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Search of human proteins with 5902142
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902142 DNA polymerase sigma [Homo sapiens]
(542 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902142 DNA polymerase sigma [Homo sapiens] 1091 0.0
gi|94536834 PAP associated domain containing 5 isoform a [Homo s... 498 e-141
gi|94536832 PAP associated domain containing 5 isoform b [Homo s... 483 e-136
gi|167555099 PAP associated domain containing 4 [Homo sapiens] 68 2e-11
gi|167555097 PAP associated domain containing 4 [Homo sapiens] 68 2e-11
gi|167555095 PAP associated domain containing 4 [Homo sapiens] 68 2e-11
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 58 3e-08
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 49 9e-06
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 49 9e-06
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 49 9e-06
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 46 8e-05
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 44 5e-04
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 43 6e-04
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 41 0.002
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 41 0.002
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 40 0.005
gi|167736355 mucin 4 isoform a [Homo sapiens] 40 0.007
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 39 0.009
gi|33186895 selenoprotein V [Homo sapiens] 39 0.016
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 38 0.021
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 38 0.027
gi|219802034 nuclear factor related to kappaB binding protein is... 38 0.027
gi|23346420 nuclear factor related to kappaB binding protein iso... 38 0.027
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 38 0.027
gi|11641239 hypothetical protein LOC53838 [Homo sapiens] 38 0.027
gi|163965366 nascent polypeptide-associated complex alpha subuni... 38 0.027
gi|116284392 mucin 2 precursor [Homo sapiens] 37 0.046
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 37 0.046
gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens] 37 0.060
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 36 0.079
>gi|5902142 DNA polymerase sigma [Homo sapiens]
Length = 542
Score = 1091 bits (2821), Expect = 0.0
Identities = 542/542 (100%), Positives = 542/542 (100%)
Query: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 60
MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 60
Query: 61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 120
LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY
Sbjct: 61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 120
Query: 121 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 180
MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG
Sbjct: 121 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 180
Query: 181 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 240
MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV
Sbjct: 181 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 240
Query: 241 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 300
GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE
Sbjct: 241 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 300
Query: 301 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS 360
KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS
Sbjct: 301 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS 360
Query: 361 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT 420
SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT
Sbjct: 361 SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTT 420
Query: 421 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH 480
NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH
Sbjct: 421 NNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQH 480
Query: 481 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL 540
NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL
Sbjct: 481 NGMKLSMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQYNRTGWRRKKHTHTRDSLPVSL 540
Query: 541 SR 542
SR
Sbjct: 541 SR 542
>gi|94536834 PAP associated domain containing 5 isoform a [Homo
sapiens]
Length = 489
Score = 498 bits (1282), Expect = e-141
Identities = 255/386 (66%), Positives = 296/386 (76%), Gaps = 6/386 (1%)
Query: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 60
MSP PEE MR EVV RIE+V+K+LWP+ADVQIFGSF TGLYLPTSDIDLVVFGKWE P
Sbjct: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
Query: 61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 120
L LE+ALRKH VA+ S+KVLDKATVPIIKLTD TEVKVDISFN++ GVRAA+ IK++
Sbjct: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
Query: 121 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 180
KKY +LPYL+LVLKQFLLQRDLNEVFTGGI SYSL LMA+SFLQLHPR DA + N G
Sbjct: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
Query: 181 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 240
+LL+EFFELYGR+FNYLKTGIRIK+GG+Y+AK+E+ K M GYRPSML IEDPL PGNDV
Sbjct: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
Query: 241 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 300
GRSSYGAMQVKQ FDYAY+VLSHAVSP+A+ YPN + ES LGRII+VT EV YR WI +
Sbjct: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
Query: 301 KWGSKAHPSPGMDSR----IKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSG 356
+WG K P P + I +++ CN ++ E + + SLS SS
Sbjct: 301 QWGLKNRPEPSCNGNGVTLIVDTQQLDKCNNNLSEENEALGKCRSKTSESLSKHSSNSSS 360
Query: 357 S--SASSVSSLSGSDVDSDTPPCTTP 380
S+SS + S SDVDSD PC TP
Sbjct: 361 GPVSSSSATQSSSSDVDSDATPCKTP 386
>gi|94536832 PAP associated domain containing 5 isoform b [Homo
sapiens]
Length = 442
Score = 483 bits (1242), Expect = e-136
Identities = 249/380 (65%), Positives = 283/380 (74%), Gaps = 41/380 (10%)
Query: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 60
MSP PEE MR EVV RIE+V+K+LWP+ADVQIFGSF TGLYLPTSDIDLVVFGKWE P
Sbjct: 1 MSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLP 60
Query: 61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNY 120
L LE+ALRKH VA+ S+KVLDKATVPIIKLTD TEVKVDISFN++ GVRAA+ IK++
Sbjct: 61 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDF 120
Query: 121 MKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLG 180
KKY +LPYL+LVLKQFLLQRDLNEVFTGGI SYSL LMA+SFLQLHPR DA + N G
Sbjct: 121 TKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACIPNTNYG 180
Query: 181 MLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYRPSMLCIEDPLLPGNDV 240
+LL+EFFELYGR+FNYLKTGIRIK+GG+Y+AK+E+ K M GYRPSML IEDPL PGNDV
Sbjct: 181 VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDV 240
Query: 241 GRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRIIKVTQEVIDYRRWIKE 300
GRSSYGAMQVKQ FDYAY+VLSHAVSP+A+ YPN + ES LGRII+VT EV YR WI +
Sbjct: 241 GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISK 300
Query: 301 KWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSAS 360
+WG K P P +CNG S+S
Sbjct: 301 QWGLKNRPEP-------------SCNGP----------------------------VSSS 319
Query: 361 SVSSLSGSDVDSDTPPCTTP 380
S + S SDVDSD PC TP
Sbjct: 320 SATQSSSSDVDSDATPCKTP 339
>gi|167555099 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 68.2 bits (165), Expect = 2e-11
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 53/281 (18%)
Query: 17 RIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKH----- 71
+++ ++ L+P + + + GS G +SD DL + K E Q+ ++ +H
Sbjct: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
Query: 72 ------NVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYS 125
++ L +A VPI+K D+ + V+ D++ N G+R ++ Y +
Sbjct: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
Query: 126 LLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ-----------------LHP 168
+ L+LV+K++ +N+ G +SSYSL+LM + +LQ P
Sbjct: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
Query: 169 RIDAR--------------RADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEE 214
I + + NLG LL+ F + Y F++ I ++E A +
Sbjct: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
Query: 215 IMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFD 255
I +R +C+E+P G ++ A+ KQ FD
Sbjct: 423 I------EWRNKYICVEEPF-----DGTNTARAVHEKQKFD 452
>gi|167555097 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 68.2 bits (165), Expect = 2e-11
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 53/281 (18%)
Query: 17 RIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKH----- 71
+++ ++ L+P + + + GS G +SD DL + K E Q+ ++ +H
Sbjct: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
Query: 72 ------NVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYS 125
++ L +A VPI+K D+ + V+ D++ N G+R ++ Y +
Sbjct: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
Query: 126 LLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ-----------------LHP 168
+ L+LV+K++ +N+ G +SSYSL+LM + +LQ P
Sbjct: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
Query: 169 RIDAR--------------RADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEE 214
I + + NLG LL+ F + Y F++ I ++E A +
Sbjct: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
Query: 215 IMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFD 255
I +R +C+E+P G ++ A+ KQ FD
Sbjct: 423 I------EWRNKYICVEEPF-----DGTNTARAVHEKQKFD 452
>gi|167555095 PAP associated domain containing 4 [Homo sapiens]
Length = 484
Score = 68.2 bits (165), Expect = 2e-11
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 53/281 (18%)
Query: 17 RIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRKH----- 71
+++ ++ L+P + + + GS G +SD DL + K E Q+ ++ +H
Sbjct: 183 QLQREIQLLFPQSRLFLVGSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLV 242
Query: 72 ------NVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYS 125
++ L +A VPI+K D+ + V+ D++ N G+R ++ Y +
Sbjct: 243 HKHFCTRLSGYIERPQLIRAKVPIVKFRDKVSCVEFDLNVNNIVGIRNTFLLRTYAYLEN 302
Query: 126 LLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ-----------------LHP 168
+ L+LV+K++ +N+ G +SSYSL+LM + +LQ P
Sbjct: 303 RVRPLVLVIKKWASHHQINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYPESFSP 362
Query: 169 RIDAR--------------RADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEE 214
I + + NLG LL+ F + Y F++ I ++E A +
Sbjct: 363 AIQLHLVHQAPCNVPPYLSKNESNLGDLLLGFLKYYATEFDWNSQMISVREAKAIPRPDG 422
Query: 215 IMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFD 255
I +R +C+E+P G ++ A+ KQ FD
Sbjct: 423 I------EWRNKYICVEEPF-----DGTNTARAVHEKQKFD 452
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 57.8 bits (138), Expect = 3e-08
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 2 SPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVF-------- 53
SP E R + + +E+ ++ +P + +FGS G SD+D+ +
Sbjct: 1013 SPTIIEDQAREHIRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTINGLETAE 1072
Query: 54 GKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRA 113
G ++ L + LRKH+ +I + A VPI+K + ++VDIS +
Sbjct: 1073 GLDCVRTIEELARVLRKHSGLR--NILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHN 1130
Query: 114 AEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
+ Y + YL +K F D+ + G +SSY+ LM + FLQ
Sbjct: 1131 TRLLSAYSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQ 1182
Score = 39.3 bits (90), Expect = 0.009
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 3/162 (1%)
Query: 6 EEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSD--IDLVVFGKWERPPLQL 63
E R E+ + +E V + P ++++GS + L SD ID+ +P + L
Sbjct: 311 ENLEQRLEIKRIMENVFQHKLPDCSLRLYGSSCSRLGFKNSDVNIDIQFPAIMSQPDVLL 370
Query: 64 LEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKK 123
L Q K N + A VP++ ++++ + +S E + + K
Sbjct: 371 LVQECLK-NSDSFIDVDADFHARVPVVVCREKQSGLLCKVSAGNENACLTTKHLTALGKL 429
Query: 124 YSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
L L++ + + ++ GG+ Y LMAI FLQ
Sbjct: 430 EPKLVPLVIAFRYWAKLCSIDRPEEGGLPPYVFALMAIFFLQ 471
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 49.3 bits (116), Expect = 9e-06
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 3 PCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQ 62
PC E+ + ++ + + K+ A + +FGS G SD+D+ + + +
Sbjct: 965 PCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEK 1024
Query: 63 L--------LEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAA 114
L L + L++H +I + A VPI+K + + ++ DIS
Sbjct: 1025 LNCKEIIENLAKILKRHPGLR--NILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNT 1082
Query: 115 EFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
+ Y + YL +K F + D+ + G +SSY+ ILM + FLQ
Sbjct: 1083 RMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQ 1133
Score = 45.8 bits (107), Expect = 1e-04
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 6 EEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSD--IDLVVFGKWERPPLQL 63
++ +R+E+V+ + V+ P ++++GS T L +SD ID+ K P L +
Sbjct: 371 DDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLI 430
Query: 64 LEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKK 123
+ K NV ++ A VP++ D+++ + +S + + + K
Sbjct: 431 KVLGILKKNVLY-VDVESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKI 489
Query: 124 YSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
+ L+L + + ++ GGI SY LM + FLQ
Sbjct: 490 EPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ 531
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 49.3 bits (116), Expect = 9e-06
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 3 PCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQ 62
PC E+ + ++ + + K+ A + +FGS G SD+D+ + + +
Sbjct: 965 PCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEK 1024
Query: 63 L--------LEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAA 114
L L + L++H +I + A VPI+K + + ++ DIS
Sbjct: 1025 LNCKEIIENLAKILKRHPGLR--NILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNT 1082
Query: 115 EFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
+ Y + YL +K F + D+ + G +SSY+ ILM + FLQ
Sbjct: 1083 RMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQ 1133
Score = 45.8 bits (107), Expect = 1e-04
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 6 EEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSD--IDLVVFGKWERPPLQL 63
++ +R+E+V+ + V+ P ++++GS T L +SD ID+ K P L +
Sbjct: 371 DDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLI 430
Query: 64 LEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKK 123
+ K NV ++ A VP++ D+++ + +S + + + K
Sbjct: 431 KVLGILKKNVLY-VDVESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKI 489
Query: 124 YSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
+ L+L + + ++ GGI SY LM + FLQ
Sbjct: 490 EPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ 531
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 49.3 bits (116), Expect = 9e-06
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 3 PCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQ 62
PC E+ + ++ + + K+ A + +FGS G SD+D+ + + +
Sbjct: 965 PCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKNGFGFRDSDLDICMTLEGHENAEK 1024
Query: 63 L--------LEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAA 114
L L + L++H +I + A VPI+K + + ++ DIS
Sbjct: 1025 LNCKEIIENLAKILKRHPGLR--NILPITTAKVPIVKFEHRRSGLEGDISLYNTLAQHNT 1082
Query: 115 EFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
+ Y + YL +K F + D+ + G +SSY+ ILM + FLQ
Sbjct: 1083 RMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYILMVLYFLQ 1133
Score = 45.8 bits (107), Expect = 1e-04
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 6 EEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSD--IDLVVFGKWERPPLQL 63
++ +R+E+V+ + V+ P ++++GS T L +SD ID+ K P L +
Sbjct: 371 DDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDLLI 430
Query: 64 LEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKK 123
+ K NV ++ A VP++ D+++ + +S + + + K
Sbjct: 431 KVLGILKKNVLY-VDVESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTTDLLTALGKI 489
Query: 124 YSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
+ L+L + + ++ GGI SY LM + FLQ
Sbjct: 490 EPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQ 531
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
sapiens]
Length = 1758
Score = 46.2 bits (108), Expect = 8e-05
Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 12/202 (5%)
Query: 335 PESPYGQRLTLSLSSPQLLSSGSSASSVSSLSG---SDVDSDTPPCTTPSVYQFSLQAPA 391
P + +L +S PQ + G + S G S+ T + P+ F P
Sbjct: 503 PGWEHSNKLGYLVSPPQQIRRGERSCYRSINRGRHHSERSQRTQGPSLPATPVFVPVPPP 562
Query: 392 PLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASL 451
PL P LP+P G P P S +++PPP G P P + ++ +
Sbjct: 563 PLYPPPPHTLPLPPGVPPPQFSPQFPPGQPPPAGYSVPPP--GFPPAPANLSTPWVSSGV 620
Query: 452 KAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGVRPPV 511
+ H S IP+ PLS Y +Q +K K + G YS +
Sbjct: 621 QTAH---SNTIPTTQAPPLSREEFYREQRR-LKEESKSPY---SGSSYSRSSYTYSKSRS 673
Query: 512 GNRGHHQYNRTGWRRKKHTHTR 533
G+ Y+R+ R +++R
Sbjct: 674 GSTRSRSYSRSFSRSHSRSYSR 695
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 43.5 bits (101), Expect = 5e-04
Identities = 45/197 (22%), Positives = 65/197 (32%), Gaps = 5/197 (2%)
Query: 306 AHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSL 365
+H SPG + T Q SP LS S LS G +++ S
Sbjct: 2108 SHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSS 2167
Query: 366 SGSDVDSDTPPCTTPS-VYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQT 424
GS + P TT S + + S + + + T P S P T T T
Sbjct: 2168 PGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPAST 2227
Query: 425 RFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMK 484
T PP+ APV S H +S S + ++H +
Sbjct: 2228 HTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPAS----STTSGHSEKSTIFHSSPDASG 2283
Query: 485 LSMKGSHGHTQGGGYSS 501
+ +H T G G S+
Sbjct: 2284 TTPSSAHSTTSGRGEST 2300
Score = 43.5 bits (101), Expect = 5e-04
Identities = 45/197 (22%), Positives = 65/197 (32%), Gaps = 5/197 (2%)
Query: 306 AHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSL 365
+H SPG + T Q SP LS S LS G +++ S
Sbjct: 2582 SHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSS 2641
Query: 366 SGSDVDSDTPPCTTPS-VYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQT 424
GS + P TT S + + S + + + T P S P T T T
Sbjct: 2642 PGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTTFQTHPAST 2701
Query: 425 RFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMK 484
T PP+ APV S H +S S + ++H +
Sbjct: 2702 HTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPAS----STTSGHSEKSTIFHSSPDASG 2757
Query: 485 LSMKGSHGHTQGGGYSS 501
+ +H T G G S+
Sbjct: 2758 TTPSSAHSTTSGRGEST 2774
Score = 41.2 bits (95), Expect = 0.002
Identities = 44/197 (22%), Positives = 64/197 (32%), Gaps = 5/197 (2%)
Query: 306 AHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSL 365
+H SPG + T Q S LS S LS G +++ S
Sbjct: 3665 SHSSPGSTDTTLLPASTTTSGSSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSS 3724
Query: 366 SGSDVDSDTPPCTTPS-VYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQT 424
GS + P TT S + + S + + + T P S P T T T
Sbjct: 3725 PGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPAST 3784
Query: 425 RFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMK 484
T PP+ APV S H +S S + ++H +
Sbjct: 3785 HTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPAS----STTSGHSEKSTIFHSSPDASG 3840
Query: 485 LSMKGSHGHTQGGGYSS 501
+ +H T G G S+
Sbjct: 3841 TTPSSAHSTTSGRGEST 3857
Score = 40.0 bits (92), Expect = 0.005
Identities = 44/197 (22%), Positives = 64/197 (32%), Gaps = 5/197 (2%)
Query: 306 AHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSL 365
+H SPG + T Q S LS S LS G +++ S
Sbjct: 1025 SHSSPGSTDTTLLPASTTTSGPSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSN 1084
Query: 366 SGSDVDSDTPPCTTPS-VYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQT 424
GS + P TT S + + S + + + T P S P T T T
Sbjct: 1085 PGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPAST 1144
Query: 425 RFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMK 484
T PP+ APV S H +S S + ++H +
Sbjct: 1145 HTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPAS----STTSGHSEKSTIFHSSPDASG 1200
Query: 485 LSMKGSHGHTQGGGYSS 501
+ +H T G G S+
Sbjct: 1201 TTPSSAHSTTSGRGEST 1217
Score = 30.0 bits (66), Expect = 5.6
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 9/176 (5%)
Query: 306 AHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSL 365
+H PG + T + SP TL +S S +++ S
Sbjct: 3637 SHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPASTTTSGSSQESTTSHSS 3696
Query: 366 SGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTR 425
SGS + +P TT + T L P TTS ++ +
Sbjct: 3697 SGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTL-----FPDSTTSSGIVEASTRVHS 3751
Query: 426 FTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMS---SPAIPSASPNPLSSPHLYHK 478
T P T ++P G++G ++ H S +P+ PS + P+ YH+
Sbjct: 3752 STGSPRTT-LSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHR 3806
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
sapiens]
Length = 1792
Score = 43.1 bits (100), Expect = 6e-04
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 335 PESPYGQRLTLSLSSPQLLSSGSSASSVSSLSG---SDVDSDTPPCTTPSVYQFSLQAPA 391
P + +L +S PQ + G + S G S+ T + P+ F P
Sbjct: 503 PGWEHSNKLGYLVSPPQQIRRGERSCYRSINRGRHHSERSQRTQGPSLPATPVFVPVPPP 562
Query: 392 PLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASL 451
PL P LP+P G P P S +++PPP G P P + ++ +
Sbjct: 563 PLYPPPPHTLPLPPGVPPPQFSPQFPPGQPPPAGYSVPPP--GFPPAPANLSTPWVSSGV 620
Query: 452 KAVHHMSSPAIPSASPNPLSSPHLYHKQ 479
+ H S IP+ PLS Y +Q
Sbjct: 621 QTAH---SNTIPTTQAPPLSREEFYREQ 645
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 41.2 bits (95), Expect = 0.002
Identities = 50/203 (24%), Positives = 70/203 (34%), Gaps = 13/203 (6%)
Query: 306 AHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSL 365
+H SPG + T Q SP LS S LS G +++ S
Sbjct: 184 SHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSS 243
Query: 366 SGSDVDSDTPPCTTPS-VYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQT 424
GS + P TT S + + S + + + T P S P T T T
Sbjct: 244 PGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPAST 303
Query: 425 RFTIPPPTLGVAPV---------PCRQAGVEGTASLKAVHHMSSPAIPSASPNPL-SSPH 474
T PP+ APV P AS H I +SP+ ++P
Sbjct: 304 HTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPS 363
Query: 475 LYHKQHNGMKLSMKGSHGHTQGG 497
H +G +S + S H+Q G
Sbjct: 364 SAHSTTSG--VSEESSTSHSQPG 384
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 41.2 bits (95), Expect = 0.002
Identities = 50/203 (24%), Positives = 70/203 (34%), Gaps = 13/203 (6%)
Query: 306 AHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSL 365
+H SPG + T Q SP LS S LS G +++ S
Sbjct: 78 SHSSPGSTDTTLLPASTTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSS 137
Query: 366 SGSDVDSDTPPCTTPS-VYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQT 424
GS + P TT S + + S + + + T P S P T T T
Sbjct: 138 PGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPAST 197
Query: 425 RFTIPPPTLGVAPV---------PCRQAGVEGTASLKAVHHMSSPAIPSASPNPL-SSPH 474
T PP+ APV P AS H I +SP+ ++P
Sbjct: 198 HTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIFHSSPDASGTTPS 257
Query: 475 LYHKQHNGMKLSMKGSHGHTQGG 497
H +G +S + S H+Q G
Sbjct: 258 SAHSTTSG--VSEESSTSHSQPG 278
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 40.0 bits (92), Expect = 0.005
Identities = 44/197 (22%), Positives = 64/197 (32%), Gaps = 5/197 (2%)
Query: 306 AHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSL 365
+H SPG + T Q S LS S LS G +++ S
Sbjct: 512 SHSSPGSTDTTLLPASTTTSGPSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSN 571
Query: 366 SGSDVDSDTPPCTTPS-VYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQT 424
GS + P TT S + + S + + + T P S P T T T
Sbjct: 572 PGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGESTAFQTHPAST 631
Query: 425 RFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMK 484
T PP+ APV S H +S S + ++H +
Sbjct: 632 HTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPAS----STTSGHSEKSTIFHSSPDASG 687
Query: 485 LSMKGSHGHTQGGGYSS 501
+ +H T G G S+
Sbjct: 688 TTPSSAHSTTSGRGEST 704
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 39.7 bits (91), Expect = 0.007
Identities = 44/132 (33%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 348 SSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGK 407
++P +SS +SAS+VSS S + +TP TTPS+ G TA
Sbjct: 4110 ATPLAVSSATSASTVSS--DSPLKMETPGMTTPSL---------KTDGGRRTAT-----S 4153
Query: 408 PQPTTSRTLIMT---TNNQTRFTIPP----PTLGVAPVPCRQAGVEGTASLKAVHHMSSP 460
P PTTS+T+I T T TR T P P GV+ P AG ++ +SP
Sbjct: 4154 PPPTTSQTIISTIPSTAMHTRSTAAPIPILPERGVSLFP-YGAGAGDLEFVRRTVDFTSP 4212
Query: 461 AIPSASPNPLSS 472
A+ PL S
Sbjct: 4213 LFKPATGFPLGS 4224
Score = 35.8 bits (81), Expect = 0.10
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 15/144 (10%)
Query: 340 GQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPT 399
G L ++SP S+G + + + S DT P + S PL P+
Sbjct: 1596 GDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGDTTPLPVTNASSLSTGHATPLHVTSPS 1655
Query: 400 ALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVA----------PVPCRQAGVEGTA 449
+ P P TS T++ T P P G++ PV + G A
Sbjct: 1656 SASTGHATPLPVTS-----TSSASTGHATPLPVTGLSSATTDDTTRLPVTDVSSASTGQA 1710
Query: 450 SLKAVHHMSSPAIPSASPNPLSSP 473
+ V +SS + +P P++SP
Sbjct: 1711 TPLPVTSLSSVSTGDTTPLPVTSP 1734
Score = 33.9 bits (76), Expect = 0.39
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 27/141 (19%)
Query: 348 SSPQLLSSGSSASS-------VSSLSGSDVDSDTP-PCTTPSVYQFSLQAPAPLM----- 394
++P ++ SSAS+ V+SLS TP P T+PS P P+
Sbjct: 2942 ATPLPVTDTSSASTGHATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHTTPLPVTDTSSA 3001
Query: 395 -AGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKA 453
G TALP+ S T++ T T P P + QA SL +
Sbjct: 3002 STGQATALPVTS-------------TSSASTGDTTPLPVTDTSSASTGQATPLPVTSLSS 3048
Query: 454 VHHMSSPAIPSASPNPLSSPH 474
V + +P SP+ S+ H
Sbjct: 3049 VSTGDTTPLPVTSPSSASTGH 3069
Score = 31.2 bits (69), Expect = 2.5
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 5/138 (3%)
Query: 340 GQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPT 399
G L ++ S+G + S + + + S DT P S S PL P+
Sbjct: 1244 GHTTPLPVTDTSSASTGQATSLLVTDTSSVSTGDTTPLPVTSTSSASTGHVTPLHVTSPS 1303
Query: 400 ALPMPSGKPQPTTSRTLIMTTNNQTRFTIPP---PTLGVAPVPCRQAGVEGTASLKAVH- 455
+ P P TS + T + P T P+P A T +H
Sbjct: 1304 SASTGHATPLPVTSLSSASTGDTMPLPVTSPSSASTGDTTPLPVTDASSVSTGHTTPLHV 1363
Query: 456 -HMSSPAIPSASPNPLSS 472
SS + A+P P++S
Sbjct: 1364 TDASSASTGQATPLPVTS 1381
Score = 29.6 bits (65), Expect = 7.3
Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 22/180 (12%)
Query: 309 SPGMDSRIKIKERIATCNGEQTQ---NREPESPYGQRLTLSLSSPQLLSSG-------SS 358
S G D+ + + + G+ T + G L ++ +S+G +
Sbjct: 2042 STGQDTPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATPLLVTDASSVSTGHATSLLVTD 2101
Query: 359 ASSVSS-----LSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTS 413
ASSVS+ L +D S + TTP + +P+ G T LP+ T
Sbjct: 2102 ASSVSTGHATALHVTDASSLSTGDTTP----LPVTSPSSASTGDTTPLPVTDTSSVSTGH 2157
Query: 414 RTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSP 473
T + T+ + T +L PV + G A+ V SS + A+P P++SP
Sbjct: 2158 ATSLPVTDTSSASTGHATSL---PVTDTSSASTGHATPLPVTDTSSASTGQATPLPVTSP 2214
Score = 29.6 bits (65), Expect = 7.3
Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 11/146 (7%)
Query: 340 GQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPT 399
G L ++SP S+G + + + S DT P + S PL P+
Sbjct: 3884 GHATPLPVTSPSSASTGHATPVPVTSTSSASTGDTTPLPVTNASSLSTGHATPLHVTSPS 3943
Query: 400 A--------LPMPSGKPQPT---TSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGT 448
+ LP+ T T L ++ T T P P + QA
Sbjct: 3944 SASRGDTSTLPVTDASSASTGHATPLPLTSLSSVSTGDTTPLPVTDTSSASTGQATPLPV 4003
Query: 449 ASLKAVHHMSSPAIPSASPNPLSSPH 474
SL +V + +P P+ SS H
Sbjct: 4004 TSLSSVSTGDTTPLPVTIPSSASSGH 4029
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 39.3 bits (90), Expect = 0.009
Identities = 37/156 (23%), Positives = 53/156 (33%), Gaps = 12/156 (7%)
Query: 330 TQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQA 389
T+ P G + P L S S + S S+ SD P + P+ S
Sbjct: 1000 TRTAPPTPSPGPSASPGPPGPALTSDSSRELTPHSALTSEATSDAPDTSPPTPDPASRTN 1059
Query: 390 P------------APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAP 437
P P + +P P PS P PT + L + + T PT P
Sbjct: 1060 PDLILTSPDFALSTPDSSVVPALTPEPSPTPLPTLPKELTSDPSTPSEVTSLSPTSEQVP 1119
Query: 438 VPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSP 473
++ T V S PS SP+P ++P
Sbjct: 1120 ESDTTPDLDTTPYSSTVSEYSRSPDPSPSPHPTTTP 1155
Score = 36.2 bits (82), Expect = 0.079
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 337 SPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTP-PCTTPSVYQFSLQAPAPLMA 395
SP +++ S ++P L ++ S S+VS S S S +P P TTP AP P+
Sbjct: 1112 SPTSEQVPESDTTPDLDTTPYS-STVSEYSRSPDPSPSPHPTTTPD----PTMAPDPITT 1166
Query: 396 GLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGV---EGTASLK 452
PT P P PTT+ T++ IP PT P + T + +
Sbjct: 1167 LNPTVTPHFPTTPHPTTTPHPTTITHST---MIPDPTTTPQPFTTITHSTMIPDPTTTPQ 1223
Query: 453 AVHHMSSPAIP-SASPNPLSSPHLYHKQHNGM 483
M P S +P+P ++PH H+ M
Sbjct: 1224 PFTTMQPTTTPHSTTPHPTTTPHPTTITHSTM 1255
Score = 33.9 bits (76), Expect = 0.39
Identities = 40/166 (24%), Positives = 59/166 (35%), Gaps = 19/166 (11%)
Query: 324 TCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTP--S 381
T T +P+ +T S P ++ +++ + + P TTP +
Sbjct: 1231 TTTPHSTTPHPTTTPHPTTITHSTMIPDPTTTPQPFTTMQPTTMPHPTTTPHPTTTPHPT 1290
Query: 382 VYQFSLQAPAPLMAGLPTALPMPSGKPQPTT---------SRTLIMTT---NNQTRFTIP 429
P P M PT P P+ P PTT S T ++TT +
Sbjct: 1291 TTPHPTTTPHPTMTPDPTTTPYPTTTPDPTTTPHPTTPDPSSTPVITTVSLPTSLGTELS 1350
Query: 430 PPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPL--SSP 473
PTL P + TA H S+ IP+ P+P SSP
Sbjct: 1351 SPTLAPTVKPSLHPQLTFTA---PAPHTSTSQIPTLEPSPALESSP 1393
Score = 32.0 bits (71), Expect = 1.5
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 376 PCTTP-SVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLG 434
P TTP S P P T +P P+ PQP T+ + T T P PT
Sbjct: 1230 PTTTPHSTTPHPTTTPHPTTITHSTMIPDPTTTPQPFTT---MQPTTMPHPTTTPHPT-- 1284
Query: 435 VAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPH 474
P P T ++ P+ +P+P ++PH
Sbjct: 1285 TTPHPTTTPHPTTTPHPTMTPDPTTTPYPTTTPDPTTTPH 1324
Score = 30.8 bits (68), Expect = 3.3
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 361 SVSSLSGSDVDSDT-PPCTTPSVY-QFSLQAPAP--LMAGLPTALPMPSGKPQPTTSRTL 416
S+ + G+++ S T P PS++ Q + APAP + +PT P P+ + P+ S T
Sbjct: 1340 SLPTSLGTELSSPTLAPTVKPSLHPQLTFTAPAPHTSTSQIPTLEPSPALESSPSRSSTA 1399
Query: 417 IMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLY 476
T PP + P H S + + SP+PL SP +
Sbjct: 1400 TSMDPLSTEDFKPPRSQSPNLTP------------PPTHTPHSASDLTVSPDPLLSPTAH 1447
Query: 477 HKQH 480
H
Sbjct: 1448 PLDH 1451
>gi|33186895 selenoprotein V [Homo sapiens]
Length = 346
Score = 38.5 bits (88), Expect = 0.016
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 26/174 (14%)
Query: 308 PSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASS-VSSLS 366
P+P +R R +T T R P +P R + +P L S + S V + +
Sbjct: 8 PAPS-SARTSTSVRASTPTRTPTPLRTP-TPVRTRTPIRTLTPVLTPSPAGTSPLVLTPA 65
Query: 367 GSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMP----SGKPQPTTSRTLIMTTNN 422
+ + + P TP++ + P P A +PT +P P + P PT +RTL
Sbjct: 66 PAQIPTLVP---TPALARIPRLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTL------ 116
Query: 423 QTRFTIPPPTLGVAPVPCR-QAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHL 475
PP AP P + AG+ A+L + +PA+P P P +P L
Sbjct: 117 ------TPPVRVPAPAPAQLLAGIR--AALPVLDSYLAPALP-LDPPPEPAPEL 161
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 38.1 bits (87), Expect = 0.021
Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 2/149 (1%)
Query: 309 SPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGS 368
SP S ++ + + + S + S SS SS SS+SS SS S S
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Query: 369 DVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTI 428
+ C++ + A A LPT +GK +P+ T Q +
Sbjct: 2671 STTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTPAPQPQAPP 2730
Query: 429 PPPTLGVAPVPCRQAGVEGTASLKAVHHM 457
P PT + P QAG + + H+
Sbjct: 2731 PQPTQPLQPK--AQAGAKSRPKKREGVHL 2757
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 37.7 bits (86), Expect = 0.027
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 348 SSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGK 407
++P L SS + S SG+ PP + +L PL LP A P PS
Sbjct: 292 AAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAP 351
Query: 408 PQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASP 467
P T + T +Q PP++ P+ ++ ++ H ++SP++ A P
Sbjct: 352 PSLQTLPSPPATPPSQA-----PPSMTTPPMQA-PPSLQTIPPIQVPHSLTSPSL-QAPP 404
Query: 468 NPLS 471
+PL+
Sbjct: 405 SPLA 408
Score = 37.7 bits (86), Expect = 0.027
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 26/151 (17%)
Query: 344 TLSLSSPQLLSSGSSAS-----SVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGL- 397
T SL SP L ++ S + + +SL+ + TPP + P SL A PL L
Sbjct: 415 TTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPPLQTSLS 474
Query: 398 PTALPMPS-------------GKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAG 444
P P+ S P + ++ +T+ ++ PP+L P
Sbjct: 475 PAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPP 534
Query: 445 VEGTASLKAVHHMSSPAIPSASPNPLSSPHL 475
+E SL + P + +AS PL++PHL
Sbjct: 535 LENLPSL------APPPLQTASA-PLTTPHL 558
Score = 34.7 bits (78), Expect = 0.23
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 346 SLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPS 405
SL +P + ++ SL+ + + + P TTP + AP PL A P P
Sbjct: 522 SLQTPPASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAP-----PSPL 576
Query: 406 GKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS--LKAVHHMSSPAIP 463
P P T ++ PP G+ P + A+ + +P P
Sbjct: 577 TTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSP 636
Query: 464 SASP--NPLSSP 473
ASP +PL++P
Sbjct: 637 PASPPLSPLATP 648
Score = 31.2 bits (69), Expect = 2.5
Identities = 43/150 (28%), Positives = 58/150 (38%), Gaps = 11/150 (7%)
Query: 329 QTQNREPESPYGQRLTLS-LSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPS-VYQFS 386
QT SP LT+ L + L+S S + +SSL PP T S + S
Sbjct: 470 QTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLI-------MPPLETQSSLAPPS 522
Query: 387 LQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPP-TLGVAPVPCRQAGV 445
LQ P P P +PS P P + + +TT + P P L P P
Sbjct: 523 LQTP-PASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPP 581
Query: 446 EGTASLKAVHHMSSPAIPSASPNPLSSPHL 475
E +S+ + PA+ S L SP L
Sbjct: 582 ETPSSIATPPPQAPPALASPPLQGLPSPPL 611
>gi|219802034 nuclear factor related to kappaB binding protein
isoform 1 [Homo sapiens]
Length = 1299
Score = 37.7 bits (86), Expect = 0.027
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 17/160 (10%)
Query: 323 ATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSV 382
A + ++P+ P + + SS ++LSSG S S SLS DS PP V
Sbjct: 668 AAAKARKALQQKPKPPSKVKSSSKESSIKVLSSGPSEQSQMSLS----DSSMPPTPVTPV 723
Query: 383 YQFSLQAPA-----PLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRF--TIPPPTLGV 435
+ PA P ++ + + P +P ++S L++++ + P +
Sbjct: 724 TPTTPALPAIPISPPPVSAVNKSGPSTVSEPAKSSSGVLLVSSPTMPHLGTMLSPASSQT 783
Query: 436 APVP------CRQAGVEGTASLKAVHHMSSPAIPSASPNP 469
AP +G G + ++ V S PA+P S P
Sbjct: 784 APSSQAAARVVSHSGSAGLSQVRVVAQPSLPAVPQQSGGP 823
>gi|23346420 nuclear factor related to kappaB binding protein
isoform 2 [Homo sapiens]
Length = 1324
Score = 37.7 bits (86), Expect = 0.027
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 17/160 (10%)
Query: 323 ATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSV 382
A + ++P+ P + + SS ++LSSG S S SLS DS PP V
Sbjct: 693 AAAKARKALQQKPKPPSKVKSSSKESSIKVLSSGPSEQSQMSLS----DSSMPPTPVTPV 748
Query: 383 YQFSLQAPA-----PLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRF--TIPPPTLGV 435
+ PA P ++ + + P +P ++S L++++ + P +
Sbjct: 749 TPTTPALPAIPISPPPVSAVNKSGPSTVSEPAKSSSGVLLVSSPTMPHLGTMLSPASSQT 808
Query: 436 APVP------CRQAGVEGTASLKAVHHMSSPAIPSASPNP 469
AP +G G + ++ V S PA+P S P
Sbjct: 809 APSSQAAARVVSHSGSAGLSQVRVVAQPSLPAVPQQSGGP 848
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 37.7 bits (86), Expect = 0.027
Identities = 39/153 (25%), Positives = 45/153 (29%), Gaps = 18/153 (11%)
Query: 366 SGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTR 425
S S PP T P+ P P P P G P PT + + TT Q
Sbjct: 123 SAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAG 182
Query: 426 FTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKL 485
PPP P P + G P P P P K G L
Sbjct: 183 GPPPPPAAVPGPGPGPKQG-------------PGPGGPKGGKMP-GGP----KPGGGPGL 224
Query: 486 SMKGSHGHTQGGGYSSVGSGGVRPPVGNRGHHQ 518
S G H G G P ++ HHQ
Sbjct: 225 STPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQ 257
>gi|11641239 hypothetical protein LOC53838 [Homo sapiens]
Length = 449
Score = 37.7 bits (86), Expect = 0.027
Identities = 47/174 (27%), Positives = 61/174 (35%), Gaps = 29/174 (16%)
Query: 344 TLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPM 403
T + SSP S S + S V P P + Q S+ P T PM
Sbjct: 220 TANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQAQGP-ISQVSVDQPVVNTTNKST--PM 276
Query: 404 PSGK-PQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAI 462
PS P+P + T++ TT Q R PT PVP H P +
Sbjct: 277 PSNTTPEPAPTPTVVTTTKAQAR----EPTASPVPVP---------------HTSPIPEM 317
Query: 463 PSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQG-GGYSSVG-----SGGVRPP 510
+ SP SP Y ++ G S T+ G S G SGG + P
Sbjct: 318 EAMSPTTQPSPMPYTQRAAGPGTSQAPEQVETEATPGTDSTGPTPRSSGGTKMP 371
Score = 33.9 bits (76), Expect = 0.39
Identities = 34/154 (22%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 322 IATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPS 381
+ T + +T EP + G ++ +P ++S ++A+S+++ + S + + P T S
Sbjct: 79 VTTEDTSRTDVSEPATSGGAADGVTSIAPTAVASSTTAASITTAASSMTVASSAPTTAAS 138
Query: 382 VYQFSLQAPAPLMAGLPTA--LPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVP 439
+ AP + + A PM P PT++ T T + T P + +A VP
Sbjct: 139 STTVASIAPTTAASSMTAASSTPMTLALPAPTSTST--GRTPSTTATGHPSLSTALAQVP 196
Query: 440 CRQAGVEGTASLKAVHHMSSPAIPSA-SPNPLSS 472
+ + + TA+L + + +A + +P+S+
Sbjct: 197 -KSSALPRTATLATLATRAQTVATTANTSSPMST 229
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 37.7 bits (86), Expect = 0.027
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 374 TPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTL 433
TPP TP + S P P A P A+ PS K PT T T +++ T P
Sbjct: 1311 TPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPAT---TPSSKGGPTTPSSKE 1367
Query: 434 GVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLS 471
G P P +G ++ PAIPS +P S
Sbjct: 1368 GPTP-PAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTS 1404
Score = 33.9 bits (76), Expect = 0.39
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 10/136 (7%)
Query: 335 PESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLM 394
P L+++ SSP+ + + + + S S + TPP TP + P+P
Sbjct: 903 PAPKQAPALSMTSSSPKKARATPAPKGIPA-SPSPKGAPTPPAATPPSPKGGPATPSPKW 961
Query: 395 AGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVA-PVPCRQAGVEGTASLKA 453
A P A PS K P T T T P P G A P P +G + A
Sbjct: 962 APTPPAATPPSPKGGPATPSPKGAPT--PPAATPPSPKGGPATPSP------KGAPTPPA 1013
Query: 454 VHHMSSPAIPSASPNP 469
V S P+A+P P
Sbjct: 1014 VTPPSPKGSPAATPFP 1029
Score = 33.1 bits (74), Expect = 0.66
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 28/107 (26%)
Query: 368 SDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFT 427
S ++ +PP TPS Y+ AP+P +P A+ PS K PT T
Sbjct: 1575 SSKEASSPPAVTPSTYK---GAPSPKELLIPPAVTSPSPKEAPTPPAV-----------T 1620
Query: 428 IPPPTLGVA-PVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSP 473
P P G A P P +GT + S P PS+ + +SP
Sbjct: 1621 PPSPEKGPATPAP------KGTPT-------SPPVTPSSLKDSPTSP 1654
Score = 30.8 bits (68), Expect = 3.3
Identities = 43/149 (28%), Positives = 55/149 (36%), Gaps = 25/149 (16%)
Query: 335 PESPYGQRLTLSLSSPQLLSSGSSASSVSSLSG----SDVDSDTPPCTTPSVYQFSLQA- 389
P SP G T SP+ + +A+ S G S + TPP TP + S A
Sbjct: 970 PPSPKGGPAT---PSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAAT 1026
Query: 390 PAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTA 449
P P A P A PS K P T PT A +P + G T
Sbjct: 1027 PFPKGASTPPAATPPSPKGSPAA-----------TPLPKGAPTTPAATLPSPKGG-PATP 1074
Query: 450 SLKAVHHMSSPAIPS-----ASPNPLSSP 473
SLK + PS A+P+P +P
Sbjct: 1075 SLKGAPTPPAATPPSPKGGPATPSPKGAP 1103
Score = 30.8 bits (68), Expect = 3.3
Identities = 46/185 (24%), Positives = 61/185 (32%), Gaps = 39/185 (21%)
Query: 335 PESPYGQRLTLSLSSPQLLSSGSSASSVSSLSG----SDVDSDTPPCTTPSVYQFSLQAP 390
P SP G L+ SP+ + +A+ S G S + T P TP + L P
Sbjct: 1179 PPSPKGG---LATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP 1235
Query: 391 APLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTAS 450
+P A A PS K P T PPP P ++G +
Sbjct: 1236 SPKGAPTTPAATPPSPKGGPAT----------------PPPKGAPTPPAATPPSLKGGLA 1279
Query: 451 LKAVHHMSSPAI---PSASPNPLSSPHLYHKQHNGMKLSMKGSHGHTQGGGYSSVGSGGV 507
+PA+ PS P +SP KG+ S GS G
Sbjct: 1280 TPPHKGAPNPAVVTPPSPKGGPATSP-------------PKGAPTPPAATPPSPKGSPGT 1326
Query: 508 RPPVG 512
PP G
Sbjct: 1327 PPPKG 1331
Score = 30.8 bits (68), Expect = 3.3
Identities = 42/161 (26%), Positives = 56/161 (34%), Gaps = 18/161 (11%)
Query: 335 PESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVD----SDTPPCTTPSVYQFSLQAP 390
P SP G L+ SP+ + +A+ S G + TPP TP + L P
Sbjct: 1225 PPSPKGG---LATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATP 1281
Query: 391 APLMAGLPTALPMPSGKPQPTTSRTLIMTT-------NNQTRFTIPPPTLGVAPVPCRQA 443
A P + PS K P TS T + + PPP P
Sbjct: 1282 PHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPP 1341
Query: 444 GVEGTASLKAVHHMS--SPAIPSASPNPLSSPHLYHKQHNG 482
+GT +L A S P PS+ P +P H G
Sbjct: 1342 SPKGTPTLPATTPSSKGGPTTPSSKEGP--TPPAATPSHKG 1380
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 37.0 bits (84), Expect = 0.046
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 14/134 (10%)
Query: 348 SSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLP----TALPM 403
++P ++ S + ++ + + +PP TTP S P P T P
Sbjct: 1475 TTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPP 1534
Query: 404 PSGKPQPTTSRTLI----MTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSS 459
P+ P P T+ + TT T PPPT P P T S S
Sbjct: 1535 PTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT------TPSPPTTTTPSP 1588
Query: 460 PAIPSASPNPLSSP 473
P I + +P P ++P
Sbjct: 1589 PTITTTTPPPTTTP 1602
Score = 36.6 bits (83), Expect = 0.060
Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 375 PPCTTPSVYQFSLQAPAPLMAGLP----TALPMPSGKPQPTTSRTLIMTTN----NQTRF 426
PP TTPS + P P P T P P+ P P T+ TT T
Sbjct: 1433 PPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTT 1492
Query: 427 TIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSP 473
T PP T P T +L S P + +P P ++P
Sbjct: 1493 TPPPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTP 1539
Score = 34.7 bits (78), Expect = 0.23
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 375 PPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTI---PPP 431
PP TTPS + P P P PS P TT+ T TT + T PP
Sbjct: 1636 PPTTTPSPPPTTTTTPPPTTTPSPPTTTTPS--PPITTTTTPPPTTTPSSPITTTPSPPT 1693
Query: 432 TLGVAPVPCR--QAGVEGTASLKAVHHMSSPAIPSASPNPLSSP 473
T P P + + T + + S P +P+P ++P
Sbjct: 1694 TTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTP 1737
Score = 34.3 bits (77), Expect = 0.30
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 370 VDSDTPPCTTPSVYQFSLQAPAPLMAGLP----TALPMPSGKPQPTTSRTLIMTTNNQTR 425
+ + +PP TTPS S P P T P P+ P P + T TT T
Sbjct: 1396 ITTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTT---TTPPPTT 1452
Query: 426 FTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSP 473
PP + P P T S P + +P P ++P
Sbjct: 1453 TPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTP 1500
Score = 33.1 bits (74), Expect = 0.66
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 17/99 (17%)
Query: 375 PPCTTPSVYQFSLQAPAPLMAGLP----TALPMPSGKPQPTTSRTLIMTTNNQTRFTIPP 430
PP TTPS + P P P T P P+ P P S T T PP
Sbjct: 1417 PPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTT-----------TTPP 1465
Query: 431 PTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNP 469
PT +P + T S + P P+ +P+P
Sbjct: 1466 PTTTPSPPTTTPSPPTTTPSPPTTTTTTPP--PTTTPSP 1502
Score = 32.0 bits (71), Expect = 1.5
Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 10/110 (9%)
Query: 374 TPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTN----------NQ 423
TPP +T ++ + +P P P PS T S I TT
Sbjct: 1548 TPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTT 1607
Query: 424 TRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSP 473
T T PP T P T +L S P + +P P ++P
Sbjct: 1608 TTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP 1657
Score = 31.6 bits (70), Expect = 1.9
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 375 PPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQ---TRFTIPPP 431
PP TTPS + P P P P + PT++ TL TT T T PPP
Sbjct: 1597 PPTTTPSPPTTTTTTPPPTTTPSP---PTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPP 1653
Query: 432 TLGVAP 437
T +P
Sbjct: 1654 TTTPSP 1659
Score = 30.4 bits (67), Expect = 4.3
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 8/137 (5%)
Query: 344 TLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLP----T 399
T++ ++P ++ S ++ ++ + + +PP TTP S P P T
Sbjct: 1590 TITTTTPPPTTTPSPPTTTTT-TPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTT 1648
Query: 400 ALPMPSGKPQPTTSRT---LIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHH 456
P P+ P P T+ T I TT T P + P P + +
Sbjct: 1649 TTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSP 1708
Query: 457 MSSPAIPSASPNPLSSP 473
+++ PS++ P P
Sbjct: 1709 ITTTTTPSSTTTPSPPP 1725
Score = 29.6 bits (65), Expect = 7.3
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 344 TLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPM 403
T + SSP +++ S + + + S + + P TT + S P+P + T P
Sbjct: 1678 TTTPSSP--ITTTPSPPTTTMTTPSPTTTPSSPITTTTTPS-STTTPSPPPTTMTTPSPT 1734
Query: 404 PSGKPQPTTSRTLIMTTNNQTRFTIP-PPTL 433
+ P TT TL TT + T P PP++
Sbjct: 1735 TTPSPPTTTMTTLPPTTTSSPLTTTPLPPSI 1765
Score = 29.6 bits (65), Expect = 7.3
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 12/151 (7%)
Query: 324 TCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVY 383
T G QT P + T + +P +G+ + + ++ + + TP T
Sbjct: 4143 TPTGTQTPTTTPIT------TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTG 4196
Query: 384 QFSLQAPAPLMAGLPTALPMP-SGKPQPTTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQ 442
+ + AP+ A L T+ P P S PQ + S + +T + T+PP + P
Sbjct: 4197 PPTHTSTAPI-AELTTSNPPPESSTPQTSRSTSSPLTESTTLLSTLPPAIEMTSTAPPST 4255
Query: 443 AGVEGTASLKAVHHMSSPAIPSASPNPLSSP 473
T S H +S P PS + +P +P
Sbjct: 4256 PTAPTTTS--GGHTLSPP--PSTTTSPPGTP 4282
Score = 29.3 bits (64), Expect = 9.6
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 25/123 (20%)
Query: 363 SSLSGSDVDSDTPPCTTPSVYQFSLQ-APAPLMAGLPTALPM-----------PSGKPQP 410
++++ + ++ TPP TTP ++ P P PT P+ P+G P
Sbjct: 1883 TTMTTTTTENPTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTP 1942
Query: 411 TTSRTLIMTTNNQTRFTIPPPTLGVAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPL 470
TT+ TT T P PT P T + ++ P+ + P
Sbjct: 1943 TTTPITTTTTVTPT----PTPTGTQTPT---------TTPITTTTTVTPTPTPTGTQTPT 1989
Query: 471 SSP 473
++P
Sbjct: 1990 TTP 1992
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 37.0 bits (84), Expect = 0.046
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 375 PPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGKPQPTTSRTLIMTTNNQTRFTIPPPTLG 434
PP PSV P P +P+A P+PS +P P TT N ++P G
Sbjct: 667 PPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARPGPP-------TTANHLGLSVP----G 715
Query: 435 VAPVPCRQAGVEGTASLKAVHHMSSPAIPSASPNPLSSP 473
+ VP R + G + +A + PS +P P P
Sbjct: 716 LVSVPPRL--LPGPENHRAGSNEDPILAPSGTPPPTIPP 752
>gi|13376146 zinc finger and BTB domain containing 3 [Homo sapiens]
Length = 574
Score = 36.6 bits (83), Expect = 0.060
Identities = 36/131 (27%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Query: 297 WIKEKWGSKAHPSPGM---DSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQ-- 351
W K +W A PSP + D T G + +P+ +SL+SP
Sbjct: 216 WGKGEWKGSAAPSPTVRPPDEPPMSSGADTTQPGMEVDAPHLRAPHPPVADVSLASPSSS 275
Query: 352 -------LLSSGSSASSVSSLSGSDVDSDTPPCTTPS-----VYQFSLQAPAPLMAGLPT 399
SSG SA S+ L DV ++ P + F A AP A P
Sbjct: 276 TETIPTNYFSSGISAVSLEPLPSLDVGPESLRVVEPKDPGGPLQGFYPPASAPTSAPAPV 335
Query: 400 ALPMPSGKPQP 410
+ P+PS P P
Sbjct: 336 SAPVPSQAPAP 346
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 36.2 bits (82), Expect = 0.079
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 7/130 (5%)
Query: 348 SSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMPSGK 407
SSP L + S+ + L S PPC P V + P PL+ +P P S
Sbjct: 746 SSPALQTPSLSSGQLPPLLIPTDPSSPPPC--PPVLTVATPPP-PLLPTVPLPAPSSSAS 802
Query: 408 PQPTTSRTLIMTTNNQTRF---TIPPPTLGVAPV-PCRQAGVEGTASLKAVHHMSSPAIP 463
P P S T + T+ P + PV P A G +L + SS +
Sbjct: 803 PHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSS 862
Query: 464 SASPNPLSSP 473
+S + SSP
Sbjct: 863 FSSSSSSSSP 872
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,591,409
Number of Sequences: 37866
Number of extensions: 1195582
Number of successful extensions: 5994
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 5192
Number of HSP's gapped (non-prelim): 896
length of query: 542
length of database: 18,247,518
effective HSP length: 107
effective length of query: 435
effective length of database: 14,195,856
effective search space: 6175197360
effective search space used: 6175197360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.