Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TSPAN4 Sequence: fasta or formatted (174aa) NCBI GI: 68800032
Description:

tetraspanin 4 isoform b

Referenced in:

Integrins

Other entries for this name:
alt prot [238aa] tetraspanin 4 isoform a
alt prot [238aa] tetraspanin 4 isoform a
alt prot [238aa] tetraspanin 4 isoform a
alt prot [238aa] tetraspanin 4 isoform a
alt prot [238aa] tetraspanin 4 isoform a
alt prot [238aa] tetraspanin 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         15           1
 C cysteine            6.3         11           2
 D aspartate           4.0          7           1
 E glutamate           4.0          7           1
 F phenylalanine       6.3         11           2
 G glycine             7.5         13           1
 H histidine           1.1          2           1
 I isoleucine          5.2          9           2
 K lysine              4.6          8           2
 L leucine            14.4         25           5
 M methionine          1.7          3           1
 N asparagine          3.4          6           1
 P proline             1.7          3           1
 Q glutamine           4.0          7           2
 R arginine            1.7          3           1
 S serine              2.9          5           1
 T threonine           8.0         14           1
 V valine              6.9         12           2
 W tryptophan          2.9          5           2
 Y tyrosine            4.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetraspanin 4 isoform b 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN9                0.515   tetraspanin 9 
CD53                  0.301   CD53 antigen 
CD53                  0.301   CD53 antigen 
CD63                  0.260   CD63 antigen isoform A 
CD63                  0.240   CD63 antigen isoform B 
TSPAN8                0.231   transmembrane 4 superfamily member 3 
TSPAN3                0.213   transmembrane 4 superfamily member 8 isoform 1 
CD151                 0.208   CD151 antigen 
CD151                 0.208   CD151 antigen 
CD151                 0.208   CD151 antigen 
CD151                 0.208   CD151 antigen 
CD82                  0.184   CD82 antigen isoform 1 
TSPAN18               0.173   tetraspanin 18 isoform 2 
TSPAN11               0.173   tetraspanin 11 
TSPAN18               0.158   tetraspanin 18 isoform 1 
TSPAN33               0.155   tetraspanin 33 
TSPAN1                0.152   tetraspan 1 
CD37                  0.149   CD37 antigen isoform B 
CD37                  0.149   CD37 antigen isoform A 
TSPAN5                0.143   transmembrane 4 superfamily member 9 
TSPAN17               0.143   transmembrane 4 superfamily member 17 isoform b [Hom...
TSPAN14               0.140   tetraspanin 14 isoform 1 
TSPAN12               0.140   transmembrane 4 superfamily member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press