Guide to the Human Genome
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Name: MEN1 Sequence: fasta or formatted (615aa) NCBI GI: 18860849
Description:

menin isoform 1

Referenced in:

Jun / Fos Complexes

Other entries for this name:
alt mRNA [615aa] menin isoform 1
alt prot [610aa] menin isoform 2
alt mRNA [615aa] menin isoform 1
alt mRNA [615aa] menin isoform 1
alt mRNA [615aa] menin isoform 1
alt mRNA [615aa] menin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         56           2
 C cysteine            1.1          7           1
 D aspartate           4.4         27           2
 E glutamate           8.0         49           2
 F phenylalanine       3.4         21           2
 G glycine             8.1         50           2
 H histidine           2.0         12           1
 I isoleucine          3.1         19           2
 K lysine              5.0         31           2
 L leucine            10.7         66           2
 M methionine          1.5          9           1
 N asparagine          2.3         14           1
 P proline             7.3         45           4
 Q glutamine           4.7         29           2
 R arginine            6.3         39           3
 S serine              6.5         40           2
 T threonine           4.6         28           1
 V valine              7.0         43           2
 W tryptophan          1.6         10           1
 Y tyrosine            3.3         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   menin isoform 1 
MEN1                  1.000   menin isoform 1 
MEN1                  1.000   menin isoform 1 
MEN1                  1.000   menin isoform 1 
MEN1                  1.000   menin isoform 1 
MEN1                  1.000   menin isoform 1 
MEN1                  0.985   menin isoform 2 
PRB2                  0.019   proline-rich protein BstNI subfamily 2 
PRB1                  0.019   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB1                  0.016   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.016   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB4                  0.016   proline-rich protein BstNI subfamily 4 precursor [Ho...
PLEKHO2               0.015   pleckstrin homology domain containing, family O memb...
CHRM4                 0.013   cholinergic receptor, muscarinic 4 
TTN                   0.013   titin isoform N2-A 
COL14A1               0.013   collagen, type XIV, alpha 1 
XYLT1                 0.012   xylosyltransferase I 
SYN1                  0.012   synapsin I isoform Ia 
SYN1                  0.012   synapsin I isoform Ib 
PRB3                  0.012   proline-rich protein BstNI subfamily 3 precursor [H...
RANBP9                0.012   RAN binding protein 9 
LOC645781             0.012   PREDICTED: similar to mCG141871 
LOC645781             0.012   PREDICTED: similar to mCG141871 
KHSRP                 0.012   KH-type splicing regulatory protein 
SFPQ                  0.012   splicing factor proline/glutamine rich (polypyrimidin...
CIC                   0.012   capicua homolog 
CCNK                  0.012   cyclin K isoform 1 
FLJ22184              0.011   PREDICTED: hypothetical protein LOC80164 
MUPCDH                0.011   mucin and cadherin-like isoform 1 
FIGN                  0.011   fidgetin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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