Guide to the Human Genome
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Name: TSPAN12 Sequence: fasta or formatted (305aa) NCBI GI: 6912528
Description:

transmembrane 4 superfamily member 12

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         15           1
 C cysteine            4.6         14           2
 D aspartate           3.6         11           1
 E glutamate           6.2         19           2
 F phenylalanine       4.9         15           2
 G glycine             4.6         14           1
 H histidine           2.0          6           1
 I isoleucine          3.9         12           2
 K lysine              3.3         10           2
 L leucine            14.1         43           4
 M methionine          5.2         16           2
 N asparagine          3.3         10           2
 P proline             3.3         10           2
 Q glutamine           3.6         11           1
 R arginine            4.9         15           2
 S serine              6.2         19           1
 T threonine           5.9         18           1
 V valine              7.9         24           2
 W tryptophan          3.3         10           1
 Y tyrosine            4.3         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane 4 superfamily member 12 
TSPAN9                0.131   tetraspanin 9 
CD151                 0.126   CD151 antigen 
CD151                 0.126   CD151 antigen 
CD151                 0.126   CD151 antigen 
CD151                 0.126   CD151 antigen 
TSPAN4                0.118   tetraspanin 4 isoform a 
TSPAN4                0.118   tetraspanin 4 isoform a 
TSPAN4                0.118   tetraspanin 4 isoform a 
TSPAN4                0.118   tetraspanin 4 isoform a 
TSPAN4                0.118   tetraspanin 4 isoform a 
TSPAN4                0.118   tetraspanin 4 isoform a 
CD63                  0.116   CD63 antigen isoform A 
CD63                  0.113   CD63 antigen isoform B 
TSPAN11               0.108   tetraspanin 11 
CD82                  0.098   CD82 antigen isoform 1 
CD9                   0.085   CD9 antigen 
TSPAN8                0.080   transmembrane 4 superfamily member 3 
TSPAN4                0.078   tetraspanin 4 isoform b 
CD81                  0.074   CD81 antigen 
TSPAN7                0.072   tetraspanin 7 
TSPAN3                0.067   transmembrane 4 superfamily member 8 isoform 1 
CD82                  0.065   CD82 antigen isoform 2 
CD37                  0.065   CD37 antigen isoform A 
TSPAN6                0.065   transmembrane 4 superfamily member 6 
TSPAN2                0.064   tetraspan 2 
TSPAN33               0.060   tetraspanin 33 
TSPAN5                0.054   transmembrane 4 superfamily member 9 
TSPAN14               0.052   tetraspanin 14 isoform 1 
CD53                  0.052   CD53 antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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