Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 5902018
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5902018 tubulin polymerization promoting protein [Homo
sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5902018 tubulin polymerization promoting protein [Homo sapiens] 437 e-123
gi|56676377 tubulin polymerization-promoting protein family memb... 238 3e-63
gi|56676375 tubulin polymerization-promoting protein family memb... 238 3e-63
gi|226491350 tubulin polymerization-promoting protein family mem... 210 7e-55
gi|58218968 calmodulin 3 [Homo sapiens] 36 0.022
gi|4502549 calmodulin 2 [Homo sapiens] 36 0.022
gi|5901912 calmodulin 1 [Homo sapiens] 36 0.022
gi|4885111 calmodulin-like 3 [Homo sapiens] 33 0.25
gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens] 32 0.42
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 31 0.72
gi|239047414 slingshot 1 isoform 1 [Homo sapiens] 31 0.94
gi|239743317 PREDICTED: hypothetical protein XP_002342791 [Homo ... 30 1.2
gi|239508999 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens] 30 1.2
gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member... 30 1.2
gi|38158015 mastermind-like 3 [Homo sapiens] 30 1.6
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 30 2.1
gi|39930571 leucine rich repeat containing 56 [Homo sapiens] 29 2.7
gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform ... 29 2.7
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 29 2.7
gi|150170653 EF-hand calcium binding domain 4A [Homo sapiens] 29 2.7
gi|4557841 recombination activating gene 1 [Homo sapiens] 29 3.6
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 29 3.6
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 29 3.6
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 29 3.6
gi|28144916 lin-37 homolog [Homo sapiens] 29 3.6
gi|148762978 similar to CG15216-PA [Homo sapiens] 28 4.7
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 28 6.1
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 28 6.1
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 28 6.1
>gi|5902018 tubulin polymerization promoting protein [Homo sapiens]
Length = 219
Score = 437 bits (1124), Expect = e-123
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV 60
MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV
Sbjct: 1 MADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV 60
Query: 61 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL 120
HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL
Sbjct: 61 HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEAL 120
Query: 121 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF 180
EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF
Sbjct: 121 EELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERF 180
Query: 181 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK 219
DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK
Sbjct: 181 DPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQGGK 219
>gi|56676377 tubulin polymerization-promoting protein family member
3 [Homo sapiens]
Length = 176
Score = 238 bits (607), Expect = 3e-63
Identities = 113/174 (64%), Positives = 144/174 (82%)
Query: 43 AASPELSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSK 102
AAS +++ LEE+FR+FA+HGD +A+G+EM+GKNW+KLCKDC+V DG++VT TDVDIVFSK
Sbjct: 2 AASTDMAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSK 61
Query: 103 IKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPT 162
+KGKS R I +E+F++ALEELA KRFK KS EEA + +L+ GK P GVTKA +
Sbjct: 62 VKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGGA 121
Query: 163 VSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQ 216
V RLTDT+++TGSHKERFD SGKGKG AGR D++D+SGYVS YK+AGTYD KV+
Sbjct: 122 VDRLTDTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVK 175
>gi|56676375 tubulin polymerization-promoting protein family member
3 [Homo sapiens]
Length = 176
Score = 238 bits (607), Expect = 3e-63
Identities = 113/174 (64%), Positives = 144/174 (82%)
Query: 43 AASPELSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSK 102
AAS +++ LEE+FR+FA+HGD +A+G+EM+GKNW+KLCKDC+V DG++VT TDVDIVFSK
Sbjct: 2 AASTDMAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSK 61
Query: 103 IKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPT 162
+KGKS R I +E+F++ALEELA KRFK KS EEA + +L+ GK P GVTKA +
Sbjct: 62 VKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLVAGKEPANVGVTKAKTGGA 121
Query: 163 VSRLTDTTKFTGSHKERFDPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQ 216
V RLTDT+++TGSHKERFD SGKGKG AGR D++D+SGYVS YK+AGTYD KV+
Sbjct: 122 VDRLTDTSRYTGSHKERFDESGKGKGIAGRQDILDDSGYVSAYKNAGTYDAKVK 175
>gi|226491350 tubulin polymerization-promoting protein family member
2 [Homo sapiens]
Length = 170
Score = 210 bits (535), Expect = 7e-55
Identities = 98/168 (58%), Positives = 131/168 (77%)
Query: 49 SALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSC 108
S E+ F RFA G++ ++G EM+ KN+SKLCKDC ++DG+ VT TDVDIVFSK+K K+
Sbjct: 3 SEAEKTFHRFAAFGESSSSGTEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNA 62
Query: 109 RTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKAISSPTVSRLTD 168
RTITF+QF+EA++EL +KRFK KS +E + ++ L+EGK P +G TKA + V RLTD
Sbjct: 63 RTITFQQFKEAVKELGQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTD 122
Query: 169 TTKFTGSHKERFDPSGKGKGKAGRVDLVDESGYVSGYKHAGTYDQKVQ 216
T+K+TG+HKERFD SGKGKG AGR ++ D +GYVSGYK +GTYD+K +
Sbjct: 123 TSKYTGTHKERFDESGKGKGIAGREEMTDNTGYVSGYKGSGTYDKKTK 170
>gi|58218968 calmodulin 3 [Homo sapiens]
Length = 149
Score = 36.2 bits (82), Expect = 0.022
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 47 ELSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGK 106
+++ +EAF F GD T +E+ G L G+N T ++ + +++
Sbjct: 9 QIAEFKEAFSLFDKDGDGTITTKEL-GTVMRSL--------GQNPTEAELQDMINEVDAD 59
Query: 107 SCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLI--EGKAPIISGVTKAISSPTVS 164
TI F +F L +A+K KD SEE +RE R+ +G I + + + +
Sbjct: 60 GNGTIDFPEF---LTMMARK-MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 115
Query: 165 RLTD 168
+LTD
Sbjct: 116 KLTD 119
>gi|4502549 calmodulin 2 [Homo sapiens]
Length = 149
Score = 36.2 bits (82), Expect = 0.022
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 47 ELSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGK 106
+++ +EAF F GD T +E+ G L G+N T ++ + +++
Sbjct: 9 QIAEFKEAFSLFDKDGDGTITTKEL-GTVMRSL--------GQNPTEAELQDMINEVDAD 59
Query: 107 SCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLI--EGKAPIISGVTKAISSPTVS 164
TI F +F L +A+K KD SEE +RE R+ +G I + + + +
Sbjct: 60 GNGTIDFPEF---LTMMARK-MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 115
Query: 165 RLTD 168
+LTD
Sbjct: 116 KLTD 119
>gi|5901912 calmodulin 1 [Homo sapiens]
Length = 149
Score = 36.2 bits (82), Expect = 0.022
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 47 ELSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGK 106
+++ +EAF F GD T +E+ G L G+N T ++ + +++
Sbjct: 9 QIAEFKEAFSLFDKDGDGTITTKEL-GTVMRSL--------GQNPTEAELQDMINEVDAD 59
Query: 107 SCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLI--EGKAPIISGVTKAISSPTVS 164
TI F +F L +A+K KD SEE +RE R+ +G I + + + +
Sbjct: 60 GNGTIDFPEF---LTMMARK-MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 115
Query: 165 RLTD 168
+LTD
Sbjct: 116 KLTD 119
>gi|4885111 calmodulin-like 3 [Homo sapiens]
Length = 149
Score = 32.7 bits (73), Expect = 0.25
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 47 ELSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGK 106
+++ +EAF F GD T RE+ G L G+N T ++ + S+I
Sbjct: 9 QVTEFKEAFSLFDKDGDGCITTREL-GTVMRSL--------GQNPTEAELRDMMSEIDRD 59
Query: 107 SCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIE 145
T+ F +F L +A+K KD +EE +RE R+ +
Sbjct: 60 GNGTVDFPEF---LGMMARK-MKDTDNEEEIREAFRVFD 94
>gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens]
Length = 1012
Score = 32.0 bits (71), Expect = 0.42
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 99 VFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVRE 139
+ S IKG+ +T+E+ + LEE A K F + +E+ +E
Sbjct: 809 LLSNIKGRKITLLTYEEIERLLEEEAVKEFIEPEIDESFKE 849
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 31.2 bits (69), Expect = 0.72
Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 14/196 (7%)
Query: 13 RTPPKSPGDPSKDRAAK--RLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGRE 70
RT P+ PG P KD + SL E A + S + + + A + T +
Sbjct: 1123 RTLPQEPGKPQKDEVLRYPDRSLSPEDAESLSVLS--VPSPDTANQEPTPKSPCGLTEQY 1180
Query: 71 MHGKNWSKLC-KDCQVI---DGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKK 126
+H W ++ +D Q + + T +D+ ++ +S T+ F + EE+
Sbjct: 1181 LHKDRWPEVSPEDTQSLSLSEESPSKETSLDVSSKQLSPESLGTLQFGELNLGKEEMGHL 1240
Query: 127 RFKDKSSEE----AVREVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFDP 182
+ +S +V E H +P G T+ + ++ + K S P
Sbjct: 1241 MQAEDTSHHTAPMSVPEPHAAT--ASPPTDGTTRYSAQTDITDDSLDRKSPASSFSHSTP 1298
Query: 183 SGKGKGKAGRVDLVDE 198
SG GK G + DE
Sbjct: 1299 SGNGKYLPGAITSPDE 1314
>gi|239047414 slingshot 1 isoform 1 [Homo sapiens]
Length = 1049
Score = 30.8 bits (68), Expect = 0.94
Identities = 38/143 (26%), Positives = 52/143 (36%), Gaps = 24/143 (16%)
Query: 6 KPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAV----- 60
KPA PP P P+ R A ++ G G GAA P S LE + V
Sbjct: 703 KPASGPTEPPPFLP--PAGSRRA-----DTSGPGAGAALEPPASLLEPSRETPKVLPKSL 755
Query: 61 -----HGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQ 115
H D E+ K S KD + D+ ++FS K Q
Sbjct: 756 LLKNSHCDKNPPSTEVVIKEESSPKKDMK-------PAKDLRLLFSNESEKPTTNSYLMQ 808
Query: 116 FQEALEELAKKRFKDKSSEEAVR 138
QE++ +L K K ++E R
Sbjct: 809 HQESIIQLQKAGLVRKHTKELER 831
>gi|239743317 PREDICTED: hypothetical protein XP_002342791 [Homo
sapiens]
Length = 117
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 20 GDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGR-EMHGKNWSK 78
G PSK A ++ ++ +G +G++ +P LS + A + ATGR HG++
Sbjct: 35 GKPSKPSAQRQPTVGPDGDRDGSSQAPNLSRGQAWRASLASPQNTSATGRVTCHGQSTWP 94
Query: 79 LCK 81
LC+
Sbjct: 95 LCR 97
>gi|239508999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 20 GDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGR-EMHGKNWSK 78
G PSK A ++ ++ +G +G++ +P LS + A + ATGR HG++
Sbjct: 35 GKPSKPSAQRQPTVGPDGDRDGSSQAPNLSRGQAWRASLASPQNTSATGRVTCHGQSTWP 94
Query: 79 LCK 81
LC+
Sbjct: 95 LCR 97
>gi|33598960 alpha-2B-adrenergic receptor [Homo sapiens]
Length = 450
Score = 30.4 bits (67), Expect = 1.2
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 8 AKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARAT 67
AK +NR P++ G P + S + GA AS +L AL V+G +++T
Sbjct: 199 AKRSNRRGPRAKGGPGQGE-----SKQPRPDHGGALASAKLPALASVASAREVNGHSKST 253
Query: 68 GREMHGK 74
G + G+
Sbjct: 254 GEKEEGE 260
>gi|50658061 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1
[Homo sapiens]
Length = 1168
Score = 30.4 bits (67), Expect = 1.2
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 48 LSALEEAFRRFAVHGDARATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKS 107
+ L++AF AV A+A + G L K C+ I+G N + T +++ K
Sbjct: 364 MMTLKQAFTVAAVQQTAKAPAQLCEGCPLQSLHKLCERIEGMNSSKTKLEL------QKH 417
Query: 108 CRTITFEQFQEALEELAKKRFKDKSSE 134
T+T ++ EE+ K R +++ E
Sbjct: 418 LTTLTNQEQATIFEEVQKLRPRNEQRE 444
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 30.0 bits (66), Expect = 1.6
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 12 NRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREM 71
N TP +P PS + A S G G G+AA P+ S + E R+ R G
Sbjct: 34 NNTPNSTPAAPSSNHPAAGGCGGSGGPGGGSAAVPKHSTVVERLRQ-------RIEGCRR 86
Query: 72 HGKNWSKLCKDCQV 85
H N + QV
Sbjct: 87 HHVNCENRYQQAQV 100
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 2.1
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 4 KAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPE 47
KA P A R PP P +P R++ EGA G AA+PE
Sbjct: 616 KAPPGPA--RAPPGQPAEPDAPRSSPGPGAREEGA--GGAATPE 655
>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
Length = 542
Score = 29.3 bits (64), Expect = 2.7
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 6 KPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFR 56
+P + + +P S S+ R + L G G+G AA P L ALE A R
Sbjct: 457 RPRDSGSSSPRWSTDLQSRGRRLRVLGSWGPGLGDGVAAVPVLRALEVASR 507
>gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform a
[Homo sapiens]
Length = 1005
Score = 29.3 bits (64), Expect = 2.7
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 26/158 (16%)
Query: 14 TPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHG 73
TP P + K R LSL+++G+ S E + E +R V D R EM+G
Sbjct: 659 TPEPRPNEWEKRRITP-LSLQTQGS------SHETLNIVEEKKRAEVGKDERVITEEMNG 711
Query: 74 KNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCR------------------TITFEQ 115
K S ++ VT D + S+ S TI EQ
Sbjct: 712 KEISPGSGPGEIRKVEPVTQKDSTSLSSESSSSSSESEEEDVGEYRPHHRVTEGTIREEQ 771
Query: 116 -FQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPIIS 152
++E +EE + K EEAV E + + A +I+
Sbjct: 772 EYEEEVEEEPRPAAKVVEREEAVPEASPVTQAGASVIT 809
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 29.3 bits (64), Expect = 2.7
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 2 ADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAA 44
A A A A TPP PG P D A E AG GAAA
Sbjct: 46 AAAAAAAAAPGPTPPAPPG-PGTDAQAAGAERAEEAAGPGAAA 87
>gi|150170653 EF-hand calcium binding domain 4A [Homo sapiens]
Length = 294
Score = 29.3 bits (64), Expect = 2.7
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 18 SPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRF 58
SPG P D A E EG EG +A P + LE+A F
Sbjct: 3 SPGKPGADEAQ-----EEEGELEGGSAGPRAAILEQAEELF 38
>gi|4557841 recombination activating gene 1 [Homo sapiens]
Length = 1043
Score = 28.9 bits (63), Expect = 3.6
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 98 IVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSSEEAVREVHRLIEGKAPIISGVTKA 157
I FS+ K K R +FE+ E ++ K F+ K S E V +G+ P+
Sbjct: 23 IKFSEWKFKLFRVRSFEKTPEEAQKEKKDSFEGKPSLEQSPAVLDKADGQKPV------- 75
Query: 158 ISSPTVSRLTDTTKFTGSHKERFDPSGKGKGKA 190
PT L KF+ ++F + K +GKA
Sbjct: 76 ---PTQPLLKAHPKFS----KKFHDNEKARGKA 101
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 28.9 bits (63), Expect = 3.6
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 19 PGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGR 69
PGD D A + +S+GA E AA+S SA R+ V A GR
Sbjct: 32 PGDSGGDEAVASVPPDSQGAQEPAASSASASASAAVPRKAEVPCAAAEGGR 82
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 28.9 bits (63), Expect = 3.6
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 19 PGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGR 69
PGD D A + +S+GA E AA+S SA R+ V A GR
Sbjct: 32 PGDSGGDEAVASVPPDSQGAQEPAASSASASASAAVPRKAEVPCAAAEGGR 82
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 28.9 bits (63), Expect = 3.6
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 19 PGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGR 69
PGD D A + +S+GA E AA+S SA R+ V A GR
Sbjct: 32 PGDSGGDEAVASVPPDSQGAQEPAASSASASASAAVPRKAEVPCAAAEGGR 82
>gi|28144916 lin-37 homolog [Homo sapiens]
Length = 246
Score = 28.9 bits (63), Expect = 3.6
Identities = 17/73 (23%), Positives = 29/73 (39%)
Query: 14 TPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVHGDARATGREMHG 73
TPP PGD + R L E +G + + PE S +R R +E
Sbjct: 167 TPPGPPGDACRSRIPSPLQPEMQGTPDDEPSEPEPSPSTLIYRNMQRWKRIRQRWKEASH 226
Query: 74 KNWSKLCKDCQVI 86
+N + + +++
Sbjct: 227 RNQLRYSESMKIL 239
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 28.5 bits (62), Expect = 4.7
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 2 ADKAKPAKAANRTPPKSPGDPSKDRAAKRLSLESEGAGEGAAASPELSALEEAFRRFAVH 61
A PA A R+PP S G + A GE A ASPE SA E+ + +
Sbjct: 619 AGSGAPALAPPRSPPASAGSAEEPAAP----------GEAADASPEPSADEDDLMTCS-N 667
Query: 62 GDARATGREMHGKNWSKLCKDC 83
R T + + K C C
Sbjct: 668 ARCRRTETMFNACLYFKSCHSC 689
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 28.1 bits (61), Expect = 6.1
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 7 PAKAANRTPPKSPGDPSKDRAAKRLSLES-EGAGEGAAASPELSALEEAFRRFAVHGDAR 65
PA+A + +P P D AAKR++ S E GA + + V G +
Sbjct: 22 PAEAGSPSPASPPADGRLKAAAKRVTFPSDEDIVSGAVEPKDPWRHAQNVTVDEVIGAYK 81
Query: 66 ATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAK 125
++++ + KL + Q + +D+ K+ K+C EALEE+ K
Sbjct: 82 QACQKLNCRQIPKLLRQLQEFTDLGHRLDCLDLKGEKLDYKTC---------EALEEVFK 132
Query: 126 K-RFKDKSSEEAVREVHRLIEGKAP 149
+ +FK E+ + E + P
Sbjct: 133 RLQFKVVDLEQTNLDEDPRAEAEPP 157
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 28.1 bits (61), Expect = 6.1
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 7 PAKAANRTPPKSPGDPSKDRAAKRLSLES-EGAGEGAAASPELSALEEAFRRFAVHGDAR 65
PA+A + +P P D AAKR++ S E GA + + V G +
Sbjct: 22 PAEAGSPSPASPPADGRLKAAAKRVTFPSDEDIVSGAVEPKDPWRHAQNVTVDEVIGAYK 81
Query: 66 ATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAK 125
++++ + KL + Q + +D+ K+ K+C EALEE+ K
Sbjct: 82 QACQKLNCRQIPKLLRQLQEFTDLGHRLDCLDLKGEKLDYKTC---------EALEEVFK 132
Query: 126 K-RFKDKSSEEAVREVHRLIEGKAP 149
+ +FK E+ + E + P
Sbjct: 133 RLQFKVVDLEQTNLDEDPRAEAEPP 157
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 28.1 bits (61), Expect = 6.1
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 7 PAKAANRTPPKSPGDPSKDRAAKRLSLES-EGAGEGAAASPELSALEEAFRRFAVHGDAR 65
PA+A + +P P D AAKR++ S E GA + + V G +
Sbjct: 22 PAEAGSPSPASPPADGRLKAAAKRVTFPSDEDIVSGAVEPKDPWRHAQNVTVDEVIGAYK 81
Query: 66 ATGREMHGKNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAK 125
++++ + KL + Q + +D+ K+ K+C EALEE+ K
Sbjct: 82 QACQKLNCRQIPKLLRQLQEFTDLGHRLDCLDLKGEKLDYKTC---------EALEEVFK 132
Query: 126 K-RFKDKSSEEAVREVHRLIEGKAP 149
+ +FK E+ + E + P
Sbjct: 133 RLQFKVVDLEQTNLDEDPRAEAEPP 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,798,954
Number of Sequences: 37866
Number of extensions: 404546
Number of successful extensions: 1591
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1567
Number of HSP's gapped (non-prelim): 63
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.