPAPAPAQEPVQEAPKGRKRK-PRTTEPKQPV------------EPKKPVESKKSG-- 86
EEV +P A+ P++E K +++ P+ E K PV EP K E +K+
Sbjct: 791 EEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPAT 850
Query: 87 ------KSAKSKEKQEKITDTFKVKRK 107
K +K +E +K KV+ K
Sbjct: 851 PKTEEKKDSKKEEAPKKEAPKPKVEEK 877
Score = 29.6 bits (65), Expect = 5.2
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 42 EEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKP-VESKKSGKSAKSKEK 94
EE +P PA+E +P+ + P E K P E K P E KS KS EK
Sbjct: 499 EETKSP-PAEEAA--SPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEK 549
>gi|33695153 guanine nucleotide binding protein (G protein), alpha
activating activity polypeptide, olfactory type isoform
1 [Homo sapiens]
Length = 458
Score = 38.1 bits (87), Expect = 0.015
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 36 NEQQMPEEVPAPAPAQEPVQEA---------PKGRKRKPRTTEPK--QPVEPKKPVESKK 84
+E + + PAPAPA PV+ A P+G + P PK +P E ++ E
Sbjct: 23 SEPPVEDAQPAPAPALAPVRAAARDTARTLLPRGGEGSPACARPKADKPKEKRQRTEQLS 82
Query: 85 SGKSAKSKEKQEKITDTFKVKRKVDR 110
+ + +KE+ E + + KV R +DR
Sbjct: 83 AEEREAAKER-EAVKEARKVSRGIDR 107
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 37.7 bits (86), Expect = 0.019
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 42 EEVPAPAPAQEPVQEAPKGRKRKPRTTE-----PKQPVEPKKPVESKK 84
EE P PA + P ++ P+ RK PR E PK P PKKPV +K
Sbjct: 9392 EESPPPAVPEIPKKKVPEERKPVPRKEEEVPPPPKVPALPKKPVPEEK 9439
Score = 37.4 bits (85), Expect = 0.025
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 30 PNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKK----- 84
P + E+ P +VP P ++ P +K + PK P EPKKPV KK
Sbjct: 9566 PKIPAKIEEPPPAKVPEAPKKIVPEKKVPAPVPKKEKVPPPKVPEEPKKPVPEKKVPPKV 9625
Query: 85 ----SGKSAKSKEKQEKITDTFKV 104
AK E+ +IT KV
Sbjct: 9626 IKMEEPLPAKVTERHMQITQEEKV 9649
Score = 37.0 bits (84), Expect = 0.032
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 21 PFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRK---RKPRTTEPKQPVEPK 77
P +++ E V E++ PE VP PA +EP + P+ + +KP PK+P EP+
Sbjct: 10812 PEEEIAPEEEKPVPVAEEEEPE-VPPPAVPEEPKKIIPEKKVPVIKKPEAPPPKEP-EPE 10869
Query: 78 KPVESKK 84
K +E K
Sbjct: 10870 KVIEKPK 10876
Score = 34.3 bits (77), Expect = 0.21
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 26 MAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKK------- 78
+ E P V +P++V PAP V + P ++KP K+P P K
Sbjct: 9291 LPEKPAPEEVAPVPIPKKVEPPAPKVPEVPKKPVPEEKKPVPVPKKEPAAPPKVPEVPKK 9350
Query: 79 ---------PVESKKSGKSAKSKEKQEKITDTFKV 104
PV KK AK E Q+ + K+
Sbjct: 9351 PVPEEKIPVPVAKKKEAPPAKVPEVQKGVVTEEKI 9385
Score = 33.9 bits (76), Expect = 0.27
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 28 EAPNMAVVNEQ-QMPEE-------VPAPAPAQE--PVQEAPKGRKRKPRTTEPKQPVEPK 77
E P VV E+ ++PEE VP P +E P ++ P +KP PK P PK
Sbjct: 10471 EVPKKIVVEEKVRVPEEPRVPPTKVPEVLPPKEVVPEKKVPVPPAKKPEAPPPKVPEAPK 10530
Query: 78 KPVESKK 84
+ V KK
Sbjct: 10531 EVVPEKK 10537
Score = 33.5 bits (75), Expect = 0.36
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 28 EAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGK 87
E ++A+ + P +VP P + AP +K PK P PKKPV +K
Sbjct: 9272 EKIHVAISKRVEPPPKVPELPEKPAPEEVAPVPIPKKVEPPAPKVPEVPKKPVPEEKKPV 9331
Query: 88 SAKSKE 93
KE
Sbjct: 9332 PVPKKE 9337
Score = 33.5 bits (75), Expect = 0.36
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 33 AVVNEQQMPEEVPAPAPAQEP--VQEAPK----------GRKRKPRTTEPKQPVEPKKPV 80
A V E+++PE +P P P P V EAPK +KP T K P PK+ V
Sbjct: 10559 AAVPEKKVPEAIP-PKPESPPPEVPEAPKEVVPEKKVPAAPPKKPEVTPVKVPEAPKEVV 10617
Query: 81 ESKK 84
KK
Sbjct: 10618 PEKK 10621
Score = 32.0 bits (71), Expect = 1.0
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 26 MAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG---RKRKPRTTEPKQPVEPKK-PVE 81
+ E +V + ++P ++ P PA+ P EAPK K+ P K+ V P K P E
Sbjct: 9554 VTERQEKKIVLKPKIPAKIEEPPPAKVP--EAPKKIVPEKKVPAPVPKKEKVPPPKVPEE 9611
Query: 82 SKKSGKSAKSKEKQEKITDTFKVK 105
KK K K K+ + K
Sbjct: 9612 PKKPVPEKKVPPKVIKMEEPLPAK 9635
Score = 32.0 bits (71), Expect = 1.0
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 28 EAPNMAVVNEQQMPEEVPAPAPAQEP-----------VQEAPKGRKRKPRTTEPKQ-PVE 75
E P +AV E+++PE +P P P P ++E P +P P Q V
Sbjct: 10639 EVPKVAVP-EKKVPEAIP-PKPESPPPEVFEEPEEVALEEPPAEVVEEPEPAAPPQVTVP 10696
Query: 76 PKKPVESKKS 85
PKKPV KK+
Sbjct: 10697 PKKPVPEKKA 10706
Score = 32.0 bits (71), Expect = 1.0
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 23 QQLMAEAPNMAVVNEQQ--MPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPV 80
+++ E P VV E + P +V P P ++AP +KP K P PK+ V
Sbjct: 10670 EEVALEEPPAEVVEEPEPAAPPQVTVPPKKPVPEKKAPAVVAKKPELPPVKVPEVPKEVV 10729
Query: 81 ESKK 84
KK
Sbjct: 10730 PEKK 10733
Score = 31.2 bits (69), Expect = 1.8
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 28 EAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGK 87
+AP V+ + E+VP P P +K KP PK P EPKK E +K
Sbjct: 9808 KAPPAKVLKKAVPEEKVPVPIP-----------KKLKP--PPPKVPEEPKKVFE-EKIRI 9853
Query: 88 SAKSKEKQEKITDTFKVKRKVDR 110
S +EK++ KV K R
Sbjct: 9854 SITKREKEQVTEPAAKVPMKPKR 9876
Score = 30.8 bits (68), Expect = 2.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 41 PEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKK 84
P +VP A P ++ P+ KP + P+ P PK+ V KK
Sbjct: 10550 PTKVPEVPKAAVPEKKVPEAIPPKPESPPPEVPEAPKEVVPEKK 10593
Score = 30.4 bits (67), Expect = 3.0
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 28 EAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGK 87
+ P + E+ P +VP P ++ P +K K P PKKPV KK
Sbjct: 9988 KVPVLIPKKEKPPPAKVPEVPKKPVPEEKVPVPVPKKVEAPPAKVPEVPKKPVPEKKVPV 10047
Query: 88 SAKSK 92
A K
Sbjct: 10048 PAPKK 10052
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 41 PEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSAKSKEK 94
PE P P E V E PK + R P P P PK+ V+ K A K+K
Sbjct: 10858 PEAPPPKEPEPEKVIEKPKLKPRPP----PPPPAPPKEDVKEKIFQLKAIPKKK 10907
Score = 29.3 bits (64), Expect = 6.8
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 41 PEEVPAPAPA--QEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKK 84
PE PA P +E V E +KP K P PKKPV +K
Sbjct: 10742 PEAPPAKVPEVPKEVVPEKKVAVPKKPEVPPAKVPEVPKKPVLEEK 10787
Score = 28.9 bits (63), Expect = 8.8
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 26 MAEAPNMAVVNEQQMPEEVPA------------PAPAQEPVQEAPKGRKRK---PRTTEP 70
+ E P ++E+++PEE P+ P ++ V EAP +K P
Sbjct: 10237 VTEEPEEEPISEEEIPEEPPSIEEVEEVAPPRVPEVIKKAVPEAPTPVPKKVEAPPAKVS 10296
Query: 71 KQPVEPKKPVE-SKKSGKSAKSKEKQEKITD 100
K+ E K PV KK AK E +K+ +
Sbjct: 10297 KKIPEEKVPVPVQKKEAPPAKVPEVPKKVPE 10327
Score = 28.9 bits (63), Expect = 8.8
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 28 EAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGK 87
+AP + + P +VP P ++ P +KP K P PK+ V KK
Sbjct: 10705 KAPAVVAKKPELPPVKVPEVPKEVVPEKKVPLVVPKKPEAPPAKVPEVPKEVVPEKKVAV 10764
Query: 88 SAKSKEKQEKITDTFK 103
K + K+ + K
Sbjct: 10765 PKKPEVPPAKVPEVPK 10780
Score = 28.9 bits (63), Expect = 8.8
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 27 AEAPNMAVVNEQQ--MPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQP--VEPKKPVES 82
AE+P V E + PEE AP ++PV A + P P++P + P+K V
Sbjct: 10796 AESPPPEVYEEPEEIAPEEEIAPEE-EKPVPVAEEEEPEVPPPAVPEEPKKIIPEKKVPV 10854
Query: 83 KKSGKSAKSKEKQ-EKITDTFKVK 105
K ++ KE + EK+ + K+K
Sbjct: 10855 IKKPEAPPPKEPEPEKVIEKPKLK 10878
>gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 37.7 bits (86), Expect = 0.019
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 29 APNMAVVNEQQMPEEVPAP-APAQEPVQEAPKG--RKRKPRTTEPKQP-VEPKKPVESKK 84
+P A+V Q+ P EVP P P P KG + RK TT ++P PKK + ++
Sbjct: 36 SPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEE 95
Query: 85 SGKSAKSKEKQE 96
G S +S E+++
Sbjct: 96 EGISQESSEEEQ 107
>gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 37.7 bits (86), Expect = 0.019
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 29 APNMAVVNEQQMPEEVPAP-APAQEPVQEAPKG--RKRKPRTTEPKQP-VEPKKPVESKK 84
+P A+V Q+ P EVP P P P KG + RK TT ++P PKK + ++
Sbjct: 36 SPGTALVGSQKEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEE 95
Query: 85 SGKSAKSKEKQE 96
G S +S E+++
Sbjct: 96 EGISQESSEEEQ 107
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 36.6 bits (83), Expect = 0.042
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 10 SLQQA-QAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKG--RKRKPR 66
SLQ+A Q QQ + Q P AP+P ++P +E+PK +K PR
Sbjct: 3370 SLQEAIQQQQQRQLQQQQQQKVQQQQPKASQTPVPPGAPSPDKDPAKESPKPEEQKNTPR 3429
Query: 67 TTEPKQPVEPKKPVESKKSGKS 88
P P P++P KS S
Sbjct: 3430 EVSPLLPKLPEEPEAESKSADS 3451
Score = 34.7 bits (78), Expect = 0.16
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 23 QQLMAEAPNMAVVNEQQMPEEVPAPA----PAQEPVQEAPKGRKRKPRTTEPKQPVEPKK 78
Q+ + + V +Q + P P P ++P +E+PK ++K T P+ PK
Sbjct: 3380 QRQLQQQQQQKVQQQQPKASQTPVPPGAPSPDKDPAKESPKPEEQK-NTPREVSPLLPKL 3438
Query: 79 PVESKKSGKSAKS 91
P E + KSA S
Sbjct: 3439 PEEPEAESKSADS 3451
Score = 31.6 bits (70), Expect = 1.4
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 22 FQQLMAEAPNMAVVNEQ-QMPEEVP--APAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKK 78
F QL AEA +A N + + +E P A AP+ +P Q K + KP + +QP +
Sbjct: 2406 FLQLTAEAEELATFNSKTEAGDEKPKLAEAPSAQPNQTQEKQGQPKPELQQQEQPEQKTN 2465
Query: 79 PVESK 83
+ K
Sbjct: 2466 TPQQK 2470
>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
sapiens]
Length = 722
Score = 36.2 bits (82), Expect = 0.055
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 30/107 (28%)
Query: 25 LMAEAPNMAVVNEQQM-------PEEVPAPAPAQEPVQEAP-------------KGRKRK 64
L+ + P M VV Q + P+ P PAPA +PVQ P KG KRK
Sbjct: 232 LIVQTPVMTVVPPQPLQTPPPVPPQPQPPPAPAPQPVQSHPPIIAATPQPVKTKKGVKRK 291
Query: 65 PRTT----------EPKQPVEPKKPVESKKSGKSAKSKEKQEKITDT 101
TT P P EPK ++ S K ++ + D+
Sbjct: 292 ADTTTPTTIDPIHEPPSLPPEPKTTKLGQRRESSRPVKPPKKDVPDS 338
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 36.2 bits (82), Expect = 0.055
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 30/107 (28%)
Query: 25 LMAEAPNMAVVNEQQM-------PEEVPAPAPAQEPVQEAP-------------KGRKRK 64
L+ + P M VV Q + P+ P PAPA +PVQ P KG KRK
Sbjct: 232 LIVQTPVMTVVPPQPLQTPPPVPPQPQPPPAPAPQPVQSHPPIIAATPQPVKTKKGVKRK 291
Query: 65 PRTT----------EPKQPVEPKKPVESKKSGKSAKSKEKQEKITDT 101
TT P P EPK ++ S K ++ + D+
Sbjct: 292 ADTTTPTTIDPIHEPPSLPPEPKTTKLGQRRESSRPVKPPKKDVPDS 338
Score = 30.4 bits (67), Expect = 3.0
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 33 AVVNEQQMPEEVPA--------PAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKK 84
A V+ Q PE P P P AP K+K EPK PV PKK ++ K
Sbjct: 1142 APVHLPQRPEMKPVDVGRPVIRPPEQNAPPPGAPDKDKQKQ---EPKTPVAPKKDLKIKN 1198
Query: 85 SGKSAKSKEKQEKITDTFKVKRKVDRF 111
G A +K T + K D F
Sbjct: 1199 MGSWASLVQK-HPTTPSSTAKSSSDSF 1224
>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
[Homo sapiens]
Length = 510
Score = 36.2 bits (82), Expect = 0.055
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 13 QAQAFYTFPFQQLMAEAPNMAVVNEQ------QMPEEVPAPAPAQEPVQEAPKGRKRKPR 66
QAQA P ++ E A V + ++P+++ P A ++ K ++R
Sbjct: 375 QAQAALAAPKKKTKKEKQQDATVEPETEVVGPELPDDLE-PQAAPTSTKKKKKKKERGHT 433
Query: 67 TTEPKQPVEPKKPVESKKSGKSAKSKEKQEK 97
TEP QP+EP+ P E + ++ K+ K
Sbjct: 434 VTEPIQPLEPELPGEGQPEARATPGSTKKRK 464
Score = 29.6 bits (65), Expect = 5.2
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 37 EQQMPE-----EVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPV 74
E +MPE E+P P E +EAP GR +K R + +QPV
Sbjct: 469 ESRMPETVPQEEMPGPPLNSESGEEAPTGRDKK-RKQQQQQPV 510
>gi|207113199 erythrocyte membrane protein band 4.1-like 2 isoform b
[Homo sapiens]
Length = 673
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 30 PNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSA 89
P AVV EQ + +E P P ++ +A + ++K E K V+ +KP SK+ S
Sbjct: 102 PTQAVVEEQVLDKEEPLPEEQRQAKGDAEEMAQKK---QEIKVEVKEEKPSVSKEEKPSV 158
Query: 90 K----------SKEKQEKITDT 101
SKE++EK+ +T
Sbjct: 159 SKVEMQPTELVSKEREEKVKET 180
>gi|207113195 erythrocyte membrane protein band 4.1-like 2 isoform b
[Homo sapiens]
Length = 673
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 30 PNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSA 89
P AVV EQ + +E P P ++ +A + ++K E K V+ +KP SK+ S
Sbjct: 102 PTQAVVEEQVLDKEEPLPEEQRQAKGDAEEMAQKK---QEIKVEVKEEKPSVSKEEKPSV 158
Query: 90 K----------SKEKQEKITDT 101
SKE++EK+ +T
Sbjct: 159 SKVEMQPTELVSKEREEKVKET 180
>gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform a
[Homo sapiens]
Length = 1005
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 13/82 (15%)
Query: 30 PNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSA 89
P AVV EQ + +E P P ++ +A + ++K E K V+ +KP SK+ S
Sbjct: 102 PTQAVVEEQVLDKEEPLPEEQRQAKGDAEEMAQKK---QEIKVEVKEEKPSVSKEEKPSV 158
Query: 90 K----------SKEKQEKITDT 101
SKE++EK+ +T
Sbjct: 159 SKVEMQPTELVSKEREEKVKET 180
>gi|158534059 formin binding protein 4 [Homo sapiens]
Length = 1017
Score = 35.0 bits (79), Expect = 0.12
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 10 SLQQAQAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTE 69
SLQ QA P ++ P P P PAP P ++ KGRK K + ++
Sbjct: 887 SLQPVQARGAVPTATIIEPPP------PPPPPPPPPPPAPKMPPPEKTKKGRKDKAKKSK 940
Query: 70 PKQPVEPKK----PVESKKSGKSAKSKEKQE----KITDTFKVKRKVDRFNGVSEAELLT 121
K P KK E + S+ S+E +E K + +K ++ V +G++E
Sbjct: 941 TKMPSLVKKWQSIQRELDEEDNSSSSEEDRESTAQKRIEEWKQQQLV---SGMAERNANF 997
Query: 122 KTLPD 126
+ LP+
Sbjct: 998 EALPE 1002
Score = 30.4 bits (67), Expect = 3.0
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 26 MAEAPNMAVVNEQQMPEEVPAPAPAQEPVQE---APKGRKRKPRTTEPKQPVEPKK---- 78
+A AP + E +P + AP+ +PVQ P +P P P P
Sbjct: 865 LAAAPAIMSYAECSVP--IGVTAPSLQPVQARGAVPTATIIEPPPPPPPPPPPPPPAPKM 922
Query: 79 -PVESKKSGKSAKSKEKQEKITDTFK----VKRKVDRFNGVSEAE 118
P E K G+ K+K+ + K+ K ++R++D + S +E
Sbjct: 923 PPPEKTKKGRKDKAKKSKTKMPSLVKKWQSIQRELDEEDNSSSSE 967
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 34.7 bits (78), Expect = 0.16
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 21 PFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPK 71
P QQ + P +QQ P++ P P P Q+ Q+ P+ R PR P+
Sbjct: 95 PQQQQQQQQP------QQQQPQQQPQPQPQQQQPQQQPQALPRYPREVPPR 139
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 34.7 bits (78), Expect = 0.16
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 21 PFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPV 80
P + E + V + + E+ +P P + PV+E K K E + PK PV
Sbjct: 629 PVPKSPVEEKGKSPVPKSPVEEKGKSPVP-KSPVEEKGKSPVSKSPVEEKAKSPVPKSPV 687
Query: 81 ESKKS----GKSAKSKEKQEKITDT---FKVKRKVDRFNGVSE 116
E KS GK + +E+++++ + KV++K ++ V E
Sbjct: 688 EEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPE 730
Score = 33.9 bits (76), Expect = 0.27
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 39 QMPEEVPAPAPAQEPVQEAPKGR------KRKPRTTEPKQPVE-------PKKPVESKKS 85
+ PE+ +P P + PV+E K + K ++ PK PVE PK PVE K
Sbjct: 608 EKPEKAKSPVP-KSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEK-- 664
Query: 86 GKSAKSKEKQEK 97
GKS SK E+
Sbjct: 665 GKSPVSKSPVEE 676
Score = 33.5 bits (75), Expect = 0.36
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 27 AEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVE-------PKKP 79
AE E+++ E+ A +E V +A + K ++ PK PVE PK P
Sbjct: 575 AEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSP 634
Query: 80 VESKKSGKSAKSKEKQEK 97
VE K GKS K E+
Sbjct: 635 VEEK--GKSPVPKSPVEE 650
Score = 32.3 bits (72), Expect = 0.80
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 28 EAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVE-------PKKPV 80
++ +A E +V P A+ PV ++P K K + PK PVE PK PV
Sbjct: 591 KSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGK--SPVPKSPVEEKGKSPVPKSPV 648
Query: 81 ESKKSGKSAKSKEKQEK 97
E K GKS K E+
Sbjct: 649 EEK--GKSPVPKSPVEE 663
Score = 29.3 bits (64), Expect = 6.8
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 21 PFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAP------KGRKRKPRTTEPKQPV 74
P + E + V++ + E+ +P P + PV+EA KG +++ E K+
Sbjct: 655 PVPKSPVEEKGKSPVSKSPVEEKAKSPVP-KSPVEEAKSKAEVGKGEQKEEEEKEVKE-- 711
Query: 75 EPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDRFNGVSEAELLTKTL 124
P E K K K K+ EK VK + V+E +TK++
Sbjct: 712 ---APKEEKVEKKEEKPKDVPEKKKAESPVKEE-----AVAEVVTITKSV 753
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 34.7 bits (78), Expect = 0.16
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 21 PFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPV 80
P + E + V + + E+ +P P + PV+E K K E + PK PV
Sbjct: 253 PVPKSPVEEKGKSPVPKSPVEEKGKSPVP-KSPVEEKGKSPVSKSPVEEKAKSPVPKSPV 311
Query: 81 ESKKS----GKSAKSKEKQEKITDT---FKVKRKVDRFNGVSE 116
E KS GK + +E+++++ + KV++K ++ V E
Sbjct: 312 EEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPE 354
Score = 33.9 bits (76), Expect = 0.27
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 39 QMPEEVPAPAPAQEPVQEAPKGR------KRKPRTTEPKQPVE-------PKKPVESKKS 85
+ PE+ +P P + PV+E K + K ++ PK PVE PK PVE K
Sbjct: 232 EKPEKAKSPVP-KSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEK-- 288
Query: 86 GKSAKSKEKQEK 97
GKS SK E+
Sbjct: 289 GKSPVSKSPVEE 300
Score = 33.5 bits (75), Expect = 0.36
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 27 AEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVE-------PKKP 79
AE E+++ E+ A +E V +A + K ++ PK PVE PK P
Sbjct: 199 AEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSP 258
Query: 80 VESKKSGKSAKSKEKQEK 97
VE K GKS K E+
Sbjct: 259 VEEK--GKSPVPKSPVEE 274
Score = 32.3 bits (72), Expect = 0.80
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 28 EAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVE-------PKKPV 80
++ +A E +V P A+ PV ++P K K + PK PVE PK PV
Sbjct: 215 KSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGK--SPVPKSPVEEKGKSPVPKSPV 272
Query: 81 ESKKSGKSAKSKEKQEK 97
E K GKS K E+
Sbjct: 273 EEK--GKSPVPKSPVEE 287
Score = 29.3 bits (64), Expect = 6.8
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 21 PFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAP------KGRKRKPRTTEPKQPV 74
P + E + V++ + E+ +P P + PV+EA KG +++ E K+
Sbjct: 279 PVPKSPVEEKGKSPVSKSPVEEKAKSPVP-KSPVEEAKSKAEVGKGEQKEEEEKEVKE-- 335
Query: 75 EPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDRFNGVSEAELLTKTL 124
P E K K K K+ EK VK + V+E +TK++
Sbjct: 336 ---APKEEKVEKKEEKPKDVPEKKKAESPVKEE-----AVAEVVTITKSV 377
>gi|7706589 GNAS complex locus NESP55 [Homo sapiens]
Length = 245
Score = 33.9 bits (76), Expect = 0.27
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 41 PEEVPAPAP--AQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSAKSK 92
P+ P+ AP QEP Q +G + KP +P+ P E K+P E K+ + K
Sbjct: 171 PDASPSRAPPSTQEP-QSPREGEELKPEDKDPRDPEESKEPKEEKQRRRCKPKK 223
>gi|169166302 PREDICTED: similar to SET translocation [Homo sapiens]
Length = 296
Score = 33.9 bits (76), Expect = 0.27
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 32 MAVVNEQQMPEEVPAPAPAQEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSAKS 91
M+V+ + P+ AP Q + RK+ PR +P E V K G+
Sbjct: 1 MSVLQHRIWPQSSLAPK-----CQSSLLSRKKTPRPPPVLRPEETSASVGLPKKGE---- 51
Query: 92 KEKQEKITDTFKVKRKVDRFNGVSEAELL 120
KE+QE I +++ ++DR N E+L
Sbjct: 52 KEQQEAIEHIDEIQNEIDRLNEQDNEEIL 80
>gi|71051596 coiled-coil domain containing 7 [Homo sapiens]
Length = 486
Score = 33.9 bits (76), Expect = 0.27
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 51 QEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDR 110
+ +Q+ K KP K+ V K V+ K GKS S++K + FK+K +D+
Sbjct: 321 ENELQKLKDKEKTKPTNNRTKKAV---KTVKKKDKGKSEDSEKKMSPEKE-FKIKEDLDQ 376
Query: 111 FNGVSEAELLTKTLPDIL 128
V+ E+ K L + L
Sbjct: 377 VQKVARLEIENKVLQEQL 394
>gi|37059792 coiled-coil domain containing 7 [Homo sapiens]
Length = 486
Score = 33.9 bits (76), Expect = 0.27
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 51 QEPVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDR 110
+ +Q+ K KP K+ V K V+ K GKS S++K + FK+K +D+
Sbjct: 321 ENELQKLKDKEKTKPTNNRTKKAV---KTVKKKDKGKSEDSEKKMSPEKE-FKIKEDLDQ 376
Query: 111 FNGVSEAELLTKTLPDIL 128
V+ E+ K L + L
Sbjct: 377 VQKVARLEIENKVLQEQL 394
>gi|4758616 jun oncogene [Homo sapiens]
Length = 331
Score = 33.5 bits (75), Expect = 0.36
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 3 AENAGSYSLQQAQAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQEAPKGRK 62
A ++G + A FP Q + P +P+++P P + ++E P+
Sbjct: 180 ALSSGGGAPSYGAAGLAFPAQPQQQQQP------PHHLPQQMPVQHPRLQALKEEPQTVP 233
Query: 63 RKPRTTEPKQPVEPKKPVESKKSGKSAKSKEKQEKITDTFKVKRKVDRFNGVSEAELLTK 122
P T P P++ +ES++ K A+ K + +I + KRK++R ++ E K
Sbjct: 234 EMPGETPPLSPID----MESQERIK-AERKRMRNRIAASKCRKRKLER---IARLEEKVK 285
Query: 123 TL 124
TL
Sbjct: 286 TL 287
>gi|18860857 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 48 APAQEPV-QEAPKGRKRKPRT-TEPKQPVEPKKPVESKKSG 86
A A+EP +EA +GR+R PR ++P++P PKKP K G
Sbjct: 470 AEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLG 510
>gi|18860855 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 48 APAQEPV-QEAPKGRKRKPRT-TEPKQPVEPKKPVESKKSG 86
A A+EP +EA +GR+R PR ++P++P PKKP K G
Sbjct: 470 AEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLG 510
>gi|18860851 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 48 APAQEPV-QEAPKGRKRKPRT-TEPKQPVEPKKPVESKKSG 86
A A+EP +EA +GR+R PR ++P++P PKKP K G
Sbjct: 470 AEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLG 510
>gi|18860849 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 48 APAQEPV-QEAPKGRKRKPRT-TEPKQPVEPKKPVESKKSG 86
A A+EP +EA +GR+R PR ++P++P PKKP K G
Sbjct: 470 AEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLG 510
>gi|18860853 menin isoform 1 [Homo sapiens]
Length = 615
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 48 APAQEPV-QEAPKGRKRKPRT-TEPKQPVEPKKPVESKKSG 86
A A+EP +EA +GR+R PR ++P++P PKKP K G
Sbjct: 470 AEAEEPWGEEAREGRRRGPRRESKPEEPPPPKKPALDKGLG 510
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,231,603
Number of Sequences: 37866
Number of extensions: 874861
Number of successful extensions: 5815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 4926
Number of HSP's gapped (non-prelim): 874
length of query: 410
length of database: 18,247,518
effective HSP length: 105
effective length of query: 305
effective length of database: 14,271,588
effective search space: 4352834340
effective search space used: 4352834340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.