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Search of human proteins with 5902054
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902054 ring finger protein 5 [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902054 ring finger protein 5 [Homo sapiens] 392 e-110
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 229 1e-60
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 229 1e-60
gi|209529683 ring finger protein 185 isoform 2 [Homo sapiens] 97 1e-20
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 52 2e-07
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 52 2e-07
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ... 51 5e-07
gi|21071052 helicase-like transcription factor [Homo sapiens] 49 2e-06
gi|21071054 helicase-like transcription factor [Homo sapiens] 49 2e-06
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 49 2e-06
gi|8923898 zinc finger protein 313 [Homo sapiens] 48 5e-06
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 47 7e-06
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 47 7e-06
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 47 7e-06
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 47 9e-06
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 47 9e-06
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 46 2e-05
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 46 2e-05
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 46 2e-05
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 46 2e-05
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 46 2e-05
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 46 2e-05
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 45 3e-05
gi|30520320 ring finger protein 166 [Homo sapiens] 45 4e-05
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 45 4e-05
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 45 4e-05
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 44 1e-04
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 43 1e-04
gi|34452681 ring finger protein 10 [Homo sapiens] 43 1e-04
gi|20162564 tripartite motif-containing 40 [Homo sapiens] 43 2e-04
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 392 bits (1007), Expect = e-110
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MAAAEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPE 60
MAAAEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPE
Sbjct: 1 MAAAEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPE 60
Query: 61 RQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGF 120
RQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGF
Sbjct: 61 RQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGF 120
Query: 121 HFSFGVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLLSI 180
HFSFGVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLLSI
Sbjct: 121 HFSFGVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLLSI 180
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 229 bits (583), Expect = 1e-60
Identities = 109/174 (62%), Positives = 127/174 (72%), Gaps = 5/174 (2%)
Query: 9 GGPEGPNR---ERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECP 65
GGP G + E GG +TFECNICL+TA++AV+S+CGHL+CWPCLHQWLETRP RQ CP
Sbjct: 18 GGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 77
Query: 66 VCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFG-DTGGFHFSF 124
VCKAGISR+KV+PLYGRGS QDPR KTPPRPQGQRP PE+RGGFQ FG GGF SF
Sbjct: 78 VCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSF 137
Query: 125 GVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLL 178
G+GAFPFG F T FN ++ R V + + LFLF+A+ FWLL
Sbjct: 138 GIGAFPFGIFATAFNINDG-RPPPAVPGTPQYVDEQFLSRLFLFVALVIMFWLL 190
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 229 bits (583), Expect = 1e-60
Identities = 109/174 (62%), Positives = 127/174 (72%), Gaps = 5/174 (2%)
Query: 9 GGPEGPNR---ERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECP 65
GGP G + E GG +TFECNICL+TA++AV+S+CGHL+CWPCLHQWLETRP RQ CP
Sbjct: 18 GGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 77
Query: 66 VCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFG-DTGGFHFSF 124
VCKAGISR+KV+PLYGRGS QDPR KTPPRPQGQRP PE+RGGFQ FG GGF SF
Sbjct: 78 VCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSF 137
Query: 125 GVGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLL 178
G+GAFPFG F T FN ++ R V + + LFLF+A+ FWLL
Sbjct: 138 GIGAFPFGIFATAFNINDG-RPPPAVPGTPQYVDEQFLSRLFLFVALVIMFWLL 190
>gi|209529683 ring finger protein 185 isoform 2 [Homo sapiens]
Length = 136
Score = 96.7 bits (239), Expect = 1e-20
Identities = 61/173 (35%), Positives = 78/173 (45%), Gaps = 59/173 (34%)
Query: 9 GGPEGPNR---ERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECP 65
GGP G + E GG +TFECNICL+TA++AV+S+CGHL+CWPCLHQ +
Sbjct: 18 GGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQGFQG-------- 69
Query: 66 VCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFG 125
+G G GGFQ SFG
Sbjct: 70 --------------FGFGD------------------------GGFQ---------MSFG 82
Query: 126 VGAFPFGFFTTVFNAHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIFFFFWLL 178
+GAFPFG F T FN ++ R V + + LFLF+A+ FWLL
Sbjct: 83 IGAFPFGIFATAFNINDG-RPPPAVPGTPQYVDEQFLSRLFLFVALVIMFWLL 134
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 52.4 bits (124), Expect = 2e-07
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 79
C +CLE R + CGHL+CW C+ W + + ECP+C+ +K++ L
Sbjct: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSS---KAECPLCREKFPPQKLIYL 342
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 52.4 bits (124), Expect = 2e-07
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 79
C +CLE R + CGHL+CW C+ W + + ECP+C+ +K++ L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSS---KAECPLCREKFPPQKLIYL 322
>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
sequence [Homo sapiens]
Length = 906
Score = 51.2 bits (121), Expect = 5e-07
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 22 GATFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLY 80
G+TF+ C IC E ++ + CGHL C CL W E+ E Q CP C+ I + + +
Sbjct: 375 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV- 431
Query: 81 GRGSQKPQDPRLKTPPRPQGQRPAP 105
P DPR QG AP
Sbjct: 432 -----DPFDPRGSGSLLRQGAEGAP 451
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 49.3 bits (116), Expect = 2e-06
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 21 AGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL- 79
+G+ EC ICL++ V++ C H++C PC+ Q ++ +CP+C+ I + ++
Sbjct: 754 SGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECP 813
Query: 80 ---YGRGSQKPQD 89
R S+K D
Sbjct: 814 PEELARDSEKKSD 826
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 49.3 bits (116), Expect = 2e-06
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 21 AGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL- 79
+G+ EC ICL++ V++ C H++C PC+ Q ++ +CP+C+ I + ++
Sbjct: 754 SGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECP 813
Query: 80 ---YGRGSQKPQD 89
R S+K D
Sbjct: 814 PEELARDSEKKSD 826
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 48.9 bits (115), Expect = 2e-06
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQK 86
C+ICL+ R+ V CGH++C C R CP+CK +E + P++ S
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVWQLASLV 75
Query: 87 PQDPRLKTPPRPQGQRPAPESR 108
RLK +G++P +R
Sbjct: 76 ENIERLKV---DKGRQPGEVTR 94
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 47.8 bits (112), Expect = 5e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 1 MAAAEEEDGGPE---GPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLET 57
MAA + + GG GP E G F C +CLE + V CGH++C CL + L
Sbjct: 1 MAAQQRDCGGAAQLAGPAAEADPLGR-FTCPVCLEVYEKPVQVPCGHVFCSACLQECL-- 57
Query: 58 RPERQECPVCKAGIS 72
+P++ C VC++ ++
Sbjct: 58 KPKKPVCGVCRSALA 72
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 47.4 bits (111), Expect = 7e-06
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 22 GATFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLY 80
G+TF+ C IC E ++ + CGHL C CL W E+ + Q CP C+ I + + +
Sbjct: 367 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQES--DGQGCPFCRCEIKGTEPIIV- 423
Query: 81 GRGSQKPQDPR 91
P DPR
Sbjct: 424 -----DPFDPR 429
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 47.4 bits (111), Expect = 7e-06
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 20/109 (18%)
Query: 23 ATFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLY- 80
+TFE C IC E+ ++ + CGHL C CL W + + Q CP C+ I + V +Y
Sbjct: 300 STFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS--DSQTCPFCRCEIKGWEAVSIYQ 357
Query: 81 --------GRGSQKPQDPR--------LKTPPRPQGQRPAPESRGGFQP 113
G+ Q+ R L PP P P QP
Sbjct: 358 FHGQATAEDSGNSSDQEGRELELGQVPLSAPPLPPRPDLPPRKPRNAQP 406
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 47.4 bits (111), Expect = 7e-06
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 20/109 (18%)
Query: 23 ATFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLY- 80
+TFE C IC E+ ++ + CGHL C CL W + + Q CP C+ I + V +Y
Sbjct: 346 STFELCKICAESNKDVKIEPCGHLLCSCCLAAWQHS--DSQTCPFCRCEIKGWEAVSIYQ 403
Query: 81 --------GRGSQKPQDPR--------LKTPPRPQGQRPAPESRGGFQP 113
G+ Q+ R L PP P P QP
Sbjct: 404 FHGQATAEDSGNSSDQEGRELELGQVPLSAPPLPPRPDLPPRKPRNAQP 452
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo
sapiens]
Length = 488
Score = 47.0 bits (110), Expect = 9e-06
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCK 68
C++CLE +E V+ CGH +C C+ +W E CPVC+
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR 70
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo
sapiens]
Length = 518
Score = 47.0 bits (110), Expect = 9e-06
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCK 68
C++CLE +E V+ CGH +C C+ +W E CPVC+
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR 70
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo
sapiens]
Length = 1884
Score = 45.8 bits (107), Expect = 2e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKV 76
EC ICLE +E V + C H++C C+ + L + +CP+CK I++ +
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo
sapiens]
Length = 699
Score = 45.8 bits (107), Expect = 2e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKV 76
EC ICLE +E V + C H++C C+ + L + +CP+CK I++ +
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo
sapiens]
Length = 759
Score = 45.8 bits (107), Expect = 2e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKV 76
EC ICLE +E V + C H++C C+ + L + +CP+CK I++ +
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 45.8 bits (107), Expect = 2e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKV 76
EC ICLE +E V + C H++C C+ + L + +CP+CK I++ +
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 45.8 bits (107), Expect = 2e-05
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVC 67
F C IC + EA ++ CGH +C+ C+HQ LE + CP C
Sbjct: 134 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLE---DNNRCPKC 173
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 45.8 bits (107), Expect = 2e-05
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVC 67
F C IC + EA ++ CGH +C+ C+HQ LE + CP C
Sbjct: 134 FVCPICFDMIEEAYMTKCGHSFCYKCIHQSLE---DNNRCPKC 173
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 45.1 bits (105), Expect = 3e-05
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGIS 72
FEC +C+ E V + CGH +C CL + L+ P CP+CK +S
Sbjct: 447 FECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAP---HCPLCKDKLS 491
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 44.7 bits (104), Expect = 4e-05
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 1 MAAAEEEDGGPEGPNRERGGAGATFECNICLET-AREAVVSVCGHLYCWPCLHQWLETRP 59
+ A+ ++ P GP G A + C ICLE R + CGH +C CL L+
Sbjct: 7 LVASAQQRQPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQV-- 64
Query: 60 ERQECPVCKAGISREKV 76
CP+C+ +KV
Sbjct: 65 PSPLCPLCRLPFDPKKV 81
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 44.7 bits (104), Expect = 4e-05
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISR 73
EC +C+ E V + CGH +C CL + L+ +CP+CK G+S+
Sbjct: 466 ECALCMRLFYEPVTTPCGHTFCLKCLERCLD---HNAKCPLCKDGLSQ 510
Score = 31.6 bits (70), Expect = 0.38
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGS 84
F+C C + V CGH +C CL + R + C +C +S V RG+
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLER---GRAADRRCALCGVKLSALMVATGRARGA 212
Query: 85 QKPQDPRLKTPPRPQGQRPAPESR 108
R GQ+P P R
Sbjct: 213 ------------RRAGQQPPPPLR 224
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 44.7 bits (104), Expect = 4e-05
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISR 73
EC +C+ E V + CGH +C CL + L+ +CP+CK G+S+
Sbjct: 425 ECALCMRLFYEPVTTPCGHTFCLKCLERCLD---HNAKCPLCKDGLSQ 469
Score = 31.6 bits (70), Expect = 0.38
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGS 84
F+C C + V CGH +C CL + R + C +C +S V RG+
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLER---GRAADRRCALCGVKLSALMVATGRARGA 212
Query: 85 QKPQDPRLKTPPRPQGQRPAPESR 108
R GQ+P P R
Sbjct: 213 ------------RRAGQQPPPPLR 224
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 43.5 bits (101), Expect = 1e-04
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 25 FECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGI 71
FEC++C+ E V + CGH +C CL + L+ P CP+CK +
Sbjct: 477 FECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAP---YCPLCKESL 520
Score = 36.6 bits (83), Expect = 0.012
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 19 GGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCK 68
GGAG C C E V CGH YC CL + L R C +C+
Sbjct: 115 GGAGGLLRCLGCRGFLSEPVTVPCGHSYCRRCLRRELRAR-----CRLCR 159
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 43.1 bits (100), Expect = 1e-04
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKA 69
C+ICLE +E V + CGH +C CL++ + CP C+A
Sbjct: 13 CSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRA 55
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 43.1 bits (100), Expect = 1e-04
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPER-QECPVCKAGISRE 74
C ICL A ++ CGH++CW C+ +L + +CP+C + + ++
Sbjct: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKK 273
>gi|20162564 tripartite motif-containing 40 [Homo sapiens]
Length = 229
Score = 42.7 bits (99), Expect = 2e-04
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQE--CPVCKAGISRE 74
C IC E+ +EAV + CGHL+C CL Q +E CP+C+ S E
Sbjct: 14 CPICQESLKEAVSTNCGHLFCRVCLTQHVEKASASGVFCCPLCRKPCSEE 63
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.143 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,483,798
Number of Sequences: 37866
Number of extensions: 534427
Number of successful extensions: 3063
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 2763
Number of HSP's gapped (non-prelim): 474
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.