Guide to the Human Genome
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Name: CD63 Sequence: fasta or formatted (236aa) NCBI GI: 91199546
Description:

CD63 antigen isoform B

Referenced in:

Integrins
Lysosomes and Related Organelles

Other entries for this name:
alt prot [238aa] CD63 antigen isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         26           4
 C cysteine            6.4         15           2
 D aspartate           2.1          5           1
 E glutamate           4.2         10           1
 F phenylalanine       5.9         14           1
 G glycine             8.5         20           2
 H histidine           0.8          2           1
 I isoleucine          7.6         18           2
 K lysine              5.5         13           1
 L leucine             9.3         22           3
 M methionine          3.8          9           1
 N asparagine          5.5         13           3
 P proline             2.1          5           1
 Q glutamine           2.5          6           2
 R arginine            2.5          6           1
 S serine              4.2         10           1
 T threonine           2.5          6           1
 V valine             11.9         28           2
 W tryptophan          0.8          2           1
 Y tyrosine            2.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD63 antigen isoform B 
CD63                  0.989   CD63 antigen isoform A 
TSPAN7                0.246   tetraspanin 7 
TSPAN9                0.230   tetraspanin 9 
TSPAN33               0.223   tetraspanin 33 
TSPAN4                0.219   tetraspanin 4 isoform a 
TSPAN4                0.219   tetraspanin 4 isoform a 
TSPAN4                0.219   tetraspanin 4 isoform a 
TSPAN4                0.219   tetraspanin 4 isoform a 
TSPAN4                0.219   tetraspanin 4 isoform a 
TSPAN4                0.219   tetraspanin 4 isoform a 
CD151                 0.210   CD151 antigen 
CD151                 0.210   CD151 antigen 
CD151                 0.210   CD151 antigen 
CD151                 0.210   CD151 antigen 
TSPAN6                0.208   transmembrane 4 superfamily member 6 
TSPAN3                0.184   transmembrane 4 superfamily member 8 isoform 1 
TSPAN17               0.181   transmembrane 4 superfamily member 17 isoform b [Hom...
TSPAN4                0.181   tetraspanin 4 isoform b 
TSPAN8                0.179   transmembrane 4 superfamily member 3 
TSPAN17               0.179   transmembrane 4 superfamily member 17 isoform a [Hom...
TSPAN17               0.177   transmembrane 4 superfamily member 17 isoform c [Hom...
TSPAN14               0.177   tetraspanin 14 isoform 1 
TSPAN11               0.170   tetraspanin 11 
TSPAN5                0.168   transmembrane 4 superfamily member 9 
TSPAN18               0.162   tetraspanin 18 isoform 2 
TSPAN15               0.159   transmembrane 4 superfamily member 15 
CD53                  0.157   CD53 antigen 
CD53                  0.157   CD53 antigen 
TSPAN12               0.153   transmembrane 4 superfamily member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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