Guide to the Human Genome
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Name: TSPAN9 Sequence: fasta or formatted (239aa) NCBI GI: 5729941
Description:

tetraspanin 9

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         13           2
 C cysteine            5.9         14           2
 D aspartate           3.3          8           2
 E glutamate           3.8          9           1
 F phenylalanine       5.9         14           2
 G glycine             8.8         21           1
 H histidine           1.7          4           1
 I isoleucine          6.7         16           2
 K lysine              5.4         13           2
 L leucine            14.2         34           3
 M methionine          5.0         12           2
 N asparagine          5.9         14           2
 P proline             2.1          5           1
 Q glutamine           2.1          5           1
 R arginine            2.5          6           1
 S serine              3.8          9           1
 T threonine           5.4         13           2
 V valine              6.7         16           1
 W tryptophan          2.5          6           1
 Y tyrosine            2.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetraspanin 9 
TSPAN4                0.562   tetraspanin 4 isoform a 
TSPAN4                0.562   tetraspanin 4 isoform a 
TSPAN4                0.562   tetraspanin 4 isoform a 
TSPAN4                0.562   tetraspanin 4 isoform a 
TSPAN4                0.562   tetraspanin 4 isoform a 
TSPAN4                0.562   tetraspanin 4 isoform a 
TSPAN4                0.369   tetraspanin 4 isoform b 
CD53                  0.358   CD53 antigen 
CD53                  0.358   CD53 antigen 
CD151                 0.254   CD151 antigen 
CD151                 0.254   CD151 antigen 
CD151                 0.254   CD151 antigen 
CD151                 0.254   CD151 antigen 
CD82                  0.247   CD82 antigen isoform 1 
TSPAN8                0.231   transmembrane 4 superfamily member 3 
TSPAN18               0.231   tetraspanin 18 isoform 2 
CD63                  0.229   CD63 antigen isoform A 
CD63                  0.218   CD63 antigen isoform B 
TSPAN11               0.212   tetraspanin 11 
TSPAN18               0.208   tetraspanin 18 isoform 1 
TSPAN1                0.189   tetraspan 1 
CD82                  0.184   CD82 antigen isoform 2 
TSPAN3                0.178   transmembrane 4 superfamily member 8 isoform 1 
TSPAN14               0.176   tetraspanin 14 isoform 1 
TSPAN7                0.174   tetraspanin 7 
TSPAN33               0.174   tetraspanin 33 
TSPAN5                0.174   transmembrane 4 superfamily member 9 
CD81                  0.172   CD81 antigen 
CD9                   0.170   CD9 antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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