Guide to the Human Genome
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Name: TSPAN4 Sequence: fasta or formatted (238aa) NCBI GI: 68800018
Description:

tetraspanin 4 isoform a

Referenced in:

Integrins

Other entries for this name:
alt mRNA [238aa] tetraspanin 4 isoform a
alt mRNA [238aa] tetraspanin 4 isoform a
alt mRNA [238aa] tetraspanin 4 isoform a
alt mRNA [238aa] tetraspanin 4 isoform a
alt mRNA [238aa] tetraspanin 4 isoform a
alt prot [174aa] tetraspanin 4 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         25           2
 C cysteine            5.5         13           2
 D aspartate           2.9          7           1
 E glutamate           2.9          7           1
 F phenylalanine       7.1         17           2
 G glycine             8.4         20           2
 H histidine           0.8          2           1
 I isoleucine          5.0         12           2
 K lysine              3.8          9           2
 L leucine            15.1         36           5
 M methionine          2.1          5           1
 N asparagine          3.4          8           1
 P proline             1.7          4           1
 Q glutamine           3.8          9           2
 R arginine            1.7          4           1
 S serine              4.6         11           3
 T threonine           7.1         17           1
 V valine              6.7         16           2
 W tryptophan          2.9          7           2
 Y tyrosine            3.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                1.000   tetraspanin 4 isoform a 
TSPAN4                0.731   tetraspanin 4 isoform b 
TSPAN9                0.573   tetraspanin 9 
CD53                  0.333   CD53 antigen 
CD53                  0.333   CD53 antigen 
TSPAN8                0.252   transmembrane 4 superfamily member 3 
CD151                 0.252   CD151 antigen 
CD151                 0.252   CD151 antigen 
CD151                 0.252   CD151 antigen 
CD151                 0.252   CD151 antigen 
CD82                  0.226   CD82 antigen isoform 1 
TSPAN11               0.226   tetraspanin 11 
CD63                  0.224   CD63 antigen isoform A 
TSPAN18               0.214   tetraspanin 18 isoform 2 
CD63                  0.212   CD63 antigen isoform B 
TSPAN18               0.201   tetraspanin 18 isoform 1 
TSPAN3                0.197   transmembrane 4 superfamily member 8 isoform 1 
TSPAN1                0.186   tetraspan 1 
CD37                  0.182   CD37 antigen isoform A 
TSPAN14               0.182   tetraspanin 14 isoform 1 
TSPAN33               0.177   tetraspanin 33 
TSPAN5                0.175   transmembrane 4 superfamily member 9 
TSPAN17               0.171   transmembrane 4 superfamily member 17 isoform b [Hom...
TSPAN17               0.169   transmembrane 4 superfamily member 17 isoform a [Hom...
CD82                  0.167   CD82 antigen isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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